genomes are the long now (draft 1)
TRANSCRIPT
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GENOMES ARE THE LONG NOWMary Mangan, PhDOpenHelixFebruary 6, 2017
@mem_somerville on twitter
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ANSWERING AGE-OLD QUESTIONSALLOWING US TO ASK NEW ONES
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ANCIENT SAMPLES CARRY IMPORTANT INFORMATION
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THE NEVER-ENDING QUEST TO REWRITE THE TREE OF LIFE
www.rna-seqblog.com/the-never-ending-quest-to-rewrite-the-tree-of-lifewww.pbs.org/wgbh/nova/next/evolution/microbial-diversity
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HOW WE ORGANIZE GENOME DATA TODAY
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Copyright OpenHelix. No use or reproduction without express written consent6
ORGANIZATION OF GENOMIC DATACONCEPTUAL LAYOUT OF A GENOME BROWSER PAGE
Reference genome: base position numbersequence
Ann
otat
ion
Trac
ks
chromosome band
predicted genesphenotype and disease
evolutionary conservationSNPs and structural variation
gap locationsknown genes
repeated regions
microarray/expression data
more…
enhancer/promoter data
Links out to more data
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GENOME.UCSC.EDULIVE DEMO ATTEMPTED HERE (DEPENDS ON INTERNET CONNECTION)
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GENOME.UCSC.EDUDISCLOSURE: MY COMPANY HAS AN OUTREACH CONTRACT WITH UCSC GENOME BROWSER
TP53
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TP53
Zoomed out 1.5x
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FUTURE DIRECTIONS: PAN-GENOME DISPLAY
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PERSONAL/PRECISION GENOMICS& MISUSING GENOMICS
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DE-EXTINCTION SCIENCE
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