lab challenge: how will we determine the taxonomy of the microbes we find?

28
Lab Challenge: How will we determine the taxonomy of the microbes we find?

Upload: clemence-daniel

Post on 16-Jan-2016

217 views

Category:

Documents


3 download

TRANSCRIPT

Page 1: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Lab Challenge: How will we determine the

taxonomy of the microbes we find?

Lab Challenge: How will we determine the

taxonomy of the microbes we find?

Page 2: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Traditional ClassificationTraditional Classification

Chapter 26, 27 and 28Understanding the 3 Domain;

Kingdom System with a focus on Bacteria and Archaea

Chapter 26, 27 and 28Understanding the 3 Domain;

Kingdom System with a focus on Bacteria and Archaea

Page 3: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Chapter ReferencesChapter References

HEY!!! Let’s make this abundantly CLEAR---when you see references to chapters, READ THEM! They are your HOMEWORK!

Chapter 26 and 27 (selections) Reading Tips - Don’t read every word. Skim

over all headings! Then, look for the parts of reading that match your notes

Take NOTES by making a powerpoint!

HEY!!! Let’s make this abundantly CLEAR---when you see references to chapters, READ THEM! They are your HOMEWORK!

Chapter 26 and 27 (selections) Reading Tips - Don’t read every word. Skim

over all headings! Then, look for the parts of reading that match your notes

Take NOTES by making a powerpoint!

Page 4: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Unity: Characteristics of Living Things

Unity: Characteristics of Living Things

Made of Cells Obtains materials

and use energy Grow and

Develop Reproduce

Made of Cells Obtains materials

and use energy Grow and

Develop Reproduce

Respond to Stimuli

Maintain Homeostasis

Based on a Genetic Code

Evolve

Respond to Stimuli

Maintain Homeostasis

Based on a Genetic Code

Evolve

Page 5: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Hierarchical Organization

Hierarchical OrganizationBinominal Nomenclature:2 word naming system based on Genus species

Did king philip come over for good soup?

Shows relationships…what are they based on?

Binominal Nomenclature:2 word naming system based on Genus species

Did king philip come over for good soup?

Shows relationships…what are they based on?

Page 6: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Diversity: How can these characteristics show the diversity of

living things?

Diversity: How can these characteristics show the diversity of

living things?

Page 7: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Focu

s on

Bact

eri

aFo

cus

on

Bact

eri

aAll living things are MADE of CELLS, but size, shape, or arrangement may vary

Page 8: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Focu

s on

Bact

eri

aFo

cus

on

Bact

eri

a

Does the naming system make sense?

Page 9: Lab Challenge: How will we determine the taxonomy of the microbes we find?

(a) Gram-positive bacteria: peptidoglycan traps crystal violet.

Gram-positivebacteria

Peptido-glycanlayer

Cellwall

Plasmamembrane

10 m

Gram-negativebacteria

Outermembrane

Peptido-glycanlayer

Plasma membrane

Cellwall

Carbohydrate portionof lipopolysaccharide

(b) Gram-negative bacteria: crystal violet is easily rinsed away, revealing red dye.

Figure 27.3

Gram stainingGram staining• Make up of cell structures is also a

distinguishing characteristic

• Cells with peptidoglycan in their walls stain darker

• Make up of cell structures is also a distinguishing characteristic

• Cells with peptidoglycan in their walls stain darker

Page 10: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Response to environmentResponse to environment

Notetaking: what should you write down about this visual slide?

Notetaking: what should you write down about this visual slide?

Page 11: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Obtaining energyObtaining energy

Nutrition is one important characteristic that allows us to compare.

Into which group do you think our cheese microbe will fit?

Nutrition is one important characteristic that allows us to compare.

Into which group do you think our cheese microbe will fit?

Page 12: Lab Challenge: How will we determine the taxonomy of the microbes we find?

New characteristics force changes in classificationNew characteristics force changes in classification

What was the 2 kingdom model?

The 5 kingdom model?

How do the Domains and the current 6 kingdom model relate?

What’s the current debate?

What was the 2 kingdom model?

The 5 kingdom model?

How do the Domains and the current 6 kingdom model relate?

What’s the current debate?

Page 13: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Role of technology Role of technology

Page 14: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Using Molecular DataUsing Molecular Data

In 1977, Carl Woese used molecular data from ribosomal RNA to classify microbes. Previously, microbes classification was limited due to their lack of identifiable characteristics.

Woese’s work led to the current three “domain” system of classification: Archaea, Bacteria, Eukarya

In 1977, Carl Woese used molecular data from ribosomal RNA to classify microbes. Previously, microbes classification was limited due to their lack of identifiable characteristics.

Woese’s work led to the current three “domain” system of classification: Archaea, Bacteria, Eukarya

http://dericbownds.net/uploaded_images/microbes2.gif

http://aboundlessethic.com/wp-content/uploads/2007/10/treeoflife.gif

Page 15: Lab Challenge: How will we determine the taxonomy of the microbes we find?

3 Domains3 Domains

Page 16: Lab Challenge: How will we determine the taxonomy of the microbes we find?

The 3 domains vary in how organisms display the characteristics of living things

See Table 27.2

Page 17: Lab Challenge: How will we determine the taxonomy of the microbes we find?
Page 18: Lab Challenge: How will we determine the taxonomy of the microbes we find?

What’s the difference between eubacteria and

archaebacteria?

What’s the difference between eubacteria and

archaebacteria? Archaebacteria are more

closely related to eukaryotes. Cell walls

Eubacteria: Material--peptidoglycan

Archaebacteria: Other materials

Archaebacteria are usually extremophiles Halophiles Thermophiles

Archaebacteria are more closely related to eukaryotes.

Cell walls Eubacteria: Material--

peptidoglycan Archaebacteria: Other

materials Archaebacteria are usually

extremophiles Halophiles Thermophiles

Page 19: Lab Challenge: How will we determine the taxonomy of the microbes we find?

How closely related are the kingdoms?

How closely related are the kingdoms?

Page 20: Lab Challenge: How will we determine the taxonomy of the microbes we find?

EukaryotesEukaryotes

Key Characteristic= Nutrition

If we use this as the basis, are fungi more closely related to animals or plants?

Key Characteristic= Nutrition

If we use this as the basis, are fungi more closely related to animals or plants?

Fungi: Heterotrophic decomposers

Animals: Heterotrophic consumers

Plants: Photoautotrophs

Fungi: Heterotrophic decomposers

Animals: Heterotrophic consumers

Plants: Photoautotrophs

Page 21: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Problems with using characteristics

Problems with using characteristics

Maybe cell wall shows a better relationship.

Does this agree with your previous hypothesis?

Maybe cell wall shows a better relationship.

Does this agree with your previous hypothesis?

Plants: Cellulose Fungi: Chitin

(although some have no cell wall)

Animals: No cell wall

Plants: Cellulose Fungi: Chitin

(although some have no cell wall)

Animals: No cell wall

Page 22: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Chitin vs. CelluloseChitin vs. Cellulose

Note: Animals do not use chitin for a cell wall but can manufacture chitin for an exoskeleton…what do they need to make chitin?

Note: Animals do not use chitin for a cell wall but can manufacture chitin for an exoskeleton…what do they need to make chitin?

Page 23: Lab Challenge: How will we determine the taxonomy of the microbes we find?

What do the genes tell us?What do the genes tell us?

General consensus: Fungi & Animals share most recent Common Ancestor.

Jury is still out though…

General consensus: Fungi & Animals share most recent Common Ancestor.

Jury is still out though…

Page 24: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Active Reading ActivityActive Reading Activity

Read and take notes to answer a question…what information/vocab are important to that question!

Read and take notes to answer a question…what information/vocab are important to that question!

Section 28.1

Is the protista kingdom MONOPHYLETIC?

(all share a common ancestor)

Section 28.1

Is the protista kingdom MONOPHYLETIC?

(all share a common ancestor)

Page 25: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Kingdom Protista=ProblemKingdom Protista=Problem

Page 26: Lab Challenge: How will we determine the taxonomy of the microbes we find?

ProtistsProtists

Are all protists closely related to eachother?

Are all protists closely related to eachother?

Page 27: Lab Challenge: How will we determine the taxonomy of the microbes we find?

ActivityActivity

Take the information from your reading & notes and fill out the kingdom graphic organizer that you did in 9th grade!

Take the information from your reading & notes and fill out the kingdom graphic organizer that you did in 9th grade!

Discussion: Is this memorization?

Discussion: Is this memorization?

Page 28: Lab Challenge: How will we determine the taxonomy of the microbes we find?

Direction…Direction…

Later we will look at classification of the animal kingdom.

Later we will look at classification of the animal kingdom.

As we go through the year, we will see the importance of understanding classification of plants, fungi, and protists.

As we go through the year, we will see the importance of understanding classification of plants, fungi, and protists.