eapm report big data workshop european health forum[1]
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This is the report about a BIG DATA workshop at the European Health Forum Gastein 2013TRANSCRIPT
COLOPHON
Production VitalTransformationBVBA www.vitaltransformation.com
Words Nuala Moran
Design Peter Koekoek
Photos European Health Forum Gastein BigStockPhoto
The Big Data Workshop was organised by the European Alliance for Personalised Medicine and supported by the Lithuanian Health Forum, EFPIA, IBM and Pfizer in Gastein, Austria from 2 – 4 October 2013.
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B I G D A T A W O R K S H O P 3
Harnessing big data to improve R&D and the translation of new therapies
With health care under pressure from many angles, the key issue is to ensure sustainability of health systems in the face of these challenges. Rational application of big data has an important role to play.
Itcanbedifficulttotalkaboutthepromiseofinvestinginbigdataattimesoffallingresourcesforhealthcare,saidLeonas Kaletinas, Member of the Board of Directors
of the Lithuanian Health Forum.However,“Thereclearlyisopportunityforcountrieslikeours,andforpatients,professionalsandpayerstousethebasicsofbigdatatobecomecost-effective,toavoidwaste,toincreasevalueandincreaseefficiency,”KaletinassaidopeningthedebateintheBig Data Workshop,heldaspartofthe16th European Health Forum in Gastein,Austriafrom2–4October.
“Foroursystembigdatacouldbearevolution,becausewecouldseehugechangesinhealthcaremanagement,”Kaletinassaid,inthefirstsession,‘Big Data and Best Practice for Public Health’.
AnimportantaspectforLithuaniainitscurrentEUPresidencyroleistostressthepotentialbenefitsofbigdatainhelpingtostrengthenhealthsystems.‘Sustainable Health Systems for Inclusive Growth in Europe’isthetopicfortheLithuanianPresidencyConferenceinVilniuson19–20November.KaletinassaidshehopestheconferenceinVilniuswillprogressthingssothatnextyear,“bestpracticeandnotbarriers”arethefocusofattempttomovethedeploymentofbigdataforward.
TwoparticularareaswheretheEuropeanCommissioncouldhelpopendoorstobigdata,areinnewdataprotectionlegislationandthroughfundingprogrammestopromoteadoption,Kaletinasbelieves.ForcountrieswithlimitedfundingandashortageoftheappropriateskillsbeingpartofaEuropeannetworkwouldbeveryhelpful.
LeonasKaletinas,MemberoftheBoardofDirectorsoftheLithuanianHealthForum
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Itisnecessarytotakeameasuredapproachtobigdata–bearinginmindthatqualitycountsmorethan
quantity,Terje Peetso, Unit H1 – Health and Well Being, DG Connect at the European Commission suggested.Theremaynowbedifferencesinscale,butmedicalsciencehasalwaysbeenaboutcollectingdatasaidPeetso.“It’snotabouttakingbloodit’saboutanalysingit,”shesaid.
Similarly,bigdatashouldnotbeseenassomesortofendinitself,butshouldbeappliedinwaysthatcontributetopublichealthandpatientempowerment.Agoodplacetostartwouldbeexistingdatarepositories.“It’slikerefiningcrudeoiltoaddvalue;weshouldlookintodatawealreadyhaveandgetvaluefromthat,”Peetsosaid.
Thiswouldprovidethefoundationforlookinginto“new”datathatis
accumulating.Inhealth,itisimportantnottofocussolelyondataperse,butalsoonquestionsaboutownership,trustandaccess,andoninteroperabilitybetweendifferentcomputersystemstoensureallrelevantdatacanbeassembledandanalysed.
Indeed,interoperabilityisseenasaparticularissueinapplyingbigdatatopublichealth,withmanydisparatesystems,bothwithindifferenttiersofnationalhealthservicesandbetweenmemberstates.
Thequestionofinteroperabilityofmedicaldatasystemskeepscroppingup,andtherehavebeenmanyattemptstodealwiththis.Whileitis“amonumentaltask”therearesomecompellingexamplesofthevalueofpersisting,saidJohn Crawford, Healthcare Industry Leader Europe, IBM. The European Union’sepSOS(EuropeanPatientsSmart
OpenServices)system,whichnotonlytransmitsmedicaldatafromonecountrytocountry,butalsotranslatesfromonelanguagetoanother,“isagreatexample,”Crawfordsaid.
AnotherisScotland’sEmergencyCareSummarydatabasecontainingasummaryofdemographic,allergyandmedicationinformationfor5.5millionpeople.Itenableshealthcareprofessionalstoaccesstoimportantpatientinformationinemergencyandunscheduledcaresituations.
Quality not quantity
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TerjePeetso,UnitH1–HealthandWellBeing,DGConnectattheEuropeanCommission
Amelia Andersdotter, MEP (Greens/EFA, Sweden)hasadeep
personalunderstandingoftheissuesofownership,trustandsecurityintheageofbigdatabecausesomeofherownchildhoodmedicalinformationhasbeenpublishedinSwedenwithoutherconsent.TheinformationisavailableviatheInternet,whichAndersdotterpointedout,“isnotaplacethatissecure.”
ForAndersdotter,therearetwoparticularissueshere:thatinformationtechnologiesarebeyondthecompetencesofmostmedicalpractitionersandthattheInternetisoutsidethelaw.AsAndersdotterpointedout,“The[US]NationalSecurityAgencycan’tinvademyhousebuttheycaninvademyInternet.”
HavingnocontroloverthepublishedmedicalinformationismakingAndersdotter“uncomfortable”andleadinghertoavoidcontactwithhealthinstitutions,asituationwhichisexactlytheoppositeofhowanyonewouldliketoseetheapplicationofbigdataplayingout.
AsAndersdotternoted,inallothercircumstancesthereishighconfidencethatmedicalrecordsaresecure,withnoaccessforthecourts,thepoliceorthepress.Evenifanindividualgivesinformedconsentfortheirdatatobeused,theproblemofsecurityofdataremains.“TheInternetisfordistributinginformation,soifthere’sinformationyoudon’twantdistributing,it’snottherighttool-likeahammer,theInternetsolvessomeproblemsbutnotothers,”Andersdottersaid.
Afurtherquestionrevolvesaroundthenatureofconsent.Whenanindividualagreestheirhealthinformationcanbemadeavailableinsomeway,theydonotknowwhattheyareconsentingto.“Thedoctorinputsthedata,sothepatientdoesn’tknowifthere’sarisk,”saidAndersdotter,adding,“therearesomeseriouschallengesforpoliticiansandindustrytopreservetheconfidenceofcitizens.”
TheEuropeanCommissionneedstoaddresspointsoffailureinthesystembeforebigdatamovesahead,Andersdottersaid,suggestingamoregranularapproachtouseofdatamaybeappropriateandthattheimmediatefocusshouldbeonopeningupdatathatisnotpersonalbutisneverthelessrelevanttopublichealth,suchasclinicaltrialsdataandinformationinsubscriptionmedicaljournals.
JohnCrawfordagreedthedesignprinciplesoftheInternet,whicharebasedonsharinginformation,makeitinherentlyunsuitableforsensitiveprivatedata.Buthenoted,privatedatastoresintheCloud,withappropriateencryptionandothersecuritymeasures,couldprovideasolution.
Theappropriatesecuritymeasuresdependonhowtheinformationisused,Andersdotterbelieves.Pseudonymisationmayworkwithmachinereadingofdata,butwouldnotnecessarilypreserveconfidentialityiftheinformationisbeingreadbyahuman.“Youneedtothinkaboutissueslikethisinimplementinganytechnicalsystems,”Andersdottersaid.
The Internet is a hammer
AmeliaAndersdotter,MEP(Greens/EFA,Sweden)
Thechallengeofbigdataandhealthinformaticsliesnot
onlyincapturingandstoringinformationsecurely,butalsoindevisingthetoolsandanalyseandmanageit,saidBarbara Kerstiens, Head of Sector, Public Health, DG Research at the European Commission,openingthesecondsessionoftheworkshop on ‘Data Sharing for Improved Research and Translation’.
TheCommissionisfundingresearchonboththeseaspects.Anumberofissuesneedtobeaddressedinharnessingthepowerofbigdatatoimproveresearchandspeeduptranslationofresearchoutputstoimprovehealthbothatapublichealthlevelandinthedevelopmentofpersonalisedmedicines.
Theseinclude:standardisation,integration–especiallytoachieveeconomiesofscale,forexampleinresearchintorarediseases;thechallengeofopenaccess,andnotjustmakingdataavailablebutensuringitisreadableanduseable;theneedfornewstatisticalmethodsandtools;andprovidingthemeanstotrackclinicaloutcomes.
Dealingwiththis‘todo’listcallsforinternationalcollaboration.“No
individualcountrycandealwiththesechallengesorgetthebenefits[alone],Kerstienssaid.TheEuropeanCommissioniswellplacedtosupportthenecessaryresearch,buildingonpreviousinvestmentssuchastheEuropeanBioinformaticsInstituteandasignificantnumberofinternationalcollaborationsithasfundedinthisfield.
ThereisalsoaneedforanEU-levelpublicprivatepartnershipinvolvingallstakeholderstoconsiderallaspectsofdatasharingandaccess,toensurethereisaparticipant-centredapproach.
Fromaresearchperspective,itiscriticaltoavoidperpetuatingdatasilosthataredisconnectedfromoneanother,sincethiswilllimitthepotentialforbigdataanalyses.“It’saworkinprogress
andcontinuingtalksareneeded,”Kerstienssaid.“Providersofdataneedtounderstandthechallenges.”
TheInnovativeMedicinesInitiativeisanexampleofanEU-fundedprogrammethataimstoimprovedrugdevelopmentandregulationthroughtheuseofpooleddata.Meanwhile,newEUClinicalTrialsandDataProtectionrulesthatarebeingformulatedcurrentlymeantheissuesrelatingtobigdata,healthresearchandprivacy,areonthetable.“Itisaconversationthathasstartedandistobecontinued,”saidKerstiens.
The issues are on the table
BonnieWolff-Boenisch,HeadofResearchAffairsatScienceEuropeandJohnCrawford,HealthcareIndustryLeaderEurope,IBM
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Bonnie Wolff-Boenisch, Head of Research Affairs at Science Europe,thebodyestablishedin2012torepresenttheviewsoftheleadingresearchfunding
organisationsaroundEurope,toldtheworkshopthatallresearchuniversitiesaretryingtostrikeabalancethatensuresthepotentialofbigdataisrealised,butthatprivacyisnotcompromised.
Openingupdataisimportant:“Ifyouhavebrightmindsaccessingit,youdon’tknowwhatwillcomeoutofit,”Wolff-Boenischsaid.ScienceEuropeconsiderssomerulesaretoostrictandcouldhampercertaintypesofresearch.Forexample,arequirementtogetinformedconsentforeachindividualpieceofresearchwouldmakebiobanksinefficient.
Similarly,itisimportantnottobetooprescriptive,sincethekeytoextractingvaluefromdataistobeabletoapplynewtools,to“playaround”andcomeupwithnewmethodsandapproachesforconvertingdatatousefulinformation.“Weneedtobeabletoreadthebookofbigdata,”saidWolff-Boenisch.
Thepowerinherentinbigdataisthatitcanprovide“individualisedevidence”leadingtothedevelopmentoftruelypersonalisedmedicine,saidAngela Brand, Professor of Health, Medicines and Life Sciences at Maastricht University and Co-chair of the workshop on behalf of the European Alliance for Personalised Medicine.
Bigdatawillprovidethemeansfordecisionsupportacrossallaspectsofhealthcare–rangingfromassessingsafety
andefficacyofdrugs,tocarryingouthealthtechnologyassessments,andprevention,diagnosisandtreatment-toberefocusedfromthepopulationlevel,onesizefitsallparadigm,totheindividual.“Weneedtogetindividualevidence,”Brandsaid,“andthisinformationmustbeavailableonajust-in-basis.”
Achievingthisambitionraisespresentschallengesaroundthegovernanceandthequalityofimplementationofbigdatainhealth,andcallsforstandardsforconsolidating,characterising,validatingandprocessingdata.However,Brandsaid,itsinherentdiversityandcomplexitymeanshealthinformation“willalwaysbemessy”,raisingthequestionofhowtosetthebarinassessingqualityofimplementation.
Whiledatausersshouldbeaccountableforthecustodianshipofpersonalmedicalinformation,itisimpossibletoguaranteecompletedatasecurity,anditwouldbedishonesttodoso.Giventhis,Brandsuggestedamoreappropriateapproach–toreplacetherequirementforindividualinformedconsenteverytimesomeone’sdataisused–wouldbethatindividualdatasetsareaggregatedintobigdataalgorithms.
Inthediscussion,delegatesraisedanumberofotherissues,includinghowtoguaranteethequalityofdatagoingintoshareddatabases,agreeingtechnicalapproachestowhichallstakeholderscansignup,anddevelopingsustainablebusinessmodelsforthedeploymentofbigdatainhealth.
Reading the book of big data
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It’sclearthatestablishingtrustisessentialifthetechniquesandtoolsofbigdataaretobesuccessfully
appliedtohealth.Thekeytothisistransparencysothat,“peoplewhogivedataknowwhathappenstoitandfollowit,”saidErnst Hafen of the Institute of Molecular Systems Biology, ETH Zurich,openingthethirdsessionon‘Big Data and improved evaluation models for efficacy and efficiency’.
Hafensuggested‘ThePeople’sHealthDatabank’asamodelforengenderingtrustandtransparency.Thiswouldbeasafeandsecureplacetostoredata,whichpeopletrustinthesamewayastheytrustabanktostoretheirmoney,andtotransmitittothirdpartiesontheinstructionsoftheaccountholder.
Suchhealthandgenomicdatabankscouldberunascooperatives,withrequestsfordataaccessforresearchpurposeshandledcentrally,andindividualshavingtherighttowithholddatafromparticularpiecesofresearch.Forcompaniesrequestinginformationforadrugdevelopmentproject,therewouldbeacharge,withthemoneyinvestedbackintotherunningofthedatabank.
ThehugepotentialthatbigdataholdstodrivethedevelopmentofpersonalisedmedicinemakesitappearcountertotheprincipleofsolidaritythatunderpinsEurope’shealthcaresystems.OrganisingthePeople’sHealthDatabankasacooperativewouldenshrinesolidarityinthenewageofpersonalisedmedicine.Individualswouldsharetheirdatatogetcuresforthemselvesandforeveryoneelse.
Hafenproposedtherewouldbeacooperativehealthdatabankineverycountry,eachusingthesamedatastandardssoinformationcouldbesharedbetweenthem.
TheideaofcollectivelycreatingconsentinthePeople’sHealthDatabankisverycompelling,believesAdam Heathfield, Director of Science Policy Europe at Pfizer.Thecooperativemodelisagoodoneifpeoplebuyin.
Asacompany,Pfizerismakingaconcertedefforttomakebetteruseofreallifedataandhasputanewteaminplacetolookatthis.InR&Dthefirststepwillbetobuildonepidemiologicalinformationtobecomesmarterintargetselection,andthenoverlaygenomicstolinkgenotypesandphenotypes.Forexistingproducts,bigdatawillbeusedtoanswerquestionsabouthowwellmedicinesactuallyperforminthemarketandtoprovideinputsforhealthtechnologyassessments.
Post-marketingstudiesandhealthtechnologyassessmentsarebecomingamuchbiggerburden,requiringinformationthatcannotbegeneratedinclinicaldevelopment,andbigdatapromisestoprovidesomerelief.Issuesremainingtoberesolvedincludeguaranteeingdataqualityanddevelopingrobustmethodsforframingandansweringquestions.“Wearealongwayfromhavingthedataanalysistoolsweneed,”Heathfieldsaid.
While,assuggestedinHafen’sPeople’sHealthDatabankmodel,Pfizerispreparedtopayforaccesstoanonymiseddatasets,Heathfieldnoted
thatpharmaceuticalcompaniescannotpaypeopletotakepartinclinicaltrials(thoughtheycanpayexpenses).“Therewouldbeaproblemofacooperativegenuinelygettingconsentandbeingpaidfordata,withoutskewingthatissue,”saidHeathfield.
Hafensuggestedthiscouldbefinessedbyagatekeepingfunction.Forexample,inadatabasewith10millionrecords,theremightbe30,000womenwithaBRCAgenemutationwhohaveagreedtoshareinformationontheirstatus.IfPfizerpaidforaccess,thecooperativewouldfilterthedatabaseandthenapproachthewomenandaskiftheywantedtoparticipateinaclinicaltrial.
Thetechnologyisathandtoapplybigdatatohealth,buttheremustbeapublicdebateabouttherisksassociatedwithdatasharing,saidJohnCrawford.Furthermore,thereisnopointinaccumulatingdataunlessitisthenanalysedandtheresultstranslatedintoaction.
Healthcertainlyfitsthebigdataparadigmintermsofthevolumeofdataitgenerates.However,itremainsthe
We are all health billionaires
AngelaBrand,ProfessorofHealth,MedicinesandLifeSciencesatMaastrichtUniversity
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casethatthemajorityofthisisheldintextfiles.“Youhavetogetitintoastatewhereyoucandosomethingusefulwithit,”Crawfordsaid.
Informationheldinhealthrecordsmaynothavetheotheressentialbigdatapropertyofvelocity,butotherformsofhealthdatado.Inonefamousexample,GoogleclaimedtohavetrackedtheoutbreakofseasonalflubeforetheUSCentersforDiseaseControlandPreventionbecausepeoplestartedusingthecompany’ssearchenginetolookupsymptoms.
Similarly,analysisofdatageneratedbymonitoringdevicesinintensivecareunitscanpickupsignsofnosocomial(hospital-acquired)infectionsbefore
thereareobservablesymptoms.Healthdataalsofitsthebigdatamouldintermsofvariability,withinformationoftenbeinginconsistent,incompleteandcontradictory,Crawfordnoted.IBM’sWatsoncomputer,withitsabilitytoreadandunderstandnaturallanguageandweighevidence,ismovingdecisionsupporttoanewlevel,allowingdoctorstoaccessandinterpretallthelatestevidenceandmakebetterdecisionsasaresult.Thisalsohighlightsthewayinwhichbigdatacanshiftanalyticsfromretrospectivetorealtime.
Summingup,Ralf Sudbrak, Scientific Coordinator, Max Planck Institute for Molecular Genetics notedthatconcernsaboutdataprotectionvaryfromtoomuchtotoolittle,dependingonthe
individual’sperspective.“Weneedtomakesurewearenottooprotective;itisnecessarytofindthebalancebetweentheneedfordataprotectionandtheuseofbigdata.Thereisahugeopportunityforbenefitstopatientsandsociety.”
Apre-requisitetorealisingthesebenefitsistocreatetherightframeworkfordatasharinganddataaccesstoenableresearch.Datacollectionanddataaccesscanbeforanumberofdifferentpurposes.Giventhis,thereisaneedforharmonisationofdataandharmonisationofpatientrecords.“Dataneedstobeintherightformat,”Ralfconcluded.
ErnstHafenoftheInstituteofMolecularSystemsBiology,ETHZurich