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    Histo Review 1 2004

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    Your Test

    Monday, 9/20 1:30 30questions from Microscopy to Cell

    Bio

    ~10Image-Based (LM and EM)

    Pass Level is 55-65% (Hell

    probably throw out some questions) 10%of your total grade

    Dr. B says:

    there will be 8 or 9 questions on

    EMs

    pay some attention to clinical refs inthe lectures, notes posted on Bb and

    in CH 1,2 in the text.

    Lecture notes and handouts!

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    Microscopy Resolution

    Eye = 200m = 0.2mm =200,000nm

    Light microscope: 0.2 microns

    (m)

    Electrons:

    Scanning EM: 2.5 nanometers

    Transmission EM: 1 nm,

    theoretically 0.5 nm

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    Staining Terminology

    Acidophilia: Reaction of cationic groups(protein amino grps.) with an acidic dye Proteins are acidophilic

    Basophilia: Reaction of anionic groups

    (phosphate, sulfate) with a basic dye Only Heterochromatin, Nucleoli, Ergastoplasm

    (RNA), and Extracellular Sulfate Sugar Moieties(GAGs) are highly basophilic

    Metachromasia: A change in the color of adye based upon high concentration of thatdyes ligand in a cell e.g. toluidine Blue stains mast cell granules

    purple- high [heparin sulfate]

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    H and E Stain

    H: Hematoxylin, basic

    dye, stains acidic groups

    (Heterochromatin,

    Glycosaminoglycans)

    blue.

    E: Eosin, acidic dye.

    Stains proteins red.

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    PAS (periodic acid-Schiff) Stain

    Stains reducing sugars red.

    (Cleaves Aldehyde Grps)

    Stains Glycogen, Mucus,

    Basement Membrane and

    Reticular Fibers

    PAS Reaction:

    - Periodic Acid cleavessugars into aldehyde

    groups. Aldehydes react with

    Schiff Reagent- RED

    Feulgen Reaction:

    - DNA (not RNA) is cleaved

    by HCl, reacts w/Schiff.

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    Silver Stain

    Stains Reticular Fibers and

    Basement Membrane Black.

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    Immunohistochemistry

    Enzyme-linked

    antibodies

    Targets specific

    proteins associatedwith disease

    Useful for diagnosis

    Example: oral tumor

    (condyloma) biopsy

    tests positive forHuman Papilloma

    VirusHPV+

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    Freeze Fracture

    E

    P

    The Plasma Membrane is Split

    in Half, making two faces,

    the E and P face. On

    Scanning EM, the P-face

    generally has more

    proteins associated.

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    Nucleus

    Chromatin

    Nucleolus

    Envelope/Matrix

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    Chromatin

    marginalkaryosome

    4 nm

    Orders of Chromatin Organization: Nucleosomefundamental packing unit = linker DNA +

    nucleosome bead (2 whorls of DNA + histones [4] + one otherhistone H1) -beads-on-a-string form

    30 nm chromatin fiber

    loops

    clusters of looped domains

    chromosome

    Amount of Euchromatin =

    Transcriptional Activity of the Cell!

    http://cellbio.utmb.edu/_vti_bin/shtml.dll/CELLBIO/NUCLEUS2.HTM/map
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    Nuclear envelope:

    Separates RNA synthesis fromRNA processing; preventsdamage from cytoskeleton

    Remember that nuclear outermembrane is contiguous withrough ER!

    Nuclear pore complex:

    Composed ofnucleoporins Allow small molecule entry by

    diffusion; large proteins,however, require importin,exportin (and both ATP and

    GTP)

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    Cell Surface Structures/

    Membrane Proteins Plasma Membrane

    Lipid Rafts/Caveolae

    Membrane Proteins

    Junctions, Ion Channels

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    Plasma Membrane Components

    Outer leaflet:

    SM, PC

    Inner Leaflet: PS, PI, PEtn

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    Caveolae

    -Not clathrin coated

    -Arise from Lipid Rafts (thickenings of PM)

    -Contain Cav-1, Cholesterol, Sphingolipids,

    certain GPI-anchored proteins

    -Activated by src-kinase

    -Important for potocytosis, transcytosis

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    Caveolae vs. Clathrin Coated Pits

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    Clathrin

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    Clathrin-Coated

    Pits/Vesicles Important for

    Receptor-Mediated

    Endocytosis Lysosomal enzyme

    targeting

    M6P receptor

    Secretory Vesicle

    Formation

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    Ion Channel Mutations/Diseases

    Myasthenia GravisMuscle weakness

    due to autoantibodies against the

    acetylcholine receptor Cystic FibrosisDefect in the Cl-

    channel CFTRleads to excessive

    phlegm and static infections

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    Glycocalyx Made up of Glycoproteins, Proteoglycans, and Glycolipids

    Remember that most sugars are on the outside of the cell.

    Membrane Proteins

    Integralhave transmembrane domains Peripheralhave noncovalent attachment to the

    membrane or an integral protein

    Lipid-anchoredCovalently bonded to either a

    phospholipid or a fatty acid (farnesyl, GPI, etc.)

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    Erythrocyte Membrane Skeleton

    Spectrin Filamentsattach to b-actin

    junctional complexes

    b-Actin bindsGlycophorin C

    Spectrin is held to themembrane by Ankyrin,Band 3 proteins

    HereditarySpherocytosis: Defectin one or more of theseproteins

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    Dystrophin and DMD in Muscle

    Cells

    Lack of functional dystrophin leads toDuchennes Musc. Dystrophy (DMD)

    Muscle weakening, pseudohypertrophy

    dystroglycans

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    Integrins

    Integral Membrane proteins that link the cell to the ECM.

    Have a and b subunits, many types found in different cells with different

    functions

    b2 integrinsfound on leukocytes

    avb3found on endothelial cells, smcs, plts Found in focal adhesions (with vinculin, actin) and hemidesmosomes (interm.

    fil., plectin).

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    Junctional Complex

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    Junctional Complex

    Zona Occludens: ZO-1,2, Occludin, Claudin

    Most Apical, Functions in preventing stuff from

    getting between two cells Zona Adherens:

    Cadherins, Catenins, Actin, Plakoglobin

    Ca++-dependent Cell-Cell adhesion. Very strong.

    Macula Adherens (Desmosome): Cadherins, Desmoglein, collin, Intermediate

    Filaments

    Virtually permanent cell-cell adhesion

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    Desmosome

    http://web.mit.edu/7.19/www/lecture7/JPEGS/Desmo.jpg
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    Gap JunctionsOne Connexon

    connects to a

    connexon in

    another cell.

    Each connexon

    is made of 6

    connexin

    subunits.

    Gap junctionsallow the

    selective

    passage of ions

    and small

    molecules.

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    Know the chart

    on page 13!

    Tight junction

    Prevents

    intercellular

    transport!

    Integrins

    Gap Junctions

    Connexin vs.

    connexon

    Structure of microvillivs. stereocilia vs. cilia

    vs. basal body vs.

    centriole!

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    The Cytoskeleton

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    Cytoskeletal elements

    Microtubules:- a- and b-tubulin form dynamic, polar filaments

    - about 20-25 nm in diameter

    - require GTP for assembly

    Intermediate filaments:-desmin, keratin, vimentin: expressed in different tissues

    - about 10 nm in diameter

    Microfilaments:

    - actin monofilaments- about 6-8 nm in diameter

    - require ATP for assembly

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    Microtubules

    Each fiber is a hollow cylinder

    Microtubules have polarity: a positive,fast-growing end and a slow-growingnegative end

    Soluble tubulin dimers bind end-to-end, alpha- to beta-

    Polymerization is dependent on GTPhydrolysis

    Colchecine, vincristine and otheralkaloids inhibit binding

    Associated proteins:

    Motor proteins: kinesin and dynein

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    Types of Intermediate filaments

    Types I and II: Acidic Keratinand Basic Keratin, respectively. Produced by different types of epithelial cells (bladder, skin, etc).

    Epidermolysis Bullosakeratin deficiency- blistering diseases

    Type III Intermediate filaments are distributed in a number of cell

    types, including:

    Vimentinin fibroblasts, endothelial cells and leukocytes; desmininmuscle; glial fibrillary acidic factor(GFAP)in astrocytes and other

    types of glia

    Type IV Neurofilament H (heavy), M (medium) and L (low).

    Type V Lamins

    Lamins are vital to the re-formation of the nuclear envelope after celldivision.

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    Cell Motors, Motility, and

    Mitosis

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    Microtubular

    Motors Kinesin:Moves from () end to(+) end.

    Dynein: Moves from (+) end

    to () end.

    ATPases

    Carry organelles along MTs

    (mitochondria, vesicles)

    (+) end of MTs is usually at

    the periphery of the cell, (-)

    end is usually near the MTOC

    centrally.

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    Dynein

    Found in cilia/flagellacause sliding of MTs gives

    beating motion

    Dynactinlinker between Dynein and other structures

    (centrosomes, actin, et al.)

    Kinesin

    Kinesin Iused in cells to transport membrane-bound organelles along microtubules. (+) directed

    Some Kinesin Related Proteins move cilia, organizemicrotubules, or bind DNA directly (chromokinesin)

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    What Molecular Motors Do

    Movement of organelles/vesicles from one part of thecell to another (e.g. from ER to Golgi)

    Cell Polarity: Bring different proteins to differentsides of cells (axon vs. dendrite, apical vs.basolateral)

    Flagellar/Ciliary function, maintenance

    Mitosis/Meiosis

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    The Mitotic Spindle

    Know your PMAT!

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    Clinical Correlations of MT

    Motors Microtubule-directed drugs (paclitaxel

    (Taxol), vincristine)stop mitosis, kill cancercells

    Kartageners Syndrome Dynein(or Kinesin)mutations Situs Inversus

    Sterility in males

    Sinus Infections Lissencephaly- dynein deficiency leading tosevere brain developmental deficiencies

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    Centrioles/Basal Bodies vs. Cilia

    Cilia/Flagella: 9*2 +

    2 Arrangement

    Centrioles/BasalBodies: 9*3

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    Molecular Motors

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    MyosinsActin Motors

    Many types, heavy chain is conserved.

    Myosin I- interacts with membranes,

    important for endocytosis, inner ear function Myosin IIfound in many types of cells,

    regulates cell contraction, locomotion,

    cytokinesis.

    Myosin Vfunctions in delivery of vesicles to

    membrane

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    Actin Microfilaments

    G-actin (globular subunit) is converted to F-actin

    (fibers) under certain conditions (WASP activation (wiskott-aldrich syndrome protein) (dont

    memorize) Actin binding proteins regulate actin assembly/disassembly

    (gelsolin, thymosin), regulation (troponin). and organization (fimbrin,

    alpha-actinin, filamin).

    Actin Microfilaments have a + end and aend

    similar to MTs.

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    Clinical Correlations of

    Actin/Myosin Cytochalasin D prevents F-actin elongation

    Phallotoxin (phalloidin) binds and freezes F-actin, prevents de-polymerization

    Latrunculin binds and inhibits G-actin

    Listeria and Shigella use actin to travel through the cell

    Usher Syndromemutation in Myosin VII, hearing loss, retinitispigmentosa (deaf/blind)

    Griscelli SyndromeMyosin V deficiencyalbinism

    http://www.nifg.org.uk/species/photos/ri.htm
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    Endomembrane System

    ER

    Golgi

    Lysosomes

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    Smooth ER

    -Steroid Production

    -Detoxification/ DrugMetabolism

    -Connected to rER

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    rER

    Interconnected

    tubules, vesicles

    and sacs

    Associates withribosomes,

    Protein synthesis

    http://cellbio.utmb.edu/cellbio/cit2.htm
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    ER, signal sequence, protein translation Hydrophobic sequence targets ribosome to ER

    SRP: signal recognition peptidebinds signal sequence and stops translation;ribosome translocates to ER

    SRP Receptor: SRP/ribosome/nascent protein binds to ER

    Sec61 protein translocation complex: signal sequence is inserted into ERmembrane

    Translation resumes, with growing peptide chain translocating across membrane

    BiP: protein chaperone aids in proper folding and assembly within ER

    Peptide is cleaved after signal sequence and released into lumen of ER

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    Quality control: ubiquitin-proteasome pathway

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    Protein Synthesis/ Signal Sequences

    P t i difi ti

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    Protein modification

    Co- vs. Post-translational Golgi is post-, ER is co-

    translational

    Golgi is functionallycompartmentalized;each cisternae containscertain enzymes thatcan modify proteins inspecific ways Glycosylation,

    phosphorylation,sulfation

    Proteolytic modification

    Glycolipid synthesis

    Sorting of vesicles;clathrin-coated

    pits/adaptors

    G

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    Golgi Maturation

    Vesicular transport

    Vesicles carry proteins

    toward trans-face

    Cisternal maturation

    Entire cisternae move toward

    PM and break up

    Combined

    Cisternae mature, but

    enzymes transported retro-

    anterograde as needed

    COP-I: retrograde

    transport- binds KDEL

    receptor

    COP-II:anterograde

    trans ort

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    Exocytosis

    Vesicles fuse with outer plasma

    membrane

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    Lysosomal Targeting

    *- KFERQ

    sequence is a

    destruction

    signal for

    senescentorganelles

    Clathrin

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    Lysosomes

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    Tay-Sachs Disease

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    Peroxisomes

    Small, Spherical Organelles Are more homogenous-appearing than lysosomes

    Contain Catalase, other enzymes

    Important for: Ethanol oxidation (liver)

    b-oxidation of fatty acids

    Have crystalloid inclusionsin non-humans Zellweger Syndrome: early death due to non-

    functional peroxisomes.

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    Mitochondria

    Originate from prokaryotes?

    Two membrane bilayers Cristae form from inner membrane

    Intermembrane space is

    contiguous with cristal lumen,contains H+ gradient

    Electron Transport Chain proteins,F1F0ATP synthase are in theinner membrane

    Matrix is within the innermembrane, houses the Krebs

    cycle Mitochondria have their own DNA,

    ribosomes, division process

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    Mitochondria and

    Apoptosis Opening of PTP

    (permeability transitionpore) leads to

    Cytochrome C escapefrom mito

    Cyt C activates Apaf-1,which activates the

    Caspase Cascade Intracellular proteases

    degrade cellularcomponents

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    Electron Micrographs

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    http://imc.gsm.com/integrated/maonline/maonline/ma/picts/20000/1000/200/21251.jpghttp://imc.gsm.com/integrated/maonline/maonline/ma/picts/20000/1000/200/21251.jpg
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    http://137.222.110.150/restricted/gallery/album94/junctional_complex_cuboidal_cell
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    http://137.222.110.150/restricted/gallery/album94/junctional_complex_cuboidal_cell