e t u t i ts n update on the status of the ml foodchain ... · predictive microbial modelling lab...
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Update on the status of theFoodChain-Lab project
Dr. Lea Herges
Policy Matters, Clearing, internationalAffairs, EFSA Focal Point
Federal Institute for Risk Assessment (BfR)
Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
FoodRisk-Labs (https://foodrisklabs.bfr.bund.de)
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FoodRisk-Labs is a portal for different tools developed by the BfR such as
FoodChain-Lab
Predictive Microbial Modelling Lab (PMM-Lab)
FoodProcess-Lab
Repository for predictive microbial models
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Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
What is FoodChain-Lab?
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Database helping to collect, handle and analyse the huge amounts of food deliverydata needed in outbreak investigations
Free and open source software
Database for managing food tracing data
Tool for visualization and interactivereasoning
Tool for data cleaning, enrichment& processing
Validation
Cleaning (e.g. Duplicate Detection)
Enrichment (e.g. Geocoding)
Analysis (Clustering, Tracing, Scoring, etc.)
Possibility of testing/generating hypotheses
Learning resources such as tutorials and
documentation is available on the website
→ https://foodrisklabs.bfr.bund.de
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Weiser et al., 2013: “Trace-Back and Trace-Forward Tools Developed Ad Hoc and Used During the STEC O104:H4Outbreak 2011 in Germany and Generic Concepts for Future Outbreak Situations“, Foodborne Pathog Dis.
FoodChain-Lab – Past
Sprout producer
Seed producer
Cases
Retailer in France
After the outbreak = Before the outbreak
Weiser et al., 2016: “FoodChain-Lab: a trace-back and trace-forward tool developed and applied duringfood-borne disease outbreak investigations in Germany and Europe“, PLoS ONE.
Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
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EHEC 2011
Other cases:
DE:Norovirus 2012
EU:HAV 2013/14
UK:EHEC 2016
Real world application - Past
Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
https://www.efsa.europa.eu/en/press/news/140411
Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
FoodChain-Lab – Past events and initiatives
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19 – 20 March 2015, Berlin Germany
FoodChain-Lab - An innovative tool for food safety through product chain analyzes
12 – 13 May 2015, Bern, Switzerland
Introduction to the FoodChain-Lab software - an innovative tool for food safetythrough product chain analysis
12 – 13 November 2015, Berlin Germany
International FoodChain-Lab Workshop 2015
8 – 9 February 2016, Berlin Germany
HoA workshop: Tools supporting food chain safety assessments
18 – 19 February 2016, Berlin Germany
BfR Symposium - Risks along the global food chain
15 – 17 March 2016, Riga, Latvia
Baltic Countries 2016 Workshop on Crisis preparedness
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Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
Framework Partnership AgreementEFSA and BfR to work jointly on global food safety tools
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Title: Risk Assessment Tools for the Safety of Global Food and Feed SupplyChains (Number: GP/EFSA/AMU/2016/01)
ED visit to Germany on 30th October 2014
Framework Partnership Agreement,
singed on 8th December 2016
Description: Trace-back and predictive modelling tools for use during food safetyoutbreaks and created by scientific teams led by the German Federal Institute for RiskAssessment (BfR) will be further rolled out under a new funding partnership agreedbetween EFSA and BfR. The two agencies will be able to further benefit from eachother’s research efforts and avoid duplication of future work programmes.
Life span: 4 years
Press releases: https://www.efsa.europa.eu/en/press/news/161208
http://www.bfr.bund.de/cm/349/efsa-and-bfr-to-work-jointly-on-global-food-safety-tools.pdf
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Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
Risk Assessment Tools for the Safety of Global Food and FeedSupply Chains
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Working areas
0. Overall reporting and communication
1. Map and analyse global food and feed supply chains (FoodChain-Lab)
2. Establishment of a European food and feed safety model repository
3. Implementing uncertainty analysis in food and feed safety assessment
4. Strengthen regional networks for crisis preparedness and communication in timesof crisis
Scientific Governing Board
BfR
• Annemarie Kaesbohrer (Biological Safety), Matthias GREINER (Exposure),Torsten HEROLD (Crisis prevention and coordination)
EFSA
• Didier VERLOO (AMU), Tobin ROBINSON (SCER), Stephan BRONZWEAR(AFSCO)
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Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
Map and analyse global food and feed supply chainsSpecific Agreement 1 – SA1
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Main goal
continuous development of FoodChain-Lab in cooperation with intended users inEFSA, MS and at EC
Tasks
Possible use of FoodChain-Lab in future outbreaks - FoodChain-Lab support
General and specific coachings of MS by conducting case studies
Establishment of an EFSA tracing network to introduce the methodologies andevaluate case studies
Continuously development of new features and analytics in cooperation with theEFSA DEMOS project
Governing Board
BfR:
• Annemarie Kaesbohrer, Armin Weiser
EFSA
• Didier Verloo, Olaf Mosbach-Schulz
Kick-Off: April 20179
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FoodChain-Lab - Future
Further Workshops
→ 7 June 2017 in Parma: World Café, adressing questions on
Tracing networks, regional networks
Model repository users
→ 14 - 16 June 2017 in London, UK specific
General workshops
“Bilateral” workshops by request
Implementation as Web-Tool (browser-ready)
Simplify data input: allow to import data
from other systems (e.g. iRASFF)
DEMOS – defining standard data format for tracing
“Rapid Deployment Team” – Support on request
Lea Herges, 17th-18th May 2017, 31th EFSA Focal Point meeting, Helsinki
Dr. Armin Weiser Christian Thöns
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Thank you for your attention
Dr. Lea Herges
German Federal Institute for Risk Assessment
Max-Dohrn-Str. 8-10 10589 Berlin, GERMANY
Phone +49 30 - 184 12 - 4004 Fax +49 30 - 184 12 - 47 41
[email protected] www.bfr.bund.de/en