USING BIBTEX

Making references in LaTeX(fish.tex)\documentclass{article}\begin{document}\emph{My mother} is a \underline{fish} \cite{WF}.\begin{thebibliography}{99}\bibitem{WF}William Faulkner, \emph{As I Lay Dying}\end{thebibliography}\end{document}

Need to compile the document twiceBecause we are using symbolic references, e.g., \cite{WF}, a second pass is necessaryThe second pass will resolve references

Problem with this methodUser is burdened with deciding how to format article titles, journal names, proceeding referencesDifficult to reuse references in other documents

QUICK BIBTEX TUTORIAL

BibTex TutorialWhy do you want to learn BibTex?Nuts and Bolts of BibTexExamples

Why you want to learn BibTexComplements LaTeX documents by managing bibliography and referencesMinimizes the drudgery of formatting, numbering, and referencingDisadvantage:Steep Learning Curve

The BibTex ProcessCreate a BibTex file with Reference entriesGet a *.bst file (bibliographic style file)Compile or Build your LaTeX document to create an *.aux fileRun BibTeX on your LaTeX fileRun LaTeX twice on your updated fileView the dvi or pdf file

Types of Documents BibTex can handleARTICLEBOOKBOOKLETINBOOKINCOLLECTIONINPROCEEDINGSMANUAL

MISCPHDTHESISPROCEEDINGSTECHREPORTUNPUBLISHED

Each Document type can have the following entriesaddressauthorbooktitlechaptercrossrefeditioneditorhowpublishedinstitutionjournalkeylanguagemonthnotenumberorganizationpagespublisherschoolseriestitletype=Ph.D. dissertationvolumeyear

Sample BibTex Book Entry(mybib.bib)@BOOK{Press,author="W.H. Press",title="Numerical Recipes in C: The Art of Scientific Computing",publisher="Cambridge University Press",year=1992,}

Sample BibTex Technical Report Entry@TECHREPORT{Berk,author="Lex A. Berk and L.S. Bernstein and D.C. Robertson",title="MODTRAN: a moderate resolution model for LOWTRAN 7",number="GL-TR-89-0122",institution="Spectral Science",address = "Burlington, MA",year = 1989}

Sample BibTex Ph.D. Dissertation Entry@PHDTHESIS{Kuo,author="Jan-Tai Kuo",title="The Influence of Hydrodynamic Transport on Phytoplankton Dynamics in Homogeneous Lakes",school="Cornell University",address="Ithaca, NY",year=1981,}

Sample BibTex Masters Thesis Entry@MASTERSTHESIS{Knobelspiesse,author="Kirk D. Knobelspiesse",title="Atmospheric Compensation for SeaWIFS Images of Lake Superior Utilizing Spatial Information",school="Rochester Institute of Technology",addess="Rochester, NY",month=Sep,year=2000,}

Sample BibTex Article Entry@ARTICLE{Vodacek,author="Anthony Vodacek and F.E. Hoge and R.N. Swift and J.K. Yungel and E.T. Peltzer and N.V. Blough",title="The use of in situ and airborne fluorescence measurements to determine UV absorption coefficients and DOC concentrations in surface waters",journal="Limnology and Oceanography",volume=40,number=2,year=1995,pages="411--415",}

Sample BibTex Booklet Entry@BOOKLET{Sherwood,author="D.A. Sherwood",title="Phosphorus Loads Entering Long Pond, A Small Embayment of Lake Ontario near Rochester, New York",howpublished="USGS Fact Sheet 128-99",pages=4,month="November",year=1999,}

Sample BibTex Proceedings Entry@INPROCEEDINGS{Stoermer,author="E.F. Stoermer",title="Nearshore phytoplankton populations in the Grand Haven, Michigan vicinity during thermal bar conditions",booktitle="Proceedings of the 11th Conference on Great Lakes Research",pages="137--150",year=1968,}

Sample BibTex Manual Entry@MANUAL{RSI,author="RSI",title="ENVI User's Guide",publisher="Reasearch Systems Incorporated",organization="Research Systems Incorporated",howpublished="PDF File",address="Boulder, CO",month="September",year=2001,}

Different Formatting StylesTo invoke a particular style, go tohttp://www.ctan.orgDocument styles are defined in *.sty filesmla.stybmsplain.styBibliography styles are defined in *.bst filesmla.bstamsplain.bst

To invoke these styles in your documentCopy them to your current working directory with your LaTeX and BibTex documentEdit your LaTeX file to appropriately reference these style guides

Sample LaTeX document listing Bibliography in MLA Style (bib.tex)\documentclass{report}\usepackage{mla}\begin{document}

\bibliographystyle{mla}\bibliography{mybib}\nocite{*}

\end{document}

Commands to Build and View DocumentTo use xdvi viewer

% latex bib.tex% bibtex bib.aux% latex bib.tex% latex bib.tex% xdvi bib.dvi

Sample LaTeX document listing Bibliography in AMS Style (bib.tex)\documentclass{report}\begin{document}

\bibliographystyle{amsplain}\bibliography{mybib}\nocite{*}

\end{document}

To include only cited articles we remove the \nocite{*} command\documentclass{report}\begin{document}We want to get the documents \cite{RSI} and \cite{Kuo} for our collection\bibliographystyle{amsplain}\bibliography{mybib}

\end{document}

Cross-referencing in Proceedings@PROCEEDINGS{Narayanan,editor="Ram Mohan Narayanan and James E. Kalshoven, Jr.",title="Advances in Laser Remote Sensing for Terrestrial and Oceanographic Applications",booktitle="Proceeding of SPIE",publisher="SPIE",volume=3059,year=1997,}

Article in Proceedings@INPROCEEDINGS{Ulrich,author="B.L. Ulrich and P. Lacovara and S.E. Moran and M.J. DeWeert",title="Recent results in imaging lidar",crossref="Narayanan",pages="95--108",}

MISCELLANEOUS LATEX TOPICS

Comments in LaTeX%Ignores the rest of the line

To protect special charactersUse the \ charactere.g. My\_Cat.raw

To typeset a section as typed\begin{verbatim}

\end{verbatim}

Verbatim command OK for small sections that can be typed into documentWhat about including entire source code of programsUse verbatim package

Including Source code in LaTeX documents\documentclass{article}\usepackage{verbatim}\begin{document}

\begin{equation} \label{E:sum}s = \sum_{i=1}^{n}x_{i}\end{equation}

The code as implemented in idl in vectorized form looks like

\verbatiminput{sum.pro}

\end{document}

Including image graphics into you LaTeX documentNeed to convert your image graphics into EPS For images, use pnmtops, e.g.% pnmtops norotate nosetpage MyCat.pgm > MyCat.ps-norotate keeps from auto-rotating the image-nosetpage keeps from setting to a specific deviceNeed to include an extension package to LaTeX called graphics using command\usepackage{graphics}

Image Graphics Example(image.tex)\documentclass{article}\usepackage{graphics}\begin{document}\begin{figure} \includegraphics{MyCat.ps}\caption{This is My Cat} \label{F:MyCat}\end{figure}\end{document}

Flowchart FiguresCreate Flowchart in PowerPointExport as a bmp fileConvert from bmp to postscript% bmptoppm figure.bmp | pnmtops norotate nosetpage > figure.psOR User xfig because it will export to EPS Shareware utility called WMF2EPSWindows clipboard objects to EPS

Because current pdflatex cannot include Encapsulated Postscript Files (EPS)

Need to go from dvi to postscript to pdf using the following commands% dvips image.dvi% ps2pdf image.ps

Some degradation in quality is observed