sgn new user-friendly homepage design. easy access to the major tools and datasets

18
SGN new user-friendly homepage design. Easy access to the major tools and datasets

Upload: loan

Post on 01-Feb-2016

21 views

Category:

Documents


0 download

DESCRIPTION

SGN new user-friendly homepage design. Easy access to the major tools and datasets. Breeders Toolbox page redesigned with quick links to the major SGN Breeders tools. SGN 'trait search' page. Search traits associated with QTLs. Browse the list of traits. Type the trait name. - PowerPoint PPT Presentation

TRANSCRIPT

Page 1: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN new user-friendly homepage design. Easy access to the major tools and datasets

Page 2: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Breeders Toolbox page redesigned with quick links to the major SGN Breeders tools

Page 3: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN 'trait search' page. Search traits associated with QTLs

Type the trait name

Browse the list of traits

Browse by available QTL population

Page 4: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 5: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 6: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 7: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 8: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 9: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 10: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

SGN help page for 'Trait Search'

Page 11: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

QTL analysis

A QTL tool, solQTL, has been implemented, allowing users to upload data and analyze QTLs on-line (http://solgenomics.net/phenome/qtl_form.pl

Page 12: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

QTL analysis

Private means only the person who loaded the data has access.

Page 13: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotypes101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

Page 14: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotypes101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

Page 15: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotypes101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

Page 16: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotypes101 potato accessions from SolCAP were loaded, with photos and phenotype measurements

Page 17: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait

Page 18: SGN new user-friendly homepage design.  Easy access to the major tools and datasets

Phenotype Ontology and traits Traits are were added in a controlled vocabulary format (ontology) whenever required for adding potato phenptyped trait

* More traits will be added as SGN continues to load SolCAP phenotyping experiments. Breeder-specific terms will be used as the trait name, and different descriptors will be mapped to the ontology using synonyms, allowing to query the database with any similar terms from different descriptor systems (e.g. 'shoot maturity' and 'vine maturity').