molecular diffusion in micro-mri: friend or foe?iramis.cea.fr/meetings/nmri/talks/weiger.pdfall 3...
TRANSCRIPT
![Page 1: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/1.jpg)
Molecular diffusion in micro-MRI:
friend or foe?
Markus Weiger
Bruker BioSpin AG, Faellanden, Switzerland
Bruker BioSpin MRI GmbH, Ettlingen, Germany
3rd nano-MRI 2010 Conference, 12-16 July 2010, Domaine du Tremblay
![Page 2: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/2.jpg)
Introduction
• Conventional MRI (inductive detection, gradient encoding)
• Target: cell layers
• Spatial resolution: 10 – 1 µm, 3D isotropic
• Limitations
• SNR
• Diffusion (cell fluids)
• Approaches to diffusion effects
• Foe: Minimise
• Friend: Utilise
![Page 3: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/3.jpg)
Ø
1∝SNR
Ø
Signal-to-Noise
∆
B0
47
0BSNR ∝
3
1
∆∝SNR
T TSNR ∝
×1/10
×1/10
×3
1/103
10
6.8
×214 14.6
![Page 4: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/4.jpg)
Molecular Diffusion
x ∝ B ∝ ∆Ф
Ф = Σ ∆Ф
t
RF
G
Ensemble average:
−∝ 322
3
1exp tGDS γ
( )DtO=∆
![Page 5: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/5.jpg)
Foe: Diffusion affects resolution and SNR
FID PSF
k-space real space
Frequency encoding
t
RF
G
AQ
GAQSNR
1∝∝
resolution versus SNR loss
∆−∝
3
3
3exp
G
DS
γπ
![Page 6: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/6.jpg)
Constant Time Imaging (CTI)
Phase encoding
RF
G
AQ
All 3 dimensions
According to T2*
CTI with large G:
• No resolution loss
• No SNR loss
• Robust against B0 off-resonance
G [G/cm]
Relative resolution loss
10 %
S. Choi, X. W. Tang, D. G. Cory, Int J Imaging Syst Technol 8, 263 (1997)
![Page 7: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/7.jpg)
Dedicated Planar Probe Design
Multi-turn surface coil
Ø = 1000 – 20 µm
micro-fabricated
X Y Z
x
z
y
Planar gradient
6500 G/cm @ 60 A
Range ≈ 1 mm
B0 = 7.0 / 18.8 T
![Page 8: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/8.jpg)
SNR versus Ø and B0
47
0Ø
1BSNR ∝ ~ skin depth regime
Ø
1/Ø
Peck TL, J Magn Reson B 108, 114 (1995)
![Page 9: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/9.jpg)
MRI with 3.0 µm isotropic resolution
glass fibres Ø ≈ 15 µm
in doped water measurement time 58 h
M. Weiger, Concepts Magn Reson B 33, 84 (2008)
![Page 10: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/10.jpg)
Foe: Conclusion
• CTI: resolution loss due to diffusion suppressed without SNR loss
• Dedicated hardware: resolution of 3 µm within 58 h can be achieved
• Some improvements possible by further optimisation(B0, RF coil)
• But: no considerable improvements are expected on this conventional path
• Hence: become friends with diffusion
![Page 11: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/11.jpg)
Friend: DESIRE Diffusion Enhancement of SIgnal and REsolution
object
( ) ( )rSSrI satref −∝
refS
satS
real-space, non-Fourier approach
H.D. Morris, SMR 1994, p. 376; C. H. Pennington, Concepts Magn Reson A 19, 71 (2003); L. Ciobanu, J Magn Reson 170, 252 (2004)
![Page 12: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/12.jpg)
1D Acquisition Scheme
Saturation Acquisition
RF
Gslice
Gspoil
…
…
…
1 – 5 s
![Page 13: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/13.jpg)
Upper Limit of SNR Gain
∆∝==1
NN
N
SNR
SNR
Fourier
DESIRE
V = object volume
Δ = voxel volume
assume complete saturation
Example: N = 643, SNR gain = 83, time saving = 86
# acquisition steps
N = V / ∆ = # voxels
constant volume
![Page 14: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/14.jpg)
Experimental 1D Results
z [µm]
experimental
simulated
Simulations:
Bloch-Torrey
Mz
M. Weiger, J Magn Reson 190, 95 (2008)
![Page 15: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/15.jpg)
Restricted Diffusion
Signal depends on D and compartment size
Signal peak at barrier position
1D DESIRE image
![Page 16: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/16.jpg)
Friend: Discussion
• DESIRE principle promises largely increased SNR
• Contrast is strongly diffusion-weighted
• Contains a lot of unique information
• Interpretation is not trivial
• Various experimental problems
• 3D saturation pulse
• Signal dynamics
• Repetition time
• Path is demanding but probably worth to go
![Page 17: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/17.jpg)
Acknowledgements
• Michael Fey principle investigator
• Daniel Schmidig RF coils
• Charles Massin RF coils
• Franck Vincent RF coils
• Schimun Denoth gradient coil
• Michael Schenkel digital receiver
• Yi Zeng intern DESIRE
![Page 18: Molecular diffusion in micro-MRI: friend or foe?iramis.cea.fr/meetings/nMRI/talks/Weiger.pdfAll 3 dimensions According to T 2 * CTI with large G: •No resolution loss •No SNR loss](https://reader033.vdocument.in/reader033/viewer/2022060416/5f143b1ab2479507162bdbef/html5/thumbnails/18.jpg)
18
www.bruker-biospin.com