overview and course content
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Overview and Course Content. An Introduction to MRI Physics and Analysis Michael Jay Schillaci, PhD Monday, January 28 th , 2008. Course Content. We will focus on the Physics of fMRI. Applications in Social Psychology. Course Textbooks. Course Content. MRI History. - PowerPoint PPT PresentationTRANSCRIPT
Overview and Course Content
An Introduction to MRI Physics and Analysis
Michael Jay Schillaci, PhDMonday, January 28th, 2008
Course Content
Course Textbooks
We will focus on the Physics of fMRI
Applications in Social Psychology
Course ContentDay : Date Title – Topics Assignment
1 : January 28th Course Overview – Scope of course, Safety and Ethics Ch 1-2
2 : February 4th MRI Basics – MRI Physics Ch 3; Lab 2
3 : February 11th Image Formation Ch 4; Lab 4
4 : February 18th Contrast Mechanisms Ch 5; Lab 5
5 : February 25th Origin of the BOLD Signal Ch 6-9; Lab 7
6 : March 3rd Experimental Design Ch 11
: March 10th No Class Spring Break –
7 : March 17th Student Presentations Paper 1 Due
8 : March 24th Standard Statistical Techniques Ch 10,12; Lab 8
9 : March 31st Advanced Statistical Methods Lab 9, 10
10 : April 7th Standard MRI Analysis – Using FSL to Analyze fMRI Data Lab 11,12
12 : April 14th Advanced MRI Analysis – Using Matlab and SPM Lab 13
13 : April 21st Meta Analysis of fMRI Data Handout
14 : April 28th Student Presentations - Last Day of Classes Paper 2 Due
15 : May 1 Final Examination Period Final Project Due
MRI History
Scope of fMRI Experiments
fMRI is a Measurement Technique…
BRAIBRAINN
BEHAVIBEHAVIOROR
Measurement TechniquesfMRI, PET, EEG
Manipulation Techniques
Lesions, TMS, Stimulation
Timeline of MR Imaging
1920 1930 1940 1950 1960 1970 1980 1990 2000
1924 - Pauli suggests that nuclear particles
may have angular momentum (spin).
1937 – Rabi measures magnetic moment of
nucleus. Coins “magnetic resonance”.
1944 – Rabi wins Nobel prize in
Physics.
1946 – Purcell shows that matter absorbs energy at a resonant
frequency.
1946 – Bloch demonstrates that nuclear precession can be
measured in detector coils.
1952 – Purcell and Bloch share Nobel prize in Physics.
1972 – Damadian patents idea for large
NMR scanner to detect malignant
tissue.
1959 – Singer measures blood flow
using NMR (in mice).
1973 – Lauterbur publishes method for
generating images using NMR gradients.
1973 – Mansfield independently
publishes gradient approach to MR.
1975 – Ernst develops 2D-Fourier transform for MR.
NMR becomes MRI
MRI scanners become clinically
prevalent.
1990 – Ogawa and colleagues create functional images using endogenous, blood-oxygenation
contrast.
1985 – Insurance reimbursements for MRI exams begin.
M R I f
Early Human MR Images (Damadian)
Mink5 Image – Damadian (1977)
Blood-Oxygenation-Level
Dependent contrast
Key Concepts
Contrast Spatial Resolution Temporal Resolution Functional Resolution
Spatial Resolution: Examples
~8mm~8mm22 ~4mm~4mm22 ~2mm~2mm22
~1.5mm~1.5mm22 ~1mm~1mm22
Contrast: Functional
Contrast-to-noise is critical for fMRI: How effectively can we decide whether a given brain region has property X or property
Y?
Spatial Resolution: Voxels
Voxel: A small rectangular prism that is the basic sampling unit of fMRI. Typical anatomical voxel: (1.5mm)3. Typical functional voxel: (4mm)3.
Temporal Resolution
Determining factors Sampling rate, usually repetition time (TR) Dependent variable, usually BOLD response
BOLD response is sluggish, taking 2-3 seconds to rise above baseline and 4-6 seconds to peak
Experimental design
Most FMRI studies have temporal resolution on the order of a few seconds With specialized designs and data acquisition, this can be improved
to ~100ms
Students: Please sit with your project group in the first set of
rows.
Auditors: Please sit in the back.
FMRI : Ethics
Topics in Ethics
Safety issuesTesting of subject groups (IRB)
Privacy: HIPAA Incidental findings
PUBLIC LAW 104-191
AUG. 21, 1996
HEALTH INSURANCE PORTABILITY AND ACCOUNTABILITY ACT OF 1996
Public Law 104-191104th Congress
An Act
To amend the Internal Revenue Code of 1986 to improve portability and continuity of health insurance coverage in the group and individual markets, to combat waste, fraud, and abuse in health insurance and health care delivery, to
promote the use of medical savings accounts, to improve access to long-term care services and coverage, to simplify the administration of health insurance,
and for other purposes.
Be it enacted by the Senate and House of Representatives of the United States of America in Congress assembled,
What is Private Health Information?(for a research study) Name of participant Insurance, medical records Medical history, current conditions Group assignments (e.g., Alzheimer’s) Brain data?