dr. abby smith department of marine science university of otago dr. abby smith department of marine...
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Dr. Abby Smith
Department of Marine Science
University of Otago
Dr. Abby Smith
Department of Marine Science
University of Otago
Biomineralisation
Biomineralisation
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BiomineralisationBiomineralisation
Biomineralisation is the process by which living organisms produce mineral products, usually skeletal
What? Who? Where? When? How? How do we know? Why? At what cost? Who cares?
Biomineralisation is the process by which living organisms produce mineral products, usually skeletal
What? Who? Where? When? How? How do we know? Why? At what cost? Who cares?
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What?What?
Biominerals: almost 60 known Carbonates, phosphates, halides, sulfates Silicate, Fe oxides, Mn oxides, sulfides Metals, citrate, oxalates and more
About 50% of all precipitated minerals are based on Ca
Most common marine biominerals are calcium carbonate and silicate
Biominerals: almost 60 known Carbonates, phosphates, halides, sulfates Silicate, Fe oxides, Mn oxides, sulfides Metals, citrate, oxalates and more
About 50% of all precipitated minerals are based on Ca
Most common marine biominerals are calcium carbonate and silicate
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Calcium carbonate Silicate
CaCO3 SiO2
Calcium carbonate Silicate
CaCO3 SiO2 Crystalline or
amorphous Often contaminated with
other elements (Sr, Mg) Many polymorphs Commonly precipitated
by: Foraminifera Nannoplankton Invertebrates
Crystalline or amorphous
Often contaminated with other elements (Sr, Mg)
Many polymorphs Commonly precipitated
by: Foraminifera Nannoplankton Invertebrates
Amorphous opaline silicate
Generally nearly pure
Commonly precipitated by: Radiolarians, diatoms Some other plants Silicosponges and a few
other invertebrates
Amorphous opaline silicate
Generally nearly pure
Commonly precipitated by: Radiolarians, diatoms Some other plants Silicosponges and a few
other invertebrates
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Silicate is glassSilicate is glass
SiO2 is the mineral quartz, the most common mineral in Earth’s crust
Silicate is the main mineral in glass Biomineral silicate is usually transparent &
glassy, often in needle shapes SiO2 is used in cement, drilling muds, various ore
processing methods, also grinding, leaching, pumps, and as absorbents, lubricants, thickeners
SiO2 is the mineral quartz, the most common mineral in Earth’s crust
Silicate is the main mineral in glass Biomineral silicate is usually transparent &
glassy, often in needle shapes SiO2 is used in cement, drilling muds, various ore
processing methods, also grinding, leaching, pumps, and as absorbents, lubricants, thickeners
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Mineral SiO2Mineral SiO2
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Biomineral SiO2Biomineral SiO2
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CaCO3: an important biomineralCaCO3: an important biomineral Calcium carbonate (a.k.a. lime) Common on the Earth’s crust (4% by wt) Used in cements, mortars, lime, glass-
making, ornamental stone Fossils, mineral cements, limestones,
marbles, cave formations, mexican onyx, iceland spar, “tv rock”
Several different crystal structures
Calcium carbonate (a.k.a. lime) Common on the Earth’s crust (4% by wt) Used in cements, mortars, lime, glass-
making, ornamental stone Fossils, mineral cements, limestones,
marbles, cave formations, mexican onyx, iceland spar, “tv rock”
Several different crystal structures
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CaCO3 polymorphsCaCO3 polymorphs
Calcite Aragonite (trigonal) (orthorhombic)Calcite Aragonite (trigonal) (orthorhombic)
CO O
O
Ca
Ca
Ca
Ca
Ca
Ca
CO O
O
Ca
CaCa
Ca Ca
Ca
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Calcite Aragonite Calcite Aragonite
Easy, cheap to make
Resistant to dissolution
Stable over time
Mg substitution (< 22%)
Common in cool waters
Expensive to make
Resistant to mechanical stress
Metastable
Sr substitution (< 2%)
Common in warm waters
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Mineral CalciteMineral Calcite
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Biomineral CalciteBiomineral Calcite
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Mineral AragoniteMineral Aragonite
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Biomineral AragoniteBiomineral Aragonite
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22
8
4
0
HMC
IMC
LMC
Wt %MgCO3
incalcite
Bio-Mineralogical SpaceBio-Mineralogical Space
0 50 100Wt % Calcite
100 50 0Wt % Aragonite
Aragonite Calcite
(Smith et al, 2006)
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Who?Who? Bacteria, fungi, protists Algae, phytoplankton, plants Invertebrates
Sponges, worms, bryozoans, brachiopods, Molluscs, arthropods, echinoderms…
Vertebrates Ascidians, chordates
In all, 55 phyla have at least some mineralisers (thus some hard parts)
Bacteria, fungi, protists Algae, phytoplankton, plants Invertebrates
Sponges, worms, bryozoans, brachiopods, Molluscs, arthropods, echinoderms…
Vertebrates Ascidians, chordates
In all, 55 phyla have at least some mineralisers (thus some hard parts)
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Microfossils
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CoccolithophoresCoccolithophores Haptophyta:
Prymnesiophyceae: Coccolithales
Marine calcareous nannoplankton
Coccolithus huxleyi Coccoliths (~ 1 µm) form
sediment, chalk Low-Mg calcite
Haptophyta: Prymnesiophyceae: Coccolithales
Marine calcareous nannoplankton
Coccolithus huxleyi Coccoliths (~ 1 µm) form
sediment, chalk Low-Mg calcite
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ForaminiferaForaminifera Amoeboid protozoa Pelagic marine Consumers Globigerina, Orbulina Tests (1 mm) form sediment Important in deep sea cores
& paleoceanography Almost all calcite
Amoeboid protozoa Pelagic marine Consumers Globigerina, Orbulina Tests (1 mm) form sediment Important in deep sea cores
& paleoceanography Almost all calcite
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Plants
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Codiacean Green Algae
Codiacean Green Algae
Chlorophyta: Bryopsidales
Tropical marine Halimeda, Penicillus Rapid sediment
production, lime mud Usually aragonite
Chlorophyta: Bryopsidales
Tropical marine Halimeda, Penicillus Rapid sediment
production, lime mud Usually aragonite
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Coralline AlgaeCoralline Algae
Rhodophyta: Corallinales Tropical to temperate marine
shallow water Geniculate or non-geniculate Corallina, Lithothamnion Rhodoliths Fossils, Limestone High-Mg calcite
Rhodophyta: Corallinales Tropical to temperate marine
shallow water Geniculate or non-geniculate Corallina, Lithothamnion Rhodoliths Fossils, Limestone High-Mg calcite
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Invertebrates
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Corals -- solitary and colonialCorals -- solitary and colonial
Coelenterata: Anthozoa Soft vs hard corals Reef-building (tropical) vs
solitary Porites, Flabellum Reefs, biodiversity, sea-
level research Aragonite
Coelenterata: Anthozoa Soft vs hard corals Reef-building (tropical) vs
solitary Porites, Flabellum Reefs, biodiversity, sea-
level research Aragonite
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Brachiopods -- lamp shellsBrachiopods -- lamp shells
Brachiopoda Benthic marine Calloria, Notosaria,
Terebratella Long fossil record Usually calcite or
fluorapatite (Ca phosphate)
Brachiopoda Benthic marine Calloria, Notosaria,
Terebratella Long fossil record Usually calcite or
fluorapatite (Ca phosphate)
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Bryozoans -- moss animalsBryozoans -- moss animals
Bryozoa Marine benthic colonies Bugula, Cellepora Thickets, encrusting Important sediment-
formers, long fossil record
Variable mineralogy
Bryozoa Marine benthic colonies Bugula, Cellepora Thickets, encrusting Important sediment-
formers, long fossil record
Variable mineralogy
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Molluscs - clams, snails, squidsMolluscs - clams, snails, squids
Pelecypods: clams, scallops, oysters
Gastropods: snails, limpets, paua
Cephalopods: squid, octopus Chitons, tusk shells,
pteropods Highly variable mineralogy
Pelecypods: clams, scallops, oysters
Gastropods: snails, limpets, paua
Cephalopods: squid, octopus Chitons, tusk shells,
pteropods Highly variable mineralogy
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Annelids -- wormsAnnelids -- worms
Annelida: Serpulidae Marine benthos Tubes, reefs Galeolaria, Serpula High-Mg Calcite
Annelida: Serpulidae Marine benthos Tubes, reefs Galeolaria, Serpula High-Mg Calcite
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Arthropods: crabs, barnaclesArthropods: crabs, barnacles
Arthropoda: Crustacea (crabs) Cirripedia (barnacles) Ostracoda
Cancer, Balanus Mobile, consumers Usually calcite
Arthropoda: Crustacea (crabs) Cirripedia (barnacles) Ostracoda
Cancer, Balanus Mobile, consumers Usually calcite
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Echinoderms -- urchins, starsEchinoderms -- urchins, stars
Echinodermata: Echinoidea (urchins), Asteroidea (stars)
Evechinus Mobile, consumers High-Mg calcite
Echinodermata: Echinoidea (urchins), Asteroidea (stars)
Evechinus Mobile, consumers High-Mg calcite
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Vertebrates
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Vertebrates -- bone, eggsVertebrates -- bone, eggs
Most bones are calcium phosphate (Dahllite or Francolite): Ca5(PO4, CO3)3OH
Otoliths & Eggshells: CaCO3
Most bones are calcium phosphate (Dahllite or Francolite): Ca5(PO4, CO3)3OH
Otoliths & Eggshells: CaCO3
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Bio-Mineralogical SpaceBio-Mineralogical Space
22
8
4
0
HMC
IMC
LMC
Wt %MgCO3
incalcite
0 50 100Wt % Calcite
100 50 0Wt % Aragonite
Aragonite Calcite
(Smith et al, 2006)
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Where?Where?
Shallow tropical environments are dominated by aragonite and high-Mg calcite
In shallow temperate/polar environments, low-Mg calcite dominates
Moderate deep waters -- calcite oozes Deep high-productivity ocean -- silicate
Shallow tropical environments are dominated by aragonite and high-Mg calcite
In shallow temperate/polar environments, low-Mg calcite dominates
Moderate deep waters -- calcite oozes Deep high-productivity ocean -- silicate
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When?When?
5 billion years ago -- Earth 2.7 Bya -- First biological precipitation in
sulfides 1.6 Bya -- Encrusting bacteria produce
Mn crusts 1 Bya -- metazoans (unmineralised
fossils such as tracks, burrows) 1 Bya -- lightly calcified cyanobacteria
5 billion years ago -- Earth 2.7 Bya -- First biological precipitation in
sulfides 1.6 Bya -- Encrusting bacteria produce
Mn crusts 1 Bya -- metazoans (unmineralised
fossils such as tracks, burrows) 1 Bya -- lightly calcified cyanobacteria
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Proterozoic - Phanerozoic Proterozoic - Phanerozoic
Phanerozoic means “visible life.” 570 Mya -- beginning of Cambrian Period A major extinction Onset of truly shelled organisms
Plants, animals, bacteria Carbonates, phosphates, silicates
Phanerozoic means “visible life.” 570 Mya -- beginning of Cambrian Period A major extinction Onset of truly shelled organisms
Plants, animals, bacteria Carbonates, phosphates, silicates
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Cambrian PeriodCambrian Period
570 to 490 Mya “Problematica” experimenting with
minerals and structures, most died out by end of Cambrian
570 to 490 Mya “Problematica” experimenting with
minerals and structures, most died out by end of Cambrian
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Ordovician PeriodOrdovician Period
490 to 434 Mya Phosphatic minerals became limited to
vertebrates Silicates precipitated by sponges,
radiolarians By 434 Mya, all major mineralising taxa had arisen and were well-established.
490 to 434 Mya Phosphatic minerals became limited to
vertebrates Silicates precipitated by sponges,
radiolarians By 434 Mya, all major mineralising taxa had arisen and were well-established.
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Vertebrates and boneVertebrates and bone
Devonian 395 Mya -- bony fish arise
Carboniferous 285 Mya -- reptiles
Triassic 200 Mya -- mammals on land
Mid-Jurassic 170 Mya -- birds evolve last of the vertebrates
Devonian 395 Mya -- bony fish arise
Carboniferous 285 Mya -- reptiles
Triassic 200 Mya -- mammals on land
Mid-Jurassic 170 Mya -- birds evolve last of the vertebrates
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Mesozoic marine productionMesozoic marine production
Triassic reef-building time 230 Mya Carbonate producers (forams,
coccoliths) invaded the open ocean at about 195 Mya
Silicate producers (radiolarians, diatoms) became important in the open ocean in the Cretaceous
(100 - 65 Mya) Mollusc reef-building
Triassic reef-building time 230 Mya Carbonate producers (forams,
coccoliths) invaded the open ocean at about 195 Mya
Silicate producers (radiolarians, diatoms) became important in the open ocean in the Cretaceous
(100 - 65 Mya) Mollusc reef-building
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The situation nowThe situation now
Open ocean undersaturated with silica, much lower in calcite than before the Jurassic.
Carbonate and silicate “stored” in solid form in sea floor sediments Huge and diverse aragonitic reefs in the tropics Large tracts of cool-water shelf gravels, But remember -- it hasn’t always been this way.
Open ocean undersaturated with silica, much lower in calcite than before the Jurassic.
Carbonate and silicate “stored” in solid form in sea floor sediments Huge and diverse aragonitic reefs in the tropics Large tracts of cool-water shelf gravels, But remember -- it hasn’t always been this way.
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How?How?
Silicification and Calcification are complicated and poorly understood
People want to know, though, because of the many medical uses to which such information could be put
Silicification and Calcification are complicated and poorly understood
People want to know, though, because of the many medical uses to which such information could be put
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CalcificationCalcification
CO2 (gas) + H2O --> CO3= + 2H+
CO3= + 2H+ + Ca ++ --> CaCO3 + 2 H+
Does not require an organism -- if water is warm and supersaturated
CO2 (gas) + H2O --> CO3= + 2H+
CO3= + 2H+ + Ca ++ --> CaCO3 + 2 H+
Does not require an organism -- if water is warm and supersaturated
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Sites of MineralisationSites of Mineralisation
Surficial, Extracellular, Cell wall, cellular Surficial, Extracellular, Cell wall, cellular
Extracellular
CellularCell wall
Surficial
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How do we know?How do we know?
Staining, titration X-ray diffractometry Raman laser spectrometry
Staining, titration X-ray diffractometry Raman laser spectrometry
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Biomineralisation costsBiomineralisation costs
It takes up energy It makes you heavier, maybe slower It gets in the way of physiological
functions
It takes up energy It makes you heavier, maybe slower It gets in the way of physiological
functions
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Why Biomineralise?Why Biomineralise?
Protection Structural support, doors Food gathering Reproductive protection Navigation, Gravity reception Detoxification, mineral storage
Protection Structural support, doors Food gathering Reproductive protection Navigation, Gravity reception Detoxification, mineral storage
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So what?So what?
Biomineralisation produces shells
Shells break down into sediment
Sediments lithify into fossils, limestones, marble
A permanent record
Biomineralisation produces shells
Shells break down into sediment
Sediments lithify into fossils, limestones, marble
A permanent record
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A permanent record of what?A permanent record of what?
Chemistry of sea water Marine sedimentation Storage of solid carbonate in
the carbon cycle Biodiverse environments such
as reefs Fossilisation, preservation Record of evolution over time
Chemistry of sea water Marine sedimentation Storage of solid carbonate in
the carbon cycle Biodiverse environments such
as reefs Fossilisation, preservation Record of evolution over time
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Mineralogy and sea-water chemistryMineralogy and sea-water chemistry
Aragonite is less stable than calcite High-Mg calcite is even less stable
High-Mg calcite producers may be at greatest risk from acidification, especially in cool waters
(Andersson et al., 2008)
Aragonite is less stable than calcite High-Mg calcite is even less stable
High-Mg calcite producers may be at greatest risk from acidification, especially in cool waters
(Andersson et al., 2008)
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Bio-Mineralogical RiskBio-Mineralogical Risk
22
8
4
0
HMC
IMC
LMC
Wt %MgCO3
incalcite
0 50 100Wt % Calcite
100 50 0Wt % Aragonite
Aragonite Calcite
(Smith et al, 2006)
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So who cares?So who cares?
Calcifying organisms Life could get a lot harder for shell-formers
Marine food chains & reef dwellers If calcifying organisms are struggling, so
will others who rely on them
Us Implications for fisheries, conservation,
carbon cycle, marine geological history
Calcifying organisms Life could get a lot harder for shell-formers
Marine food chains & reef dwellers If calcifying organisms are struggling, so
will others who rely on them
Us Implications for fisheries, conservation,
carbon cycle, marine geological history
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In Summary, In Summary,
Many different kinds of marine organisms make shells from many different biominerals
CaCO3 (calcite and aragonite) is the most common biomineral, and the most likely to be affected by ocean acidification
Understanding the mineralogy of marine shells allows evaluation of risk
Many different kinds of marine organisms make shells from many different biominerals
CaCO3 (calcite and aragonite) is the most common biomineral, and the most likely to be affected by ocean acidification
Understanding the mineralogy of marine shells allows evaluation of risk