integrating transmart with genedata analyst™

Integrating tranSMART with Genedata Analyst™Jens HoefkensApril 29, 2014

© 2014 Genedata 2CONFIDENTIAL

Genedata Snapshot

Domain ExpertiseExperienced Ph.D. level experts coupled with efficient software engineering processes

Dedicated to the Life SciencesInnovative portfolio of enterprise systems supporting data rich & complex research processes

Global Reach150+ employees | Offices in Europe (Basel, Munich), North America (Boston, San Francisco) &

Asia (Tokyo)

Marquee Customer BasePharmaceutical, biotechnology, and other life science organizations

RootsEstablished in 1997 | Privately Owned | Headquartered in Switzerland


Marquee Customers

San Francisco

Munich Basel

Tokyo

19 of Top 20 Pharmas

Boston

5 of Top 6 Agrochemicals


Genedata Software Portfolio

Genedata Expressionist for Omics Data Management

Genedata Phylosopher

for Translational Medicine

Genedata Biologicsfor Biopharmaceutical R&D

Genedata Selector

for Strain Development

Genedata Analystfor Integrative Statistical Analysis

Genedata Screener for Plate-Based Screening


Genedata Analyst™

Genedata Analyst™ is

• a Software Platform• for Integrative Analysis• of Multi-omics Data• in Translational Research


Integration of Analyst with tranSMART

Reduce time to import, export, integrate, and analyze data from days to minutes


Omics data &

Clinical annotations

• Supports in-depth statistical analysis• Provides out-of-the-box integration with public data sources• Allows cross-study comparisons


Omics data &

Clinical annotations

• Provides technology-specific preprocessing and QC• Comprehensive technology and platform coverage• Integration with study management systems & ontologies• Extendable to new and emerging technologies & platforms


Technical Features

• Fast and scalable data streaming– Load 20 experiments with 50k values in 15 seconds– Experiments loaded concurrently within Analyst– Only 5 MB of memory required per stream

• Access mirrors study-based tranSMART security• Secure system-to-system communication

• Compatible with Oracle and PostgreSQL


Summary Genedata Analyst™

• Unified translational system provides teams with an research collaboration and data analysis platform

– Rich statistical toolbox to explore and analyze data– Scalability for interactive analysis of extremely large data sets– Integration with public omics data source– State-of-the-art software architecture for end-to-end traceability– Reduce time to import, export, integrate, and analyze data

• Visit us at Booth #232 for a live demo & discussions

[email protected] | [email protected] | [email protected] | [email protected]

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www.genedata.com

Genedata AGSwitzerland

Margarethenstrasse 384053 BaselSwitzerland

Genedata GmbHGermany

Fürstenrieder Strasse 281 81377 MunichGermany

Genedata Inc USA

East Coast Office750 Marrett RoadOne Cranberry HillSuite 403Lexington, MA 02421

West Coast Office 109 Stevenson Street4th FloorSan Francisco, CA 94105

Genedata KKJapan

1-7-11-408 Higashi-Gotanda Shinagawa-KuTokyo 141-0022Japan

integrating transmart with genedata analyst™

Technology

munich germany genedata

genedata kk japan

genedata analyst jens

data scalability

public data sources

public omics data source

large data sets integration

scalable data streaming