genetic engineering changing the living world a.selective breeding 1.hybridization 2.inbreeding...
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Genetic Engineering
Changing the Living WorldA. Selective Breeding
1. Hybridization
2. Inbreeding
B. Increasing Variation
1. Producing New Kinds of Bacteria
2. Producing New Kinds of Plants
Section 13-1
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Humans use selective breeding to pass desired traits on to the next generation.
While inbreeding assures a set of characteristics it also causes genetic defects as well. (blindness, hip displeasure in dogs and hemophilia in humans)
Wide variation is found in natural populations. Breeders can artificially introduce variation by inducing mutations.
Plants tolerate extra sets of chromosomes. Polyploidy has resulted in new species of plants.
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Manipulating DNAA. The Tools of Molecular Biology
1. DNA Extraction
2. Cutting DNA
3. Separating DNA
B. Using the DNA Sequence
1. Reading the Sequence
2. Cutting and Pasting
3. Making Copies
Section 13-2
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13–2
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Genetic Engineering
Making changes in the DNA code of a living organism
Restriction Enzyme
An enzyme that divides DNA at a specific sequence of nucleotides.
Gel Electrophoresis
Process to separate out gene fragments in a mixture using an electric current and polarity of the fragments.
Recombinant DNA
Combining DNA from different sources.
Polymerase chain reaction
Process that makes many copies of a particular gene
Genetic Engineering
Genetic Engineering = process in which a gene from the DNA of one organism is removed, and then transferred into the DNA of another organism
Boyle & Cohen (1973) - FIRST people to genetically engineer a new organism: Removed the gene for rRNA from a frog and inserted that gene into the DNA of a bacterium.RESULT: A bacteria that produced large amounts of frog rRNA
Genetic engineering involves the making of a new combination of DNA made from two or more different organisms
Genetic Engineering
IF you can cut out a gene, WHAT do you use to carry that gene into the cell of another organism???
Vector
= agent used to carry the gene of interest into another organism's cell
EXAMPLES of vectors: viruses, yeast or plasmids
PLASMID
= circular DNA molecules in bacteria that
can replicate (copy itself) independently from the single main chromosome in bacteria
Genetic Engineering
Bacterial plasmids are often used to make recombinant DNA.
– plasmids are loops of DNA in bacteria
– restriction enzymes cut plasmid and foreign DNA
– foreign gene inserted into plasmid
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Restriction enzymes cut DNA.
• Restriction enzymes act as “molecular scissors.” – come from various types of bacteria– allow scientists to more easily study and manipulate
genes– cut DNA at a specific nucleotide sequence called a
restriction site
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• Different restriction enzymes cut DNA in different ways.
– each enzyme has a different restriction site
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– some cut straight across and leave “blunt ends”
– some make staggered cuts and leave “sticky ends”
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• A restriction map shows the lengths of DNA fragments between restriction sites.
– only indicate size, not DNA sequence
– useful in genetic engineering
– used to study mutations
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– Smaller fragments move faster and travel farther than larger fragments.
– Fragments of different sizes appear as bands on the gel.
Gel Electrophoresis
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PCR uses polymerases to copy DNA segments.
• PCR makes many copies of a specific DNA sequence in a few hours.
target sequence of DNA
• PCR amplifies DNA samples.• PCR is similar to DNA replication.
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PCR is a three-step process.
• PCR uses four materials.– DNA to be copied– DNA polymerase– A, T, C, and G nucleotides– two primers
DNA strands
polymerase
nucleotides
primer 1
primer 2
Genetic Engineering
DNA strands
polymerase
nucleotides
primer 1
primer 2
• The three steps of PCR occur in a cycle.
– heat is used to separate double-stranded DNA molecules
– primers bind to each DNA strand on opposite ends of the segment to be copied
– DNA polymerase binds nucleotides together to form new strands of DNA
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Cell TransformationA. Transforming Bacteria
B. Transforming Plant Cells
C. Transforming Animal Cells
Section 13-3
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15–3
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Plasmid
A small circular DNA molecule used in bacteria transformation
Genetic Marker
A gene that identifies the plasmid from the foreign DNA
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Human Cell
Gene for human growth hormone
Recombinant DNA
Gene for human growth hormone
Sticky ends
DNA recombination
DNA insertion
Bacterial Cell
Plasmid
Bacterial chromosome
Bacterial cell for containing gene for human growth hormone
Section 13-3Figure 13-9 Making Recombinant DNA
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Genetic Engineering or recombinant DNA
• Connecting or recombining fragments of DNA from different sources– 1. Isolate foreign DNA fragment to be inserted
-Restriction enzymes- cut DNA strands at specific areas
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– 2. Attach DNA fragment to a carrierVector- means by which DNA from another species can
be carried into a host cello Biological vectors: viruses, plasmidso Mechanical vectors: micropipette, gene gun
– 3. Transfer into a host organism– Transgenic organism- plants and animals that contain
functional recombinant DNA
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Recombinant Examples
• E.Coli bacteria to produce indigo dye-jeans
• Growth hormone- dwarfism• Insulin-diabetes• Hemophilia- sheep milk has
clotting factor• Pest resistant plants
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Applications of Genetic EngineeringA. Transgenic Organisms
1. Transgenic Microorganisms
2. Transgenic Animals
3. Transgenic Plants
B. Cloning
Section 13-4
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15–4
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Biotechnology is a result of genetic engineering.
Transgenic Microorganisms
Used in disease research. They are easy to grow and reproduce rapidly.
Transgenic Animals
Used to improve the food supply by making animals stronger
Transgenic Plants
Genetically modified plants increase the food supply, and additionally are able to produce a naturally occurring herbicide.
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Cloning occurs in nature.
– bacteria (binary fission)– some plants (from roots)– some simple animals (budding, regeneration)
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Mammals can be cloned through a process called nuclear transfer.
– nucleus is removed from an egg cell– nucleus of a cell from the animal to be cloned is
implanted in the egg
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Cloning has potential benefits.
– organs for transplant into humans– save endangered species
Cloning raises concerns.– low success rate– clones “imperfect” and less healthy than original animal– decreased biodiversity
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A donor cell is taken from a sheep’s udder. Donor
Nucleus
These two cells are fused using an electric shock.
Fused Cell
The fused cell begins dividing normally.
EmbryoThe embryo is placed in the uterus of a foster mother.Foster
Mother
The embryo develops normally into a lamb—Dolly
Cloned Lamb
Egg Cell
An egg cell is taken from an adult female sheep.
The nucleus of the egg cell is removed.
Section 13-4Figure 13-13 Cloning of the First Mammal
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Genetic engineering produces organisms with new traits.
• A transgenic organism has one or more genes from another organism inserted into its genome.
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• Transgenic bacteria can be used to produce human proteins.– gene inserted into plasmid – plasmid inserted into bacteria– bacteria express the gene
• Transgenic plants are common in agriculture.– transgenic bacteria
infect a plant– plant expresses
foreign gene– many crops are now
genetically modified(GM)
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• Transgenic animals are used to study diseases and gene functions.
– transgenic mice used to study development and disease
– gene knockout mice used to study gene function
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• Human Molecular GeneticsA. Human DNA Analysis
1. Testing for Alleles
2. DNA Fingerprinting
B. The Human Genome Project1. Rapid Sequencing
2. Searching for Genes
3. A Breakthrough for Everyone
C. Gene Therapy
D. Ethical Issues in Human Genetics
Section 14-3
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14-3
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Testing for Alleles:
Alleles responsible for genetic disorders have a different DNA sequences than the normal counterpart.
Genetic testing: Genetic tests have been developed to spot the defective sequence. Other tests detect changes in restriction enzyme cutting sites or differences in lengths of normal and abnormal alleles.
Prenatal Testing
Amniocentesis = sample of fluid
surrounding the fetus is taken with a long, thin needle
Cells from the fluid can be grown in culture and
karyotype prepared
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Human Genome Project:
Started in 1990.
Objective: To sequence all human DNA.
Finished in June 2000.
First markers were found that allowed the DNA to be broken down to smaller segments.
Second: Private companies used a shot gun approach to sequence random segments.
Third: computers were used to find overlapping regions between the fragments to place them in order.
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• Gene sequencing is determining the order of DNA nucleotides in genes or in genomes.
• The genomes of several different organisms have been sequenced.
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Technology allows the study and comparison of both genes and proteins.
• Bioinformatics is the use of computer databases to organize and analyze biological data.
• DNA microarrays are used to study the expression of many genes at once.
• Proteomics is the study and comparison of proteins.
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DNA FingerprintsRestriction Fragment Length Polymorphism (RFLP) - used to
identify base sequences in our DNA
Restriction enzymes are used to cut DNA into fragments that have SPECIFIC lengths.
DNA of different people contain different nucleotides sequences – restriction enzymes cut the DNA from different people into pieces of DIFFERENT lengths.
Separate the pieces by gel electrophoresis - DNA hasnegative charge :smaller pieces move faster than larger pieces
This produces a series of bands = DNA fingerprint!! May use blood, hair, semen, bone - any cell with DNA.
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A DNA fingerprint is a type of restriction map.
• DNA fingerprints are based on parts of an individual’s DNA that can by used for identification.– based on noncoding regions of DNA– noncoding regions have repeating DNA sequences– number of repeats differs between people– banding pattern on a gel is a DNA fingerprint
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– Individual probabilities are multiplied to find the overall probability of two DNA fingerprints randomly matching.
– Several regions of DNA are used to make DNA fingerprints.
1 1 1 1500 90 120 5,400,000 1 chance in 5.4 million peoplex x = =
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• DNA fingerprinting is used in several ways.
– evidence in criminal cases
– paternity tests– immigration requests– studying biodiversity
– tracking genetically modified crops
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• Gene Therapy:• An absent or faulty gene is replaced by a normal
working gene.• Vector: Benign virus is modified with the working
gene then introduced into the body to start replicating the gene.
• Mixed results to date, it is still a high risk, experimental procedure.
• Ethical Issues:• Disease cure is generally accepted.• Bioengineering to produce “ideal” human is not and
becomes a societal discussion and decision question.
Genetic Engineering
Genetic screening can detect genetic disorders.
• Genetic screening involves the testing of DNA.– determines risk of having
or passing on a geneticdisorder
– used to detect specificgenes or proteins
– can detect some genesrelated to an increasedrisk of cancer
– can detect some genesknown to cause geneticdisorders
DMD N
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• Several experimental techniques are used for gene therapy.
– genetically engineered viruses used to “infect” a patient’s cells
– insert gene to stimulate immune system to attack cancer cells
– insert “suicide” genes into cancer cells that activate a drug
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• Scientists have concerns about some uses of genetic engineering.– possible long-term health effects of eating GM foods– possible effects of GM plants on ecosystems and
biodiversity