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Next Generation Sequencing - Visualization - Arif Hossain Kyung Min Su

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Next Generation Sequencing - Visualization -. Arif Hossain Kyung Min Su. Content. Visualization Issues NGSView Tablet. Visualization Issues. Huge Data Various Format Rendering and Navigation Extensibility. NGSView. Berkeley DB engine Front end converter XML format - PowerPoint PPT Presentation

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Page 1: Next Generation Sequencing - Visualization -

Next Generation Sequencing - Visualization -

Arif Hossain

Kyung Min Su

Page 2: Next Generation Sequencing - Visualization -

Content

Visualization Issues

NGSView

Tablet

Page 3: Next Generation Sequencing - Visualization -

Visualization Issues

Huge Data

Various Format

Rendering and Navigation

Extensibility

Page 4: Next Generation Sequencing - Visualization -

NGSView

Berkeley DB engine

Front end converter XML format

Open and Documented API http://ngsview.sourceforge.net

Page 5: Next Generation Sequencing - Visualization -

NGSView

Page 6: Next Generation Sequencing - Visualization -

NGSView

Page 7: Next Generation Sequencing - Visualization -

NGSView

Page 8: Next Generation Sequencing - Visualization -

Tablet High-performance visualization and data navigation. Display of reads in both packed and stacked formats. Paired end visualization support. File format support for ACE, AFG, MAQ, SOAP2, SAM

and BAM. Search and locate reads by name across entire data

sets. Support for Windows, Apple Mac OS X, Linux and

Solaris, in 32 and 64-bit.

Page 9: Next Generation Sequencing - Visualization -

Tablet

Page 10: Next Generation Sequencing - Visualization -

Tablet

Page 11: Next Generation Sequencing - Visualization -

Tablet

Page 12: Next Generation Sequencing - Visualization -

Question?

NGSView http://ngsview.sourceforge.net

Tablet http://bioinf.scri.ac.uk/tablet


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