lesto - a gis toolbox for lidar empowered sciences

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1 Bozen-Bolzano Free University of /21 A GIS BASED TOOLBOX FOR FORESTRY ANALYSIS COMPARISON OF METHODOLOGIES Andrea Antonello, Alessandro Andriolo, Floreancig Valentino, Franceschi Silvia, Comiti Francesco, Tonon Giustino LESTO LiDAR Empowered Sciences Toolbox Opensource 2013-09-17 IX Congresso Nazionale SISEF - Bolzano Libera Universita' di Bolzano

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My presentation given about the work done at the University of Bolzano on LESTO, the upcoming GIS toolbox for LiDAR based sciences, currently focused on forestry analyses.

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Page 1: LESTO - a GIS toolbox for LiDAR empowered sciences

1Bozen-Bolzano

Free University of

/21

A GIS BASED TOOLBOX FOR FORESTRY ANALYSISCOMPARISON OF METHODOLOGIES

Andrea Antonello, Alessandro Andriolo, Floreancig Valentino, Franceschi Silvia,

Comiti Francesco, Tonon Giustino

LESTOLiDAR Empowered Sciences Toolbox Opensource

2013-09-17 IX Congresso Nazionale SISEF - BolzanoLibera Universita' di Bolzano

Page 2: LESTO - a GIS toolbox for LiDAR empowered sciences

2Bozen-Bolzano

Free University of

/21 The research needsFORLIDAR, Estimation of Alpine forests structure and biomass

and their potential role in increasing flood hazards by using

LiDAR data

FusionLastools

Bibliographic research

Field data on 15 plots

Dedicated LiDAR flight

Page 3: LESTO - a GIS toolbox for LiDAR empowered sciences

3Bozen-Bolzano

Free University of

/21 The research needsFORLIDAR, Estimation of Alpine forests structure and biomass

and their potential role in increasing flood hazards by using

LiDAR data

FusionLastools

Bibliographic research

Field data on 15 plots

Dedicated LiDAR flight

development of

dedicated tools

Page 4: LESTO - a GIS toolbox for LiDAR empowered sciences

4Bozen-Bolzano

Free University of

/21 Modules overview

RasterTops extraction

Local Maxima

Crown extraction

Popescu

Region growing

Watershed

Pointcloud

Tops extraction

Local maxima

Crown extraction

Segmentation

Gener

al

las re

ading

/writ

ing

las sp

atial

inde

xing

norm

aliza

tion

filter

s

morph

ers

Derive

d

CHM ex

tracti

on /

DSM

Axell

son - a

dapt

ive tin

Las t

o ra

ster i

nter

p. (e

x. ID

W)

Las t

riang

ulatio

n

Page 5: LESTO - a GIS toolbox for LiDAR empowered sciences

5Bozen-Bolzano

Free University of

/21 Las data indexing

Las reading/writing/indexing

6GB of data

Page 6: LESTO - a GIS toolbox for LiDAR empowered sciences

6Bozen-Bolzano

Free University of

/21

Las reading/writing/indexingmain spatialindex on files

6GB of data

use of a unique spatially indexed file

per file dataspatial index

*.las *.las *.las

Las data indexing

6GB of data

Page 7: LESTO - a GIS toolbox for LiDAR empowered sciences

7Bozen-Bolzano

Free University of

/21 Las data indexing

use a shapefile to access any point cloud data in a folder of las data

Page 8: LESTO - a GIS toolbox for LiDAR empowered sciences

8Bozen-Bolzano

Free University of

/21 Las data indexing

Page 9: LESTO - a GIS toolbox for LiDAR empowered sciences

9Bozen-Bolzano

Free University of

/21 Las data indexing

h [m]

coun

t

lowercanopylayer

highercanopylayer

Vertical extraction: height distribution

Page 10: LESTO - a GIS toolbox for LiDAR empowered sciences

10Bozen-Bolzano

Free University of

/21 Raster Tops/Crowns extraction

- normalization of data (DSM-DTM)- inverting (watershed)- thresholding- gaussian (or similar) smoothing- production of a custom DTM (Adaptive tin)- use of morphing techniques

Data preprocessing modules

Page 11: LESTO - a GIS toolbox for LiDAR empowered sciences

11Bozen-Bolzano

Free University of

/21 Raster Tops/Crowns extraction

Tops extraction modules- local maxima- circular or square window- fixed window or height dependent window (Popescu)- morphing and normalization

Page 12: LESTO - a GIS toolbox for LiDAR empowered sciences

12Bozen-Bolzano

Free University of

/21 Raster Tops/Crowns extraction

Crown extraction modules- Popescu circles (based on height)- Watershed (Soile)- Region growing

Page 13: LESTO - a GIS toolbox for LiDAR empowered sciences

13Bozen-Bolzano

Free University of

/21 Pointcloud extraction

Tree segmentationSingle tree approach, extraction of points for each tree

A

B dummyC

D

dmin1 dmin2

#1 #2

A

B dummyC

D

dmin1 dmin2

#1 #2

dt (r)

A New Method for Segmenting Individual Trees from the Lidar Point CloudWenkai Li, Qinghua Guo, Marek K. Jakubowski and Maggi Kelly

Page 14: LESTO - a GIS toolbox for LiDAR empowered sciences

14Bozen-Bolzano

Free University of

/21 Pointcloud extraction

Tree segmentationSingle tree approach, extraction of points for each tree

Page 15: LESTO - a GIS toolbox for LiDAR empowered sciences

15Bozen-Bolzano

Free University of

/21 Pointcloud extraction

Tree segmentationSingle tree approach, extraction of points for each tree

Page 16: LESTO - a GIS toolbox for LiDAR empowered sciences

16Bozen-Bolzano

Free University of

/21 What is LESTO?- Open Source

- GIS aware

- library dedicated to

- sciences that make use of

- LiDAR data

LESTOLiDAR Empowered Sciences Toolbox Opensource

Maintained by the team of prof. Tonon

at the Faculty of Science and Technology

at the Free University of Bolzano.

Page 17: LESTO - a GIS toolbox for LiDAR empowered sciences

17Bozen-Bolzano

Free University of

/21 LESTO's "User Interface"

LESTOLiDAR Empowered Sciences Toolbox Opensource

uDigopen source desktop GIS

Spatial Toolbox of uDiguserfriendly toolbox for processing libraries

Page 18: LESTO - a GIS toolbox for LiDAR empowered sciences

18Bozen-Bolzano

Free University of

/21 Handle heavy processing

Geographic scriptingLeave the computer there to work for you

Page 19: LESTO - a GIS toolbox for LiDAR empowered sciences

19Bozen-Bolzano

Free University of

/21 Future plans

- -

the first tools in the toolbox are forestry relatedand particularly dedicated to a single tree approach to calculate the forest structure biomassthe toolbox is open to contributions on any LiDAR related(future might even bring roads or buildings extraction)

- -

(...depending on the results on the validations in progress...)

stabilization and release of the current modulesdata quality analysis (i.e. which data quantity/quality is necessary to gain certain results?)

future developments will bring:

Page 20: LESTO - a GIS toolbox for LiDAR empowered sciences

20Bozen-Bolzano

Free University of

/21 Open and shared approach

LESTO will be released under Open Source License(GPL v3) on the JGrasstools website after the first round of deep testing+fixing.

The open science approach is a natural choice for ourteam and we think it is in general for a university department.

Our thoughts reflect the "think global, fix local"approach, and even if the tools are released globally,they are meant in first place to be used by our professionals and local administration on the territory.

Page 21: LESTO - a GIS toolbox for LiDAR empowered sciences

21Bozen-Bolzano

Free University of

/21

Useful links:

LESTOLiDAR Empowered Sciences Toolbox Opensource

http://www.jgrasstools.orghttp://www.udig.eu