ruwaimana monika - vliz · monika ruwaimana tropimundo - erasmus mundus masters course in tropical...

1
X. granatum “The cannoball” B. hainesii “crocodile eyes” Nypa tasty fruits baskets made from Nypa dwarf C. tagal flower Flowers of Avicennia marina R. apiculata fruit 2.a. 2.b. 3.a. 3.b. 3.c. 3.d. 1,2,3 3 3 4 2 1,2 RuwaimanaMonika ,AidyMohdMuslim ,BeharaSatyanarayana ,DriesRaymaekers ,NicoKoedam ,FaridDahdouh-Guebas REFERENCES [1] Green, E. P., Mumby, P. J., Edwards, A. J. & Clark Hand, C. D. Remote sensing book for tropical coastal management. (UNESCO, 2000). [2] Tomlinson, P. B. The botany of mangroves. (Cambridge University Press, 1994). [3] Giri, C., Ochieng, E., Tieszen, L. L., Zhu, Z., Singh, A., Loveland, T., Masek, J. & Duke, N. Status and distribution of mangrove forests of the world using earth observation satellite data. Glob. Ecol. Biogeogr. 20, 154–159 (2011). [4] Neukermans, G., Dahdouh-Guebas, F., Kairo, J. G. & Koedam, N. Mangrove species and stand mapping in Gazi Bay (Kenya) using Quickbird satellite imagery. J. Spat. Sci. 53, 75–86 (2008). [5] Salamí, E., Barrado, C. & Pastor, E. UAV flight experiments on the remote sensing of vegetation areas. Remote Sens. 6, 11051–11081 (2014). [6] Kaneko, K., Nohara, S., Kaneko, K. & Nohara, S. Review of Effective Vegetation Mapping Using the UAV (Unmanned Aerial Vehicle) Method. J. Geogr. Inf. Syst. 6, 733–742 (2014). [7] Strecha, C., Fletcher, A., Lechner, A., Erskine, P. & Fua, P. Developing Species Specific Vegetation Maps Using Multi-Spectral Hyperspatial Imagery From Unmanned Aerial Vehicles. ISPRS Ann. Photogramm. Remote Sens. Spat. Inf. Sci. I-3, 311–316 (2012). [8] Díaz-Varela, R., de la Rosa, R., León, L. & Zarco-Tejada, P. High-Resolution Airborne UAV Imagery to Assess Olive Tree Crown Parameters Using 3D Photo Reconstruction: Application in Breeding Trials. Remote Sens. 7, 4213–4232 (2015). [9] Nakisah, M. A. & Fauziah, A. H. Setiu Wetlands: Tranquility amidst plenty. (Kolej Universiti Sains dan Teknologi Malaysia - KUSTEM, 2003). [10] Azmi, M. Valuing The Potential Economic Value of Mangroves Resources in Setiu Wetlands, Terengganu, Malaysia: A Preliminary Findings. Int. J. Educ. Res. 2, 487–504 (2014). [11] Bernama. Terengganu to propose gazetting of Setiu Wetlands as state park. The Star Online (2013). at <http://www.thestar.com.my/News/Nation/2013/06/11/Terengganu-to-propose-gazetting-of-Setiu-Wetlands-as-state-park/>. Accessed on 25 April 2015. [12] Goessens, A., Satyanarayana, B., Van der Stocken, T., Quispe Zuniga, M., Mohd-Lokman, H., Sulong, I., Dahdouh-Guebas, F. Is matang mangrove forest in malaysia sustainably rejuvenating after more than a century of conservation and harvesting management? PLoS One 9, 8, e105069,1–14 (2014). [13] Brokaw, N. & Thompson, J. The H for DBH. For. Ecol. Manage. 129, 89–91 (2002). [14] Dahdouh-Guebas, F. & Koedam, N. Empirical estimate of the reliability of the use of the Point-Centred Quarter Method ( PCQM ): Solutions to ambiguous field situations and description of the PCQM + protocol. For. Ecol. Manage. 228, 1–18 (2006). [15] Ellison, J. & Cook, J. Climate Change Vulnerability Assessment and Adaptation Planning for Mangrove Systems. (World Wildlife Fund - WWF, 2012). [16] Jachowski, N.R.A.,Quak, M.S.Y., Friess, D.A., Duangnamon, D., Webb, E.L. & Ziegler, A.D. Mangrove biomass estimation in Southwest Thailand using machine learning. Appl. Geogr. 45, 311–321 (2013). [17] Clarke, K. & Warwick, R. The taxonomic distinctness measure of biodiversity: Weighting of step lengths between hierarchical levels. Mar. Ecol. Prog. Ser. 184, 21–29 (1999). [18] Joshi, H. G. & Ghose, M. Community structure, species diversity , and aboveground biomass of the Sundarbans mangrove swamps. Trop. Ecol. 55, 283–303 (2014). CONTACTINFO MonikaRuwaimana TROPIMUNDO -ErasmusMundusMastersCourse inTropicalBiodiversityandEcosystems Homeaddress -Jl.28Oktober,GangBimasaktiIINo.29, Pontianak,Indonesia Currentaddress -ChausséedeBoondael530,Ixelles,Brussels ☎+32483262669[email protected] AFFILIATIONS 1SystemsEcologyandResourceManagement,UniversitélibredeBruxelles-ULB,Avenue F.D.Roosevelt50,CPI264-1,B-1050Brussels,Belgium 2BiodiversityandEcology,VrijeUniversiteitBrussel-VUB,Pleinlaan2,B-1050Brussels, Belgium 3InstituteofOceanographyandEnvironment,UniversitiMalaysiaTerengganu-UMT, 21030KualaTerengganu,Malaysia 4VlaamseInstellingvoorTechnologischOnderzoek)-VITO,Boeretang200,B-2400Mol, Belgium ACKNOWLEDGEMENTS Wewouldliketothank: Ø TROPIMUNDOandErasmusMundusScholarship Ø Syafiqandcrewsforthehelpsonthefieldwork Ø INOScrew-Zulkamal,Kamal,Nasir,Shia Ø Setiufishermen-CikAzmi,Yoi,SidhiPenyu 3. 1. 2. E.PRELIMINARYRESULTS 4. Image 5. Resolution comparison. From left to right: Pleaides TCC; Camera RGB; Pleiades FCC; Camera IR. 4.a. 4.b 4.c. Image 4.a. Nypa stands in front of Rhizophora on one of the islets; 4.b. Stands of dwarf C. tagal; 4.c. Dalbergia candenatensis (Dennst.) Prain, one of under canopy species. Image 3. Drone Photographs area; 3.a. & 3.c. RGB Camera sample; 3.b. & 3.d. IR Camera Sample 3.a. linked with image below 3.b. linked with image below 3.c. linked with image below 3.d. linked with image below Image 2. Pleaides Image 1b in 2014. 2.a. Zoom of TCC (RGB) ; 2b. Zoom of FCC (NIR,R,G). 2.a. linked with image below 2.b. linked with image below D.MATERIALSANDMETHODS 1.SATELLITEIMAGERY Specificaon Ø Type : Pleiades 1b Ø Year : 2013 & 2014 Ø Resoluon : 0.5m Ø Bands : RGB & NIR Processing Ø True Color Composite (TCC) Ø False Color Composite (FCC) Classificaon (ongoing) Mapping (ongoing) 2.AIR-BORNEPHOTOGRAPHY Aircra - Quadcopter DJI Phantom 2 + DJI 2.4G Datalink + Zenmuse Gymbal + Flytrex Core 2 Ø Flight control - Autopilot by DJI 2.4G Datalink & DJI Ground Staon Vers.04 from PC Ø Flight track - Altude 100 m, 19 transects, speed 4 m/s, covering ± 4ha each. Ø Camera - Regular SJ4000 & IR SJ4000 modified by IRPro. 12MP, wide angle, focal length 24mm and CMOS sensor 22x36mm. Stabilized by Zenmuse gimbal. Time lapse of 2 second. Geotagging Images Ø Flytrex Core 2 - generate flight log Ø Flytrex website - converted log to .txt csv files Ø Microso Excel® - synchronize me with Seu local me (UTC+8), © Ø Gpsvisualizer - convert to .gpx © Ø Geoseer - synchronize and tag images with .gpx Ø Add images Ø Align image low-seng Ø Generate point cloud low-seng Ø Generate mesh low-seng Ø Texture low-seng Ø Add GCPs and adjusted by © Google Earth Pro Ø Reply the step Align Image to Texture with high-seng Ø Export as TIFF + world file © Mosaic Images - Agiso Photoscan Classificaon (ongoing) Mapping (ongoing) 3.GROUNDTRUTHING [12,15–18] Analysis (ongoing) -1 Ø density (nos ha ) 2 -1 Ø basal area (m ha ) Ø relave density (%) Ø relave dominance (%) Ø relave frequency (%) Ø diversity indexes & taxonomy disnctness Ø ordinaon stascs Mapping (ongoing) 4.COMPARISON&COMPLETEMAP Table 1. Methods Comparison (ongoing) Satellite Drone Ground sampling Data acquision +/- ? ? ? Data processing +/- ? ? ? Analysis +/- ? ? ? Accuracy ? ? ? Resoluon ? ? ? Costs & benefits ? ? ? Comprehensive Map of Seu Mangrove (ongoing) Plots Points Number 100 155 Size 2 5×5 m - Locaon chosen randomly over the mangrove area not always over mangrove Equipment Garmin GPS, tape marker, diameter tape, compass, Toolcra LDM 50T, Haga Almeter Garmin GPS Acvies Measuring, idenficaon and counng: adult trees (height ≥1.3 m and D ≥2.5 cm), D or measure 30 130 130 [12–14] cm above the highest prop-root ; saplings ( ≤3 leaf [12] pairs, propaguls were nearly absent) & young trees . Visual observaon of surrounding vegetaon A.INTRODUCTION Ø Mangrove areas are usually difficult to penetrate, [1,2] resulng in logiscally demanding field surveys . Ø Remote sensing provides more effecve and economical ways to survey and to map mangroves. However, high spaal resoluon images are [1,3–5] relavely costly . Ø Air-borne photography can easily be acquired through space and over me and has been proven to be advantageous for monitoring mangrove swamps [5–7] and riparian systems . Ø Availability of drones or UAVs (Unmanned Aerial Vehicle) is decreasing the producon cost of aerial photographs, offering a great potenal for remote [5,6] sensing research . Ø Modifying the regular RGB camera by changing the IR filter to Blue is potenally useful for vegetaon [5,7,8] mapping, and this needs to be tested . B.OBJECTIVES Ø To assess the advantages, limitaons and authencity of air-borne drone technology for mangrove species mapping compared to space- borne and ground-truth inventory. Ø To create a high resoluon and comprehensive species-level mangrove vegetaon map of Seu Wetland as a baseline for future researchs. C.STUDYAREA Ø Seu Wetland is an ecosystem that features sea, beach, mudflat, lagoon, estuary, river, islands, coastal [9] forest and mangroves . Ø This wetland is supporng local livelihoods, mainly in [10] aquaculture and fisheries , as well as a source of wild honey and Nypa palm for craing (pers. obs.) Ø Currently, the Terengganu Government is in the [11] process of making this area a State Park Reserve . Image 1. Data collection in Setiu Wetland (Malaysia). Image coverage is delineated by the polygons. Tree measurement plots are marked with triangles, and visual description points are marked with dots (see Materials and Methods point 3) b c d a SatellitevsDrone:MappingofMangroves inSetiuWetland,Malaysia b c d a b c d a b c d a

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Page 1: Ruwaimana Monika - VLIZ · Monika Ruwaimana TROPIMUNDO - Erasmus Mundus Masters Course in Tropical Biodiversity and Ecosystems ... 1 Systems Ecology and Resource Management, Université

X. granatum“The cannoball”

B. hainesii“crocodile eyes”

Nypa tasty fruits

baskets made from Nypa

dwarf C. tagal flower

Flowers of Avicennia marina

R. apiculata fruit

2.a.

2.b.

3.a. 3.b.

3.c. 3.d.

1,2,3 3 3 4 2 1,2Ruwaimana�Monika ,�Aidy�Mohd�Muslim ,�Behara�Satyanarayana ,�Dries�Raymaekers ,�Nico�Koedam ,�Farid�Dahdouh-Guebas

REFERENCES[1] Green, E. P., Mumby, P. J., Edwards, A. J. & Clark Hand, C. D. Remote sensing book for tropical coastal management. (UNESCO, 2000).[2] Tomlinson, P. B. The botany of mangroves. (Cambridge University Press, 1994).[3] Giri, C., Ochieng, E., Tieszen, L. L., Zhu, Z., Singh, A., Loveland, T., Masek, J. & Duke, N. Status and distribution of mangrove forests of

the world using earth observation satellite data. Glob. Ecol. Biogeogr. 20, 154–159 (2011).[4] Neukermans, G., Dahdouh-Guebas, F., Kairo, J. G. & Koedam, N. Mangrove species and stand mapping in Gazi Bay (Kenya) using

Quickbird satellite imagery. J. Spat. Sci. 53, 75–86 (2008).[5] Salamí, E., Barrado, C. & Pastor, E. UAV flight experiments on the remote sensing of vegetation areas. Remote Sens. 6, 11051–11081

(2014).

[6] Kaneko, K., Nohara, S., Kaneko, K. & Nohara, S. Review of Effective Vegetation Mapping Using the UAV (Unmanned Aerial Vehicle) Method. J. Geogr. Inf. Syst. 6, 733–742 (2014).

[7] Strecha, C., Fletcher, A., Lechner, A., Erskine, P. & Fua, P. Developing Species Specific Vegetation Maps Using Multi-Spectral Hyperspatial Imagery From Unmanned Aerial Vehicles. ISPRS Ann. Photogramm. Remote Sens. Spat. Inf. Sci. I-3, 311–316 (2012).

[8] Díaz-Varela, R., de la Rosa, R., León, L. & Zarco-Tejada, P. High-Resolution Airborne UAV Imagery to Assess Olive Tree Crown Parameters Using 3D Photo Reconstruction: Application in Breeding Trials. Remote Sens. 7, 4213–4232 (2015).

[9] Nakisah, M. A. & Fauziah, A. H. Setiu Wetlands: Tranquility amidst plenty. (Kolej Universiti Sains dan Teknologi Malaysia - KUSTEM, 2003).

[10] Azmi, M. Valuing The Potential Economic Value of Mangroves Resources in Setiu Wetlands, Terengganu, Malaysia: A Preliminary Findings. Int. J. Educ. Res. 2, 487–504 (2014).

[11] Bernama. Terengganu to propose gazetting of Setiu Wetlands as state park. The Star Online (2013). at <http://www.thestar.com.my/News/Nation/2013/06/11/Terengganu-to-propose-gazetting-of-Setiu-Wetlands-as-state-park/>. Accessed on 25 April 2015.

[12] Goessens, A., Satyanarayana, B., Van der Stocken, T., Quispe Zuniga, M., Mohd-Lokman, H., Sulong, I., Dahdouh-Guebas, F. Is matang mangrove forest in malaysia sustainably rejuvenating after more than a century of conservation and harvesting management? PLoS One 9, 8, e105069,1–14 (2014).

[13] Brokaw, N. & Thompson, J. The H for DBH. For. Ecol. Manage. 129, 89–91 (2002).[14] Dahdouh-Guebas, F. & Koedam, N. Empirical estimate of the reliability of the use of the Point-Centred Quarter Method ( PCQM ):

Solutions to ambiguous field situations and description of the PCQM + protocol. For. Ecol. Manage. 228, 1–18 (2006).[15] Ellison, J. & Cook, J. Climate Change Vulnerability Assessment and Adaptation Planning for Mangrove Systems. (World Wildlife

Fund - WWF, 2012).[16] Jachowski, N.R.A.,Quak, M.S.Y., Friess, D.A., Duangnamon, D., Webb, E.L. & Ziegler, A.D. Mangrove biomass estimation in

Southwest Thailand using machine learning. Appl. Geogr. 45, 311–321 (2013).[17] Clarke, K. & Warwick, R. The taxonomic distinctness measure of biodiversity�: Weighting of step lengths between hierarchical

levels. Mar. Ecol. Prog. Ser. 184, 21–29 (1999).[18] Joshi, H. G. & Ghose, M. Community structure, species diversity , and aboveground biomass of the Sundarbans mangrove

swamps. Trop. Ecol. 55, 283–303 (2014).

��

CONTACT�INFO�Monika�Ruwaimana��TROPIMUNDO� -�Erasmus�Mundus�Masters�Course�� � � ���� ���in�Tropical�Biodiversity�and�Ecosystems�Home�address�� -�Jl.�28�Oktober,�Gang�Bimasakti�II�No.�29,�� � � � � ��Pontianak,�Indonesia�Current�address� -�Chaussée�de�Boondael�530,�Ixelles,�Brussels�☎�+32483262669��✉[email protected]

AFFILIATIONS1��Systems�Ecology�and�Resource�Management,�Université�libre�de�Bruxelles�-�ULB,�Avenue�

F.D.�Roosevelt�50,�CPI�264-1,�B-1050�Brussels,�Belgium2��Biodiversity�and�Ecology,�Vrije�Universiteit�Brussel�-VUB�,�Pleinlaan�2,�B-1050�Brussels,�

Belgium3��Institute�of�Oceanography�and�Environment,�Universiti�Malaysia�Terengganu�-�UMT,�

21030�Kuala�Terengganu,�Malaysia4��Vlaamse�Instelling�voor�Technologisch�Onderzoek)�-�VITO,�Boeretang�200,�B-2400�Mol,�

Belgium

ACKNOWLEDGEMENTS�We�would�like�to�thank:Ø TROPIMUNDO�and�Erasmus�Mundus�ScholarshipØ Syafiq�and�crews�for�the�helps�on�the�fieldwork�Ø INOS�crew�-�Zulkamal,�Kamal,�Nasir,�Shia�Ø Setiu�fishermen�-�Cik�Azmi,�Yoi,�Sidhi�Penyu

3.

1.

2.

E.�PRELIMINARY�RESULTS

4.

Image 5. Resolution comparison. From left to right: Pleaides TCC; Camera RGB; Pleiades FCC; Camera IR.

4.a.

4.b

4.c.

Image 4.a. Nypa stands in front of Rhizophora on one of the islets; 4.b.

Stands of dwarf C. tagal; 4.c. Dalbergia candenatensis (Dennst.) Prain, one of

under canopy species.

Image 3. Drone Photographs area; 3.a. & 3.c. RGB Camera sample; 3.b. & 3.d. IR Camera Sample

3.a. linked with image below 3.b. linked with image below 3.c. linked with image below 3.d. linked with image below

Image 2. Pleaides Image 1b in 2014. 2.a. Zoom of TCC (RGB) ; 2b. Zoom of FCC (NIR,R,G).

2.a. linked with image below 2.b. linked with image below

D.��MATERIALS�AND�METHODS1.�SATELLITE�IMAGERYSpecifica�on Ø Type : Pleiades 1bØ Year : 2013 & 2014

Ø Resolu�on : 0.5m Ø Bands : RGB & NIR

ProcessingØ True Color Composite (TCC) Ø False Color Composite (FCC)

Classifica�on (ongoing)

Mapping (ongoing)

2.�AIR-BORNE�PHOTOGRAPHYAircra� - Quadcopter DJI Phantom 2 + DJI 2.4G Datalink +

Zenmuse Gymbal + Flytrex Core 2Ø Flight control - Autopilot by DJI 2.4G Datalink & DJI Ground Sta�on

Vers.04 from PC Ø Flight track - Al�tude 100 m, 19 transects, speed 4 m/s, covering ±

4ha each.Ø Camera - Regular SJ4000 & IR SJ4000 modified by IRPro. 12MP, wide

angle, focal length 24mm and CMOS sensor 22x36mm. Stabilized by Zenmuse gimbal. Time lapse of 2 second.

Geotagging ImagesØ Flytrex Core 2 - generate flight logØ Flytrex website - converted log to .txt csv files Ø Microso� Excel® - synchronize �me with Se�u local �me (UTC+8),

©Ø Gpsvisualizer - convert to .gpx

©Ø Geose�er - synchronize and tag images with .gpx

Ø Add imagesØ Align image low-se�ngØ Generate point cloud low-se�ngØ Generate mesh low-se�ngØ Texture low-se�ng

Ø Add GCPs and adjusted by ©

Google Earth ProØ Reply the step Align Image to

Texture with high-se�ngØ Export as TIFF + world file

©Mosaic Images - Agiso� Photoscan

Classifica�on (ongoing)

Mapping (ongoing)

3.�GROUND�TRUTHING

[12,15–18]Analysis (ongoing)-1

Ø density (nos ha ) 2 -1

Ø basal area (m ha )Ø rela�ve density (%)Ø rela�ve dominance (%)

Ø rela�ve frequency (%)Ø diversity indexes & taxonomy

dis�nctness Ø ordina�on sta�s�cs

Mapping (ongoing)

4.�COMPARISON�&�COMPLETE�MAPTable 1. Methods Comparison (ongoing)

Satellite Drone Ground sampling

Data acquisi�on +/- ? ? ?

Data processing +/- ? ? ?

Analysis +/- ? ? ?

Accuracy ? ? ?

Resolu�on ? ? ?

Costs & benefits ? ? ?

Comprehensive Map of Se�u Mangrove (ongoing)

Plots Points

Number 100 155

Size 25×5 m -

Loca�on chosen randomly over the mangrove area not always over mangrove

Equipment Garmin GPS, tape marker, diameter tape, compass, Toolcra� LDM 50T, Haga Al�meter

Garmin GPS

Ac�vi�es

Measuring, iden�fica�on and coun�ng: adult trees (height ≥1.3 m and D ≥2.5 cm), D or measure 30 130 130

[12–14]cm above the highest prop-root ; saplings ( ≤3 leaf [12]pairs, propaguls were nearly absent) & young trees .

Visual observa�on of surrounding

vegeta�on

A.�INTRODUCTIONØ Mangrove areas are usually difficult to penetrate,

[1,2]resul�ng in logis�cally demanding field surveys .

Ø Remote sensing provides more effec�ve and economical ways to survey and to map mangroves. However, high spa�al resolu�on images are

[1,3–5]rela�vely costly .

Ø Air-borne photography can easily be acquired through space and over �me and has been proven to be advantageous for monitoring mangrove swamps

[5–7]and riparian systems .

Ø Availability of drones or UAVs (Unmanned Aerial Vehicle) is decreasing the produc�on cost of aerial photographs, offering a great poten�al for remote

[5,6]sensing research .

Ø Modifying the regular RGB camera by changing the IR filter to Blue is poten�ally useful for vegeta�on

[5,7,8]mapping, and this needs to be tested .

B.�OBJECTIVES�Ø To assess the advantages, limita�ons and

authen�city of air-borne drone technology for mangrove species mapping compared to space-borne and ground-truth inventory.

Ø To create a high resolu�on and comprehensive species-level mangrove vegeta�on map of Se�u Wetland as a baseline for future researchs.

C.�STUDY�AREA�

Ø Se�u Wetland is an ecosystem that features sea, beach, mudflat, lagoon, estuary, river, islands, coastal

[9]forest and mangroves .

Ø This wetland is suppor�ng local livelihoods, mainly in [10]aquaculture and fisheries , as well as a source of

wild honey and Nypa palm for cra�ing (pers. obs.)

Ø Currently, the Terengganu Government is in the [11]process of making this area a State Park Reserve .

Image 1. Data collection in Setiu Wetland (Malaysia). Image coverage is delineated by the polygons. Tree measurement plots are marked with

triangles, and visual description points are marked with dots (see Materials and Methods point 3)

b c da

Satellite�vs�Drone:�Mapping�of�Mangroves�in�Setiu�Wetland,�Malaysia

b c da

b c da

b c da

Monika
Sticky Note
This part of poster is not displayed as it printed, but will be assemblage into the poster above. Images 3a-d are pull up in E. Preliminary Result section 2
Monika
Sticky Note
This part of poster is not displayed as it printed, but will be assemblage into the poster above. Images 2.a. and 2.b are drop down in E. Preliminary Result section 1
Monika
Sticky Note
This part of poster is not displayed as it printed, but will be assemblage into the poster above. The mangrove trees is attached in front of the tree line.
Monika
Sticky Note
This part of poster is not displayed as it printed, but will be assemblage into the poster above. Images a-d are displayed as cards for comparison in E. Preliminary Result section 4