kindvall, oskar lect03b

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Oskar Kindvall (second) lecture on Tuesday, Sept 15, 2009, for the Biodiversity Informatics Course, a Swedish Taxonomy Initiative (Svenska Artprojektet) course at the Swedish Natural History Museum, Stockholm, supported by the Swedish Species Service (ArtDatabanken) and the Swedish GBIF node.

TRANSCRIPT

Page 1: Kindvall, Oskar Lect03b

Names and Taxonomic ConceptsObject model of taxa and related information

Oskar Kindvall

Page 2: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 3: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 4: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 5: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 6: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 7: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 8: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 9: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, komments

Page 10: Kindvall, Oskar Lect03b

What do we need?• Taxon objects with unique ID that can be linked to data

(observations, collected specimens, images, generalizations, expert opinions)

• Recommended names• List of synonyms, alternative spellings etc.• Taxonomic hierarchies (taxon tree nodes)

• Taxonomic sort order values• Taxonomic category information• Taxonomic change history information• Pointers to inclusive taxa• References, comments

Page 11: Kindvall, Oskar Lect03b

Taxon object model

Page 12: Kindvall, Oskar Lect03b

TaxonObject

TaxonIdRecommended scientific nameRecommended common nameSynonymsOther namesLanguageSort orderTaxon categoryTaxon change statusIs replaced byValidity (Date0, Date1)CommentsReferences

Page 13: Kindvall, Oskar Lect03b

TaxonObject

TaxonListList of TaxonObjects

Items (TaxonObjects)Count

Page 14: Kindvall, Oskar Lect03b

TaxonObject

TaxonListList of TaxonObjects

Items (TaxonObjects)Count

TaxonTreeNode

Taxon (TaxonObject)Parent (TaxonObject)Children (TaxonTreeNodes)

Page 15: Kindvall, Oskar Lect03b

TaxonObject

Taxon information object

Taxon observation object

ObsservationIdTaxonLocalityDate0Date1Observer

TaxonInformationIdTaxonIndividual CategoryDatePeriodFactorReference

Page 16: Kindvall, Oskar Lect03b

TaxonObject

TaxonIdRecommended scientific nameRecommended common nameSynonymsOther namesLanguageSort orderTaxon categoryTaxon change statusIs replaced byValidity (Date0, Date1)CommentsReferences

TaxonNameObject

TaxonNameIdTaxonIdNameAuthorYearLanguageNameTypeUseValidity (Date0, Date1)CommentsReference

TaxonNameListList of TaxonNameObjects

Items (TaxonNameObjects)Count

Page 17: Kindvall, Oskar Lect03b

TaxonObject

TaxonIdRecommended scientific nameRecommended common nameSynonymsOther namesLanguageSort orderTaxon categoryTaxon change statusIs replaced byValidity (Date0, Date1)CommentsReferences

TaxonCategoryObject

TaxonCategoryIdNameLanguageSort orderIsTaxonomicIsStandard

TaxonCategoryListList of TaxonCategroyObjects

Items (TaxonCategroyObjects)Count

Page 18: Kindvall, Oskar Lect03b

TaxonObject

TaxonIdRecommended scientific nameRecommended common nameSynonymsOther namesLanguageSort orderTaxon categoryTaxon change statusIs replaced byValidity (Date0, Date1)CommentsReferences

TaxonChangeId Name Swedish name

-6 Graded Graderad

-4 Split Splittrad

-2 Lumped Lumpad

-1 Removed Raderad

0 Not modyfied Inmatning

2 Lumping Lumpning

4 Splitting Splittring

6 Grading Gradering

Page 19: Kindvall, Oskar Lect03b

TaxonObject

TaxonIdRecommended scientific nameRecommended common nameSynonymsOther namesLanguageSort orderTaxon categoryTaxon change statusIs replaced byValidity (Date0, Date1)CommentsReferences

List of Taxon objects

Page 20: Kindvall, Oskar Lect03b