isolation and charecterization of caffeine degrading bacteria from coffee pulp

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Page 1: Isolation and charecterization of caffeine degrading bacteria from coffee pulp
Page 2: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Caffeine , a purine alkaloids naturally occuring in more than 60 plant species which has a wide application and it is also one of the major agro industrial wastes.

Page 3: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Coffee pulp and husk are major contributors of environmental pollution.• Caffeine in soil affects soil fertility.• Contamination of fresh water.• Effect on the physiological system.

Page 4: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Pseudomonas, Serratia,Klebsiella, Rhodococcus, Alcalignes, Aspergillus,Penicillium, Fusarium and Stemphylium

• Kurtzmann and Schwimmer - Penicillium roqueforti and Stemphylium sp..

• Brand et al - Aspergillus niger from coffee husk

• Dash and Gummadi - Pseudomonas putida from the soil of coffee plantation

Page 5: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• To isolate bacterium from coffee pulp.

•Ability to degrade caffeine.

•Transformation of Escherichia coli DH5α strain.

Page 6: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Crystal violet• Safranin stain

• Gram’s iodine

• Nitrate reduction discs• Oxidase discs

• Kovac’s reagent• Methyl red reagent

• α-naphthol 5%,• Potassium hydroxide 40%

• Nutrient agar• Simmons citrate agar• SIM agar• Skim milk agar• LB agar

• Tryptone broth • Urease broth• LB broth

• Mannitol motility media

• E. coli DH5α

• Molecular markers for DNA

Page 7: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Pure cultures• Sub cultures• Various morphological , physiological and Biochemical tests.

Page 8: Isolation and charecterization of caffeine degrading bacteria from coffee pulp
Page 9: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Bacterium was identified and authenticated as

Brevibacterium sp. (MTCC 10313) by the Institute of

Microbial Technology (IMTECH),Chandigarh ,

India.

Page 10: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• KH2PO4 3 g/L• Na2HPO4 6 g/L• NaCl 5 g/L• NH4Cl 2 g/L• glucose or sucrose 8 g/L• Distilled water 1L• In the end,a solution of MgSO4 (0.1 g/L distilled water) was added• pH 6.7

• Inoculate the bacterium .• Maintained at 37° C .

Page 11: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• 24h grown culture of Nutrient broth .

•10µl was inoculated into 100ml of minimal media ( 1- 8 g/L caffeine ) .

• Maintained control and blank .

• OD at 600nm at every 3h interval .

Page 12: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Birnboim and Doly alkaline hydrolysis method .

• Isolation of plasmid .

• Plasmid DNA suspended in TE buffer .

• 2% agarose gel .

Page 13: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Method of Mandel and Higa , and Cohen et al .

• Stab culture of E.Coli DH5α – LB Agar plate – LB broth – Over night incubation.

• 0.6 OD – Cooling – 1ml culture – 5000rpm – 4° C – Cell pellet – Autoclaved 0.1M CaCl2 .

• Repeat the step – 0.5ml of 0.1M CaCl2 .

• Competent cells – Isolated plasmid – Mix .

• Ice bath – Water bath – 500µl of LB broth – 37° C for 1h .

Page 14: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• LB Agar plates and Minimal media plates with different Caffeine concentrations ( 1-8 g/L ) .

• Control with and without caffeine .

• 10µl of transformed and non – transformed E.Coli DH5α cells were spread on the plates .

• Incubate at 37° C and compared after 24h .

• Counted colonies by using colony counter .

Page 15: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• Shake flask culture studies for the transformed E.Coli DH5α cells .

• Growth curves compared with non – transformed E.Coli DH5α and Brevibacterium sp..

Page 16: Isolation and charecterization of caffeine degrading bacteria from coffee pulp
Page 17: Isolation and charecterization of caffeine degrading bacteria from coffee pulp
Page 18: Isolation and charecterization of caffeine degrading bacteria from coffee pulp
Page 19: Isolation and charecterization of caffeine degrading bacteria from coffee pulp

• From the environmental perspective, it is important to explore new species of bacteria and fungi that are naturally capable of degrading caffeine so that these organisms could be exploited by genetic engineering to enhance the biodegradation of caffeine in the environment.

Page 20: Isolation and charecterization of caffeine degrading bacteria from coffee pulp