jon lau assistant headarchive.apan.net/meetings/busan03/materials/ws/escience/nationa… · –...
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NATIONAL GRIDNATIONAL GRIDSINGAPORESINGAPORE
Jon LauAssistant Head
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ContentContent
• Development in Grid Activities in Singapore
• Singapore’s National Grid• Pilot Platform• Virtualization of Technical Computing
Resource• Promotional Activities• International Interactions
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Development in Grid Development in Grid Activities in Singapore Activities in Singapore
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Overview of Grid ActivitiesOverview of Grid Activities
– Nanyang Technological University (NTU)– National University of Singapore (NUS)– Institute of High Performance Computing
(IHPC)– Genome Institute of Singapore (GIS)– Bioinformatics Institute (BII)
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• Maximize academic/research computing resources utilization.• Enable sharing of specialized and scarce hardware & software
resources.• Enable sharing of data in BioInformatics & other research works.• Facilitate collaboration.
• Linux clusters at NUS, NTU & IHPC connected to form a Grid testbed
• Globus Toolkit installed on all clusters• Packages: Condor, PBS, Sun Grid Engine
Earlier Grid Earlier Grid TestbedsTestbeds
[Courtesy of Tan Chee Chiang, NUS]
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NanyangNanyang Technological UniversityTechnological University
• Research Focus– Middleware development (with IHPC)– Application development
• Projects– MEG Data Visualisation (CyberMedia Center, Osaka Univ.)– Integration of SIBBS into Globus– Meta-scheduling, inter-operability, ...
• Collaborators– IHPC, BioMedGrid, ApGrid
• HPC Resources– PC Cluster with Cluster software– 0.5 teraflops HP (Compaq) Cluster– AP Science & Technology Centre (with Sun Microsystems)
[Courtesy of A/P Francis Lee, NTU]
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National University of SingaporeNational University of Singapore
• Research Focus– Middleware & Grid Programming
• Projects– ALICE (a Java-based Lightweight Grid)
• Collaborators– Centre for Remote Imaging, Sensing & Processing (CRISP),
Bioinformatics Institute, Nanyang Polytechnic (School of Life Sciences)
• Start-up: Atsuma Technology (www.atsuma.com)• HPC Resources:
– HP Alpha servers (GS320 and ES40), SGI server (Origin2000), Linux cluster, & SGI/HP/Sun workstations
[Courtesy of A/P Teo Yong Meng, NUS]
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Institute of Institute of High Performance ComputingHigh Performance Computing
• Research Focus– Middleware development (with NTU)
• Directory service, execution management services
• Projects– Infrastructure implementation (KISTI (Korea))– Grid Enabled Computational Electro Magnetics (British
Aerospace, Cardiff University, Swansea University & HP)– Environment to support simulations (such as CFD, CME, CEE,
MEMS)
• HPC Resources– IBM p690 Regatta, 17 & 13 CPU PIII Beowulf clusters
[Courtesy of Dr. Kurichi Kumar, IHPC]
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Genome Institute of SingaporeGenome Institute of SingaporeGrid ProjectsGrid Projects
• SNPs– Building an integrated SNPs database which takes information
from several SNPs databases & then aligns the information to a common genome sequence. The resulting information helps to identify SNPs which overlap & could be more significant for using as markers & building of primers.
• Protein-Protein Interactions Database (PPDB)– Building a system to help predict protein-protein interactions by
integrating many tools & data from several sources. We use information from domain fusion, text-mining, experimental databases, & phylogenetic profiling to construct putative protein-protein interaction networks.
[Courtesy of Heidi Dowst, GIS]
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Bioinformatics InstituteBioinformatics Institute• Research Focus
– Bioinformatics, grid software
• Projects– High Throughput Blast with National Cancer Centre– Analysis Pipeline of Zebrafish Genome with GIS– Annotation of Fugu Genome with IMCB & Sanger Center (UK)– Analysis of Arrhythmia– High Throughput Mass Spec Analysis with GIS– Bacterial Comparative Genomics with DMRI– Grid version of Clustlw– Cellware
• HPC Resources– Itanium cluster, Alpha, 64-CPU Pentium 3
[Courtesy of Larry Ang]
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SingaporeSingapore’’ssNational GridNational Grid
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National GridNational Grid
The NG is a national effort to:• Develop a Cyberinfrastructure for
science and engineering research and education; and
• Promote the use of Grid Computing for research, academia, commerce and industry
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NG NG OrganisationOrganisation ChartChartMTI
(A*STAR, EDB, JTC, RICs)
MTI(A*STAR, EDB,
JTC, RICs)
MINDEF(DSTA, DSO,
defence contractors)
MINDEF(DSTA, DSO,
defence contractors)
MITA(IDA, MDA)
MITA(IDA, MDA)
MOH(Hospitals)
MOH(Hospitals)
MOE(Schools)MOE
(Schools)IHLs
(NUS, NTU & Polys)
IHLs(NUS, NTU &
Polys)
National Grid Steering Committee (NGSC)Chairman: Mr Peter Ho, PS (Defence)
National Grid Steering Committee (NGSC)Chairman: Mr Peter Ho, PS (Defence)
Network WG
Security WG
Middleware WG
Applications WG
Governance/Policy WG
Physical Sciences
VGC
National Grid Operations Centre
(NGOC)
National GridOffice(NGO)
National GridOffice(NGO)Facilitates &
coordinates activities
National Grid Competency
Centre (NGCC)Life Sciences
VGC….
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NG OfficeNG Office
• Started:– Jan 2003 with 2½ persons
• Functions:– Secretariat to NG Steering Committee– Facilitate & co-ordinate activities of Working
Groups & Virtual Grid Communities– Develop NG Master Plan
– Act as a catalyst to achieve the NG goal
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National GridNational GridPilot PlatformPilot Platform
(NGPP)(NGPP)
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Pilot Platform for Grid ComputingPilot Platform for Grid Computing
“Conservative” approach to demonstrate the feasibility of grid computing:
• Use existing facilities as much as possible• Co-funding by stakeholders• Performance indicators for review• Dovetails with a strategic research program on
collaborative large-scale computing
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NG Pilot PlatformNG Pilot Platform
Itanium 2LinuxSMA
Sun FireIntel Pentium 4
SolarisLinux
NTU
Intel Xeon ClusterLinuxNUS
Intel Xeon ClusterItanium
Sun
LinuxItaniumSolaris
One-North(BII & GIS)
IBM RegattaAIXIHPC
PlatformOSEntity
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NG Pilot PlatformNG Pilot Platform
• Connecting up– Institute for Higher Performance Computing
(IHPC)– One-North which has Bioinformatics Institute
(BII) and Genome Institute – National University of Singapore (NUS)– Nanyang Technological University (NTU)– Singapore-MIT Alliance (SMA)
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NG Pilot PlatformNG Pilot Platform
• Co-funding from stakeholders – Agency for Science, Technology and
Research (A*STAR)– Defense Science Technology Authority
(DSTA)– Economic Development Board (EDB)– Infocomm Development Authority (IDA)– National University of Singapore (NUS)– Nanyang Technological University (NTU)– Singapore-MIT Alliance (SMA)
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NG Pilot PlatformNG Pilot Platform
• Support from Vendors– CISCO– DELL– Hewlett Packard– IBM– Intel– Singapore Computer Systems– StarHub– Sun Microsystems
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Thematic Strategic Research Thematic Strategic Research Programme (TSRP) onProgramme (TSRP) on
““GRID GRID Computing Computing -- Network, Platform, Network, Platform, Middleware and ApplicationsMiddleware and Applications
• A thematic approach for funding of Strategic Research Programmes by the Science & Engineering Research Council under A*STAR
• Fund Grid R&D projects which include research on Grid Enabling technologies (i.e. network, security, middleware, & tools).
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Virtualization/Sharing/Aggregation Virtualization/Sharing/Aggregation ofof
Technical Computing Resource Technical Computing Resource on theon the
National Grid Pilot PlatformNational Grid Pilot Platform
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Survey onSurvey onScientific Computing Hardware ExpenditureScientific Computing Hardware Expenditure
Survey:• Survey among IHLs and RICs for the past 5 years
(1998 – 2002).• Survey of hardware bought. It does not include
cost of maintenance, manpower costs and software costs.
Assumptions:• Based on 40% savings when utilization is
increased by virtualizing resources.
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Survey onSurvey onScientific Computing Hardware ExpenditureScientific Computing Hardware Expenditure
S$40m
1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008
Year
Cos
t
Projected Expenditure on HPCWithout Grid Infrastructure
Projected Expenditure on HPCWith Grid Infrastructure
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Survey onSurvey onScientific Computing Hardware ExpenditureScientific Computing Hardware Expenditure
Findings:• Hardware replacements occurs in a 4 year cycle.• Savings of between 20% - 30% over next 5 years.• The amounts indicated are probably less than actual expenditure
as it is impossible to capture every items purchased.More savings expected:• Bandwidth costs goes down.• Additional savings from software aggregation and savings in
manpower and maintenance costs.Other benefits:• Better results via collaboration.• Ability to handle massively computational jobs.• Attract investments in Life Sciences.
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Promotional ActivitiesPromotional Activities
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Organized by :
Supported by :
Sponsored by :
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Physical Sciences VGC SymposiumPhysical Sciences VGC Symposium
• Co-organised by NUS, NTU, IHPC and NG Office
• 10 papers submitted
• More than 100 participants
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Grid Competition for IHL studentsGrid Competition for IHL students
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International InteractionsInternational Interactions
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International InteractionsInternational InteractionsKorea/JapanKorea/Japan
• A*STAR led delegation visited Korea and Japan from 12 – 15 May 2003– Korea: KISTI, Seoul University, Yonsei University,
Ministry of Information & Communication (MIC) and IBM & HP.
– Japan: IBM Tokyo Research Lab, GTRC-AIST, NTT Data Corp, METI.
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International InteractionsInternational InteractionsUK eUK e--ScienceScience
• A*STAR and National Grid visited UK e-Science Centresin July 2003.
• Singapore Tissue Network collaboration with Oxford University.
• NTU collaboration with University of Southhampton and other e-Science centres.
• IHPC collaboration with BEA, Cardiff University, HP Lab Bristol, University of Wales, Swansea, Welsh e-Science Centre (GECEM).
• IHPC collaboration with Rolls Royce.• A delegation from Singapore will be attending “all-
hands” meeting at Nottingham, UK in September 2003.
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International InteractionsInternational InteractionsUSA USA TeraGridTeraGrid
• An NGSC delegation will be visiting USA TeraGrid sites in September 2003– Argonne National Laboratory (ANL)– National Center for Supercomputing
Applications (NCSA)– National Science Foundation (NSF)– San Diego Supercomputing Centre (SDSC)
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Modest beginning
Milestones of NGMilestones of NG
Sep 02
Visit to Japan and Korea
Jan 03
NG Office(2-1/2 staff)Formed
NG O submitted proposal on TSRP
for Grid Computing
NG O organized 1st
Physical Sciences VGC Symposium
Jul 03
NG SCFormed
PP business Plan approved
Aug 03 Sep 03 Oct 03June 03
To award PP contracts
UK e-ScienceTrip
Workshop on TSRP for Grid
ComputingTo
Launch PP
Apr 03 May 03
Consulting, buy-ins, promotion
Accelerating developments
UK e-Science‘all-hands’
Visit to USATeraGrid
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The Way AheadThe Way Ahead
• International Collaborations/MOUs• Strengthening of NG Pilot Platform• Improve middleware, and the provision
of Grid operation/support services• Encourage Virtual Grid Communities
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AcknowledgementsAcknowledgements• A/P Francis Lee ([email protected]), School of Computer
Engineering, NTU• A/P Teo Yong Meng ([email protected]), Computer
Science Department, NUS• A/P Tan Tin Wee ([email protected]), Bioinformatics Centre,
Dept. of Biochemistry, NUS• Tan Chee Chiang ([email protected]), Computer Centre, NUS• Dr. Kurichi Kumar ([email protected]), Institute of High
Performance Computing• Heidi Dowst ([email protected]), Genome Institute of Singapore• Larry Ang ([email protected]), Bioinformatics Institute
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The EndThe End
For more information, contact:
National Grid Office21 Heng Mui Keng Terrace
Singapore 119613
http://www.ngp.org.sg