CURRICULUM VITAE updated 10/10/17

Jed Alan Fuhrman

Address: Department of Biological Sciences University of Southern California Los Angeles, CA 90089-0371Birth: October 1956. U.S. Citizen.

Contact: (213) 740-5757 or -5759 FAX: 740-8123 email: fuhrman@usc.eduWebsites: http://dornsife.usc.edu/labs/fuhrmanlab, scholar.google.com/citations?user=VjvupJUAAAAJ&hl=en

EDUCATION

Ph.D., Oceanography, 1981. Scripps Institution of Oceanography, University of California, San DiegoS.B., Biology, 1977. Massachusetts Institute of Technology

PROFESSIONAL EXPERIENCE

Faculty positions:Assistant Professor of Oceanography, SUNY Stony Brook, 1981-1986 Associate Professor of Oceanography, State University of New York at Stony Brook, 1986-88 Associate Professor of Biological Sciences, University of Southern California, 1988 -1992Professor of Biological Sciences, University of Southern California, 1992-present Department Chair (Biological Sciences), 1994-1996 McCulloch-Crosby Chair of Marine Biology 1995 – presentSection Head, Marine Biology and Biological Oceanography 2009-12 Other: Research Collaborator, Brookhaven National Laboratory, 1985-1988Editorial Advisor of Marine Ecology - Progress Series, 1988-93, Senior Editorial Advisor (sub-editor) 1993-97; Contributing Editor, 1997-2003; Editorial Board 2003-2006Editorial Advisor of Marine Microbial Food Webs, 1992-1995 Editorial Board, Microbial Ecology 2006-2007Editorial Board, Applied and Environmental Microbiology, 1997 -2000Subject Editor (empowered to accept/reject manuscripts) of Aquatic Microbial Ecology, 1995 - presentEditorial Board, Environmental Microbiology 2003-presentEditorial Board, ISME Journal, 2006-presentEditorial Board, Microbiome (BioMed Central), 2012-

PROFESSIONAL SOCIETIESAmerican Society of Limnology and OceanographyAmerican Association for the Advancement of Science (ASLO representative to the Biological Sciences Section of AAAS 1984-93)American Society for MicrobiologySigma XiThe Oceanography Society (charter member)American Geophysical UnionInternational Society for Microbial Ecology (charter member)

HONORS, FELLOWSHIPS, SCHOLARSHIPS, VISITING POSITIONSPhi Beta Kappa (MIT chapter), 1977National Science Foundation Graduate Fellowship, 1977-80Riker Fellowship at Bermuda Biological Station, summer 1987 Visiting Professor, University of Copenhagen, spring 1988McCulloch-Crosby Chair of Marine Biology (at USC), 1995 - presentFellow of the American Association for the Advancement of Science, 1997 Visiting Distinguished Scientist, Texas A&M University, April 1997Steinbach Scholar, Woods Hole Oceanographic Institution, July 2000Highly Cited Researcher, Institute for Scientific Information, ISIHighlyCited.com, 2002-presentFellow of the American Academy of Microbiology, 2003G. Evelyn Hutchinson Medal (American Society of Limnology & Oceanography) 2006Albert S. Raubenheimer Outstanding Faculty Award (USC) 2006Eminent Scholar Series Lecturer, University of South Florida, 2009Van Neil Lecturer, Hopkins Marine Station, Stanford University, 2012Visiting Professor, University of Pierre and Marie Curie, Banyuls sur mer, France, 2012Visiting Professor, Institute for Marine Sciences, Barcelona, Spain, 2012Faculty of 1000 member 2012-Gordon and Betty Moore Foundation Marine Microbiology Initiative Investigator, 2013-Fellow, American Academy of Arts and Sciences, 2013Sustaining Fellow (Inaugural class), Assoc for the Sciences of Limnology and Oceanography 2015USC Associates Award for Creativity in Research and Scholarship 2016

RESEARCH INTERESTSAquatic microbial ecology and biological oceanography; functioning of microbial systems - particularly, roles of bacteria, archaea, and viruses in natural systems; microbial biodiversity and identification of nonculturable bacteria and archaea and their functions; microbial biogeography and its causal factors; interactions with dissolved and particulate organic matter; two-way interactions with other chemical and physical processes; rates of bactivory and viral infection; rates of nutrient regeneration; application of biochemical and molecular biological approaches to these problems; connections to global cycles; microbial association networks; human impacts on aquatic systems, pathogens and related health hazards. Rapid measurements of human pathogenic viruses and bacteria in environmental samples of water and air.

PUBLICATIONS (h-index = 85 by Google Scholar, 75 by Web of Science as of July 2017)

1. Fuhrman, J.A., S.W. Chisholm, and R.R.L. Guillard. 1978. Marine alga Platymonas sp. accumulates silicon without apparent requirement. Nature (London) 272: 244-246

2. Hollibaugh, J.T., J.A. Fuhrman, and F. Azam. 1980. Radioactively labeling of natural assemblages of bacterioplankton for use in trophic studies. Limnol. Oceanogr. 25: 172-181

3. Fuhrman, J.A., and F. Azam. 1980. Bacterioplankton secondary production estimates for coastal waters of British Columbia, Antarctica, and California. Appl. Envir. Microbiol. 39:1085-1095 (an ISI "Citation Classic")

4. Hollibaugh, J,T., A.B. Carruthers, J.A. Fuhrman, and F. Azam. 1980. Cycling of organic nitrogen in marine plankton communities studied in enclosed water columns. Mar. Biol. 59: 15-21

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5. Fuhrman, J.A., J.W. Ammerman, and F. Azam. 1980. Bacterioplankton in the coastal euphotic zone: distribution, activity, and possible relationships with phytoplankton. Mar. Biol. 60: 201-207

6. Hodson, R.E., F. Azam, A.F. Carlucci, J.A. Fuhrman, D.M. Karl, and O. Holm- Hansen. 1981. Microbial uptake of dissolved organic matter in McMurdo Sound, Antarctica. Mar. Biol. 61: 89-94

7. Fuhrman, J.A. 1981. Influence of method on the apparent size distribution of bacterioplankton cells: epifluorescence microscopy compared to scanning electron microscopy. Mar. Ecol. Prog. Ser. 5: 103-106

8. Eppley, R.W., S.G. Horrigan, J.A. Fuhrman, E.R. Brooks, C.C. Price, and K. Sellner. 1981. Origins of dissolved organic matter in Southern California coastal waters: experiments on the role of zooplankton. Mar. Ecol. Prog. Ser. 6: 149-159

9. Fuhrman, J.A., and F. Azam. 1982. Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: evaluation and field results. Mar. Biol. 66:109-120 (An "ISI Citation Classic")

10. Riemann, B., J.A. Fuhrman, and F. Azam. 1982. Bacterial secondary production in freshwater measured by the tritiated thymidine incorporation method. Microb. Ecol. 8:101-114

11. Fuhrman, J.A.,and F. Azam. 1983. Adaptations of bacteria to marine subsurface waters studied by temperature response. Mar. Ecol. Prog. Ser. 13:95-98

12. Azam, F., J.W. Ammerman, J.A. Fuhrman, and A. Hagstrom. 1984. Role of bacteria in polluted marine ecosystems. In H. H. White (ed.) Concepts in Marine Pollution Measurements. University of Maryland Sea Grant, College Park. pp 431-442

13. Ammerman, J.W., J.A. Fuhrman, A. Hagstrom, and F. Azam. 1984. Growth characteristics of marine bacteria grown in "seawater cultures" (unsupplemented particle-free seawater). Mar. Ecol. Prog. Ser. 18:31-39

14. Azam, F. and J.A. Fuhrman. 1984. Measurement of bacterioplankton growth in the sea and its regulation by environmental conditions. In: Heterotrophic activity in the sea. J. Hobbie and P.J.leB. Williams (eds). Plenum Press. pp. 179-196 15. Fuhrman, J.A. and G.B. McManus. 1984. Do bacteria-sized marine eukaryotes consume significant bacterial production? Science 224: 1257-1260

16. Riemann, B., P. Nielsen, M. Jeppesen, B. Marcussen and J.A. Fuhrman. 1984. Diel changes in bacterial biomass and growth rates in coastal environments, determined by means of thymidine incorporation into DNA, frequency of dividing cells (FDC), and microautoradiography. Mar. Ecol. Prog. Ser. 17: 227-235

17. Fuhrman, J.A and T. Bell. 1985. Biological considerations in the measurement of dissolved free amino acids in seawater and implications for chemical and microbiological studies. Mar. Ecol. Prog. Ser. 25: 13-21

18. Mitchell, J.G., A. Okubo, and J.A. Fuhrman. 1985. Microzones form the basis for a stratified microbial ecosystem. Nature (London) 316: 58-59

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19. Fuhrman, J.A., R.W. Eppley, A. Hagstrom, and F. Azam. 1985. Diel variations in bacterioplankton, phytoplankton, and related parameters in the Southern California Bight. Mar. Ecol. Prog. Ser. 27: 9-20

20. Legier-Visser, M., J. Mitchell, A. Okubo, and J.A. Fuhrman. 1986. Mechanoreception in calanoid copepods: a mechanism for prey detection. Mar. Biol. 90: 526-535

21. McManus, G.B. and J.A. Fuhrman. 1986. Photosynthetic pigments in the ciliate Laboea strobila from Long Island Sound, USA. J. Plankton Res. 8:317-327

22. McManus, G.B. and J.A. Fuhrman. 1986. Bactivory in seawater studied with the use of inert fluorescent particles. Limnol. Oceanogr. 31: 420-426

23. Riemann, B., N.O.G. Jorgensen, W. Lampert, and J.A. Fuhrman. 1986. Zooplankton-induced changes in dissolved free amino acids and in production rates of freshwater bacteria. Microb. Ecol. 12: 247-258

24. Fuhrman, J.A., H.W. Ducklow, D. Kirchman, J.P. Hudak, G.B. McManus, J. Kramer. 1986. Does adenine incorporation into nucleic acids measure total microbial production? Limnol. Oceanogr. 31: 627-636

25. Fuhrman, J.A., H.W. Ducklow, D.L. Kirchman, and G.B. McManus. 1986. Adenine and total microbial production: a reply. Limnol Oceanogr. 31: 1395-1400 26. Fuhrman, J.A. and R. L. Ferguson. 1986. Low concentrations and rapid turnover of dissolved free amino acids in seawater: chemical and microbiological measurements. Mar. Ecol. Prog. Ser. 33: 237-242

27. Fuhrman, J.A. 1987. Close coupling between release and uptake of dissolved free amino acids in seawater studied by an isotope dilution approach. Mar. Ecol. Prog. Ser. 37: 45-52

28. Lee, S. and J.A. Fuhrman. 1987. Relationships between biovolume and biomass of naturally-derived marine bacterioplankton. Appl. Environ. Microbiol. 53: 1298-1303

29. Boicourt, W.C., S.-Y.Chao, H.W. Ducklow, P.M. Glibert, T.C. Malone, M.R. Roman, J.A. Fuhrman, C. Garside, and R.W. Garvine. 1987. Physics and microbial ecology of a buoyant estuarine plume on the continental shelf. EOS, Trans. Am. Geophys. Union 68: 666-668

30. McManus, G.B. and J.A. Fuhrman. 1988. Control of marine bacterioplankton populations: a review of grazing rate methodologies and estimates. Hydrobiologia 159: 51-62.

31. Roman, M.R., H.W. Ducklow, J.A. Fuhrman, C. Garside, P.M. Glibert, T.C. Malone, and G.B. McManus. 1988. Production, consumption and nutrient cycling in a laboratory mesocosm. Mar. Ecol. Prog. Ser. 42: 39-52

32. McManus, G.B. and J.A. Fuhrman. 1988. Clearance of bacteria-sized particles by natural populations of nanoplankton in the Chesapeake Bay outflow plume. Mar. Ecol. Prog. Ser. 42: 199-206

33. Fuhrman, J.A., D.E. Comeau, Å. Hagström, and A.M. Chan. 1988. Extraction of DNA suitable for molecular biological studies from natural planktonic microorganisms. Appl. Environ. Microbiol. 54: 1426-1429

34. Hudak, J.P. and J.A. Fuhrman. 1988. Effects of four organic pollutants on the growth of natural marine bacterioplankton populations. Mar. Ecol. Prog. Ser. 47: 185-194

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35. Fuhrman, J.A., S.G. Horrigan, and D.G. Capone. 1988. The use of 13N as tracer for bacterial and algal uptake of ammonium from seawater. Mar. Ecol. Prog. Ser. 45: 271-278

36. Hudak, J.P., J. McDaniel, S. Lee, and J.A. Fuhrman. 1988. Mineralization potentials of aromatic hydrocarbons by estuarine microorganisms: variations with season, location, and bacterioplankton production. Mar. Ecol. Prog. Ser. 47: 97-102

37. Mitchell, J.G. and J.A. Fuhrman. 1989. Centimeter scale vertical heterogeneity in bacteria and chlorophyll a. Mar. Ecol. Prog. Ser. 54: 141- 148

38. Fuhrman, J.A., T.D. Sleeter, C. Carlson, and L.M. Proctor. 1989. Dominance of bacterial biomass in the Sargasso Sea and its ecological implications. Mar. Ecol. Prog. Ser. 57: 207-217

39. Fuhrman, J.A. and S. Lee. 1989. Natural microbial species variations studied at the DNA level. In: Recent advances in microbial ecology. T. Hattori, Y. Ishida, Y. Maruyama, R.Y. Morita, and A. Uchida, eds. Japan Scientific Societies Press, Tokyo. pp. 687-691

40. Mitchell, J.G., A. Okubo, J.A. Fuhrman, and W. Cochlan. 1989. The contribution of phytoplankton to ocean density gradients. Deep Sea Res. 36: 1277-1282

41. Proctor, L.M. and J.A. Fuhrman. 1990. Viral mortality of marine cyanobacteria and bacteria. Nature 343: 60-62

42. McManus, G.B., and J.A. Fuhrman. 1990. Mesoscale and seasonal variability of heterotrophic nanoflagellate abundance in an estuarine outflow plume. Mar. Ecol. Prog. Ser. 61: 207-213

43. Lee, S. and J.A. Fuhrman. 1990. DNA hybridization to compare species compositions of natural bacterioplankton assemblages. Appl. Environ. Microbiol. 56: 739-746

44. Suttle, C.A., J.A. Fuhrman, and D.G. Capone. 1990. Rapid ammonium cycling and concentration-dependent partitioning of ammonium and phosphate: implications for carbon transfer in planktonic communities. Limnol. Oceanogr. 35: 424-433

45. Mitchell, J.G., A. Okubo, and J.A. Fuhrman. 1990. Gyrotaxis as a new mechanism for generating plankton heterogeneity and migration. Limnol. Oceanogr. 35: 123-130

46. Fuhrman, J.A. 1990. Dissolved free amino acid cycling in an estuarine outflow plume. Mar. Ecol. Prog. Ser. 66: 197-203

47. Proctor. L.M. and J.A. Fuhrman. 1991. The roles of viral infection in organic particle flux. Mar. Ecol. Prog. Ser. 69: 133-142

48. Suttle, C.A., A.M. Chan, and J.A. Fuhrman. 1991. Dissolved free amino acids in the Sargasso Sea: uptake and respiration rates, turnover times, and concentrations. Mar. Ecol. Prog. Ser. 70: 189-199

49. Glibert, P.M, C. Garside, J.A. Fuhrman, and M.R. Roman. 1991.Time-dependent coupling of inorganic and organic nitrogen uptake and ammonium regeneration in the plume of Chesapeake Bay Estuary, USA and its regulation by large heterotrophs. Limnol. Oceanogr. 36: 895-909

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50. Lee, S.H. and J.A. Fuhrman. 1991. Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross-hybridization. Limnol. Oceanogr. 36: 1277-1287

51. Fuhrman, J.A. and D.G. Capone. 1991. Possible biogeochemical consequences of ocean fertilization. Limnol. Oceanogr. 36: 1951-1959

52. Lee, S.H. and J.A. Fuhrman. 1991. Confinement effect on species composition of bacterioplankton studied at the level of community DNA. Mar. Ecol. Prog. Ser. 79: 195-201

53. Fuhrman, J.A., K. McCallum, and A.A. Davis. 1992. Novel major archaebacterial group from marine plankton. Nature (London) 356: 148-149

54. Fuhrman, J.A. 1992. Bacterioplankton roles in cycling of organic matter: the microbial food web. In P.G. Falkowski and A.D. Woodhead (editors), Primary Productivity and Biogeochemical Cycles in the Sea. Plenum Press, New York. pp. 361-383

55. Kristiansen, K., H. Nielsen, B. Riemann, and J.A. Fuhrman. 1992. Growth efficiencies of freshwater bacterioplankton. Microb. Ecol. 24: 145-160

56. Fuhrman, J.A. 1992. Bacterial growth in the sea (Current Contents Citation Classic). Current Contents: Agriculture, Biology, and Environmental Sciences, 23: 8 (not reviewed)

57. Proctor, L.M. and J.A. Fuhrman. 1992. Mortality of marine bacteria in response to enrichments of the virus size fraction from seawater. Mar. Ecol. Prog. Ser.87: 283-293

58. Fuhrman, J.A., K. McCallum, and A.A. Davis. 1993. Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl. Environ. Microbiol. 59: 1294-1302

59. Proctor, L.M., A. Okubo, and J.A. Fuhrman. 1993. Calibrating estimates of phage-induced mortality in marine bacteria: Ultrastructural studies of marine bacteriophage development from one-step growth experiments. Microb. Ecol. 25: 161-182

60. Fuhrman, J.A. and C. A. Suttle. 1993. Viruses in marine plankton. Oceanography 6: 51-63

61. Fuhrman, J.A. 1993. Measuring marine bacterial growth (Current Contents Citation Classic). Current Contents: Agriculture, Biology, and Environmental Sciences 24: 8 (not reviewed)

62. Fuhrman, J.A., R.M. Wilcox, R.T. Noble, and N.C. Law. 1993. Viruses in marine food webs.In Guerrero, R. and C. Pedros-Alio (eds). Trends in microbial ecology. Spanish Society for Microbiology, Barcelona. pp. 295-298.

63. Fuhrman, J.A., S.H. Lee, Y. Masuchi, A.A. Davis, and R.M. Wilcox. 1994. Characterization of marine prokaryotic communities via DNA and RNA. Microb. Ecol. 28:133-145

64. Wilcox, R.M. and J.A. Fuhrman. 1994. Bacterial viruses in coastal seawater: lytic rather than lysogenic production. Mar. Ecol. Prog. Ser. 114: 35-45

65. Lee, S.H., Y-C. Kang, and J.A. Fuhrman. 1995. Imperfect retention of natural bacterioplankton cells by glass fiber filters. Mar. Ecol. Prog. Ser. 119: 285-290

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66. Fuhrman, J.A. and R.T. Noble. 1995. Viruses and protists cause similar bacterial mortality in coastal seawater. Limnol. Oceanogr. 40: 1236-1242

67. Thingstad, T.F., J.R. Dolan, and J.A. Fuhrman. 1996. Loss rate estimates of an oligotrophic bacterial assemblage as measured by 3H-thymidine and 32PO4: good agreement and near-balance with production. Aquat. Microb. Ecol. 10: 29-36

68. Fuhrman, J.A. 1997. Community structure: Bacteria and Archaea. In: C.J. Hurst, G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, M.V. Walter, eds., Manual of Environmental Microbiology. ASM Press, Washington DC, pp. 278-283

69. Noble, R.T., and J.A. Fuhrman. 1997. Virus decay and its causes in coastal waters. Appl. Environ. Microbiol. 63:77-83

70. Karner, M. and J.A. Fuhrman. 1997. Determination of “active” marine bacterioplankton: a comparison of universal 16S rRNA probes, autoradiography, and nucleoid staining. Appl. Environ. Microbiol. 63: 1208-1213

71. Fuhrman, J.A., and A.A. Davis.1997. Widespread Archaea and novel Bacteria from the deep sea as shown by 16S rRNA gene sequences. Mar. Ecol. Prog. Ser. 150: 275-285

72. Ouverney, C.C. and J.A. Fuhrman. 1997. Increasing fluorescence of 16S rRNA in situ hybridization with chloramphenicol. Appl. Environ. Microbiol. 63: 2735-2740

73. Noble, R.T., and J.A. Fuhrman. 1998. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14: 113-118

74. Fuhrman, J.A. and L. Campbell. 1998. Microbial microdiversity. Nature (London) 393: 410-411

75. Fuhrman, J.A. and C. C. Ouverney. 1998. Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native archaea with fluorescent single cell probes. Aquat. Ecol. 32: 3-15

76. Ouverney, C.C. and J.A. Fuhrman. 1999. Combined microautoradiography -16S rRNA probe technique for the determination of radioisotope uptake by specific microbial cell types in situ. Appl. Environ. Microbiol. 65:1746-1752

77. Noble, R.T., M. Middelboe, and J.A. Fuhrman. 1999. The effects of viral enrichment on the mortality and growth of heterotrophic bacterioplankton. Aquat. Microb. Ecol. 18:1-13

78. Fuhrman, J.A. 1999. Marine viruses and their biogeochemical and ecological effects. Nature (London) 399: 541-548

79. Noble, R.T. and J.A. Fuhrman. 1999. Breakdown and microbial uptake of marine viruses and other lysis products. Aquat. Microb. Ecol. 20:1-11

80. Gasol, J.M.,U. L. Zweifel, F. Peters, J.A. Fuhrman, and Å. Hagström. 1999. Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl. Environ. Microbiol. 65:4475-4483

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81. Fuhrman, J.A. and R.T. Noble. 2000. Causative agents of bacterial mortality and the consequences to marine food webs. In Microbial biosystems: new frontiers. Proc 8th Int Symp Microb. Ecol. (ed. Bell, C.R., Brylinsky, M, & Johnson-Green, P.). Atlantic Canada Society for Microbial Ecology, Halifax, Canada pp. 145-151

82. Fuhrman, J.A. 2000. Impact of viruses on planktonic bacteria. In: Microbial Ecology of the Oceans, D.L. Kirchman (ed.), Wiley & Sons. pp 327 - 350 83. Noble, R.T and, J. A. Fuhrman. 2000. Rapid viral production and removal as measured with fluorescently labeled viruses as tracers. Appl. Environ. Microbiol.. 66:3790-3797

84. Ouverney, C.C. and J.A. Fuhrman. 2000. Marine planktonic Archaea take up amino acids. Appl. Environ. Microbiol. 66:4829-4833

85. Fuhrman, J.A. 2000. Microbial Contamination. In: Opportunities for Environmental Applications of Marine Biotechnology. National Academy Press, Washington DC, pp. 102-111

86. Fuhrman, J.A., and D.G. Capone. 2001. Nifty nanoplankton. Nature (London) 412: 593-594

87. Hewson, I., J. M. O’Neil, J. A. Fuhrman, W.C. Dennison. 2001. Virus-like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries. Limnol Oceanogr. 46:1734-1746

88. Noble, R.T. and J.A. Fuhrman. 2001. Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: Low correlation to bacterial indicator levels. Hydrobiologia 460:175-184.

89. Fuhrman, J.A. 2001. Plankton Viruses. In: Encyclopedia of Ocean Sciences, vol. 1, J. Steele, S. Thorpe and K. Turekian, eds. Academic Press, London. pages 2200-2207

90. Fuhrman, J.A. 2001. Community structure: Bacteria and Archaea. In: C.J. Hurst, R.L. Crawford, G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, eds., Manual of Environmental Microbiology, 2nd edition. ASM Press, Washington DC , pages 371-377

91. Fuhrman, J. A., J. F. Griffith, and M. S. Schwalbach. 2002. Prokaryotic and viral diversity patterns in marine plankton. Ecological Research 17 (2): 183-194

92. Fuhrman, J.A. 2002. Viruses in the Marine Environment. In: Encyclopedia of Environmental Microbiology, G. Bitton, ed., Wiley & Sons, New York pages 3300-3310

93. Staley, J.T. and J.A. Fuhrman. 2002. Microbial Diversity. In: Encyclopedia of global environmental change, vol. 2, The Earth system: biological and ecological dimensions of global environmentalchange, H.A. Mooney and J.G. Canadell, editors. Wiley & Sons, Chichester UK. pp 421-425

94. Fuhrman, J.A. 2002. Community structure and function in prokaryotic marine plankton. Antonie van Leeuwenhoek 81:521-527

95. Jiang, S., W. Fu, W, Chu, and J.A. Fuhrman. 2003. The vertical distribution and diversity of marine bacteriophage at a station off Southern California. Microb. Ecol. 45:399-410. Online DOI: 10.1007/s00248-002-1059-3

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96. Hewson I, and J. A. Fuhrman. 2003. Viriobenthos production and virioplankton sorptive scavenging by suspended sediment particles in coastal and pelagic waters. Microbial Ecology 46: 337-347

97. Gonzalez, J. M., J. S. Covert, W. B. Whitman, J. R. Henriksen, F. Mayer, B. Scharf, R. Schmitt, A. Buchan, J. A. Fuhrman, R. P. Kiene and M. A. Moran. 2003. Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. Int. J. Syst. Evol. Microbiol. 53:1261-1269.

98. Boehm, A.B, J.A.Fuhrman, R.D.Mrše, and S. B.Grant. 2003 A tiered approach for identfication of a human fecal pollution source at a recreational beach:case study at Avalon Bay, Catalina Island, California, USA. Env. Sci. & Tech. 37(4):673-680

99. Fuhrman, J.A. and M.S. Schwalbach. 2003. Viral influence on aquatic bacterial communities. Biol. Bulletin. 204: 192-195

100. Fuhrman, J. 2003. Genome sequences from the sea. Nature 424: 1001-1002

101. Hewson, I., G. A. Vargo, and J.A. Fuhrman. 2003. Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microbial Ecology 46: 322-336

102. Field, K.G., E. C. Chern, L. K. Dick, J. A. Fuhrman, J. Griffith, P. A. Holden, M.G. LaMontagne, J. Le, B. Olson, and M. T. Simonich. 2003. A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. J. Wat. Health 1(4): 181-194

103. Schwalbach, M.S., I. Hewson, and J.A. Fuhrman. 2004. Viral effects on bacterial community composition in marine plankton mesocosms. Aquat. Microb. Ecol. 34:117-127

104. Ouverney C.C., Fuhrman J.A. 2004. Correlating single-cell count with function in mixed natural microbial communities through STARFISH. In G. A. Kowalchuk, F. J. de Bruijn, I. M. Head, Akkermans, A.D.L., and J. D. van Elsas, editors. Molecular Microbial Ecology Manual, 2nd edition. Chapter 8.08: 1689-1710. Kluwer Academic Publishers, Dordrecht.

105. Hewson, I., Govil, S.R., Capone, D.G., Carpenter, E.J. and Fuhrman J.A. 2004 Evidence of Trichodesmium viral lysis and potential significance for biogeochemical cycling in the oligotrophic ocean. Aquatic Microbial Ecology 36: 1 - 8

106. Hewson, I, and J. A. Fuhrman. 2004. Bacterioplankton species richness and diversity along an estuarine gradient in Moreton Bay, Australia. Appl. Environ. Microbiol. 70(6): 3425-3433

107. Schwalbach, M.S. and J. A. Fuhrman. 2005. Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol. Oceanogr. 50: 620-628.

108. Brown, M.V., M.S. Schwalbach, I. Hewson and J. A. Fuhrman. 2005. Coupling 16S-ITS rDNA clone libraries and amplified ribosomal intergenic spacer analysis to show marine microbial diversity; development and application to a time series. Environ. Microbiol. 7: 1466-1479

109. Fuhrman, J.A., R.T. Noble, and X. Liang. 2005. Rapid detection of enteroviruses from small volumes of natural waters by real time RT-PCR. Appl. Environ Microbiol. 71:4523-4530

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110. Schwalbach, M.S., M. Brown and J. A.. Fuhrman. 2005. Impact of light on marine bacterioplankton community structure. Aquat. Microb. Ecol. 39: 235-245

111. Oremland, R.S., D. G. Capone, J.F. Stolz, and J.A. Fuhrman. 2005. Whither or Wither Geomicrobiology in the Era of “Community Metagenomics.” Nature Reviews Microbiology 3: 572-578 112. Brown, M.V.and J.A. Fuhrman. 2005. Marine bacterial microdiversity as revealed by internal transcribed spacer analysis. Aquat. Microb. Ecol. 41:15-23

113. Steele, J.A., F. Ozis, J.A. Fuhrman, J.S. Devinny. 2005. Structure of microbial communities in ethanol biofilters. Chemical Engineering Journal 113: 135-143

114. Hewson, I, and J.A. Fuhrman. 2006. Spatial and vertical biogeography of coral reef sediment bacterial and diazotroph communities . Marine Ecology Progress Series 306:79-86

115. Hewson, I, J. A. Steele, D.G. Capone , J.A. Fuhrman. 2006. Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters. Mar. Ecol. Ecol. Ser. 311: 67-77

116. Hewson, I., and J. A. Fuhrman. 2006. Improved strategy for comparing community fingerprints. Microbial Ecology. 51: 147-153 DOI: 10.1007/s00248-005-0144-9

117. Noble, R.T., J F. Griffith, A.D. Blackwood, J.A. Fuhrman, J B. Gregory, X Hernandez, X Liang, A.A. Bera, K. Schiff. 2006. Multi-tiered approach using quantitative polymerase chain reaction for tracking sources of fecal pollution to Santa Monica Bay, California. Appl. Environ. Microbiol. 72: 1604-1612

118. Hewson, I, J. A. Steele, D.G. Capone , J.A. Fuhrman. 2006. Remarkable heterogeneity in meso- and bathypelagic bacterioplankton community composition. Limnol. Oceanogr. 51: 1274-1283

119. Hughes Martiny, J. B. , B.J.M. Bohannan, J.H. Brown, R. Colwell, J.A. Fuhrman, J. Green, M. C. Horner-Devine, M. Kane, J. A. Krumins, C. R. Kuske, P. Morin, S. Naeem, L. Øvreås, A-L. Reysenbach, V. Smith, J. Staley. 2006. Microbial biogeography: Putting microorganisms on the map. Nature Reviews Microbiology 4:102-112

120. Ruan, Q. , J. A. Steele, M..S. Schwalbach, J.A. Fuhrman, F. Sun. 2006. A Dynamic Programming Algorithm for Binning Microbial Community Profiles. Bioinformatics 22: 1508-1514 doi:10.1093/bioinformatics/btl114

121. Fuhrman, J.A., I. Hewson, M.S. Schwalbach, J. Steele, Mark V. Brown, and S. Naeem. 2006. Annually reoccurring bacterial communities are predictable from ocean conditions. Proc. Natl. Acad. Sci. USA, 103:13104-13109

122. Ruan, Q., D. Dutta, M.S. Schwalbach, J. A. Steele, J.A. Fuhrman, and F. Sun. 2006. Local Similarity Analysis Reveals Unique Associations Among Marine Bacterioplankton Species and Environmental Factors. Bioinformatics. 20: 2532-2538. PMID: 16882654

123. Honjo, M, K. Matsui, M. Ueki, R. Nakamura, J.A. Fuhrman, and Z. Kawabata. 2006. Diversity of virus like agents killing Microcystis aeruginosa in a hyper-eutrophic pond. Journal of Plankton Research 28:407-412

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124. Hewson, I., D.G. Capone, J. A. Steele, and J.A. Fuhrman. 2006. Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the West Tropical Atlantic. Aquat. Microb. Ecol. 43:11-22

125 Hewson, Ian, and Jed A. Fuhrman. 2006. Viral impacts upon marine bacterioplankton assemblage structure. J. Mar. Biol. Asoc U.K. 86: 577-589

126. Hewson I., D.M. Winget, K.E.Williamson, J.A. Fuhrman and K. E. Wommack. 2006. Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico). J. Mar. Biol. Asoc U.K. 86: 591-603

127. Fuhrman, J.A. Community Structure: Bacteria and Archaea. 2007. In: Christon J. Hurst, Ronald L. Crawford, Jay L. Garland, David A. Lipson, Aaron L. Mills, Linda D. Stetzenbach (eds.). Manual of Environmental Microbiology, 3rd edition. ASM Press, Washington, D.C. Section IV, Chap 35.

128. Hewson, I. and J.A. Fuhrman. 2007. Characterization of lysogens in bacterioplankton assemblages of the Southern California Borderland. Microbial Ecology 53: 631-638

129. Horner-Devine, M. Claire , Jessica M. Silver, Mathew A. Leibold, Brendan J. M. Bohannan,Robert K. Colwell, Jed A. Fuhrman, Jessica L. Green, Cheryl R. Kuske, Jennifer B. H. Martiny,Gerard Muyzer, Lise Øvreas, Anna-Louise Reysenbach, and Val H. Smith. 2007. A comparison of taxon co-occurrence patterns for macro- and microorganisms. Ecology 88:1345-1353

130. Hewson, I., Fuhrman, J.A. 2007. Covariation between viral parameters with bacterial assemblage richness and diversity in the water column and sediments. Deep Sea Research I. 54: 811-830 idoi:10.1016/j.dsr.2007.02.003

131. Hewson, I., Myrna E. Jacobson/Meyers and J. A. Fuhrman. 2007. Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands. Environmental Microbiology 9: 923–933

132. Patel, A, R.T. Noble, J.A. Steele, M.S. Schwalbach, I. Hewson, and J.A. Fuhrman. 2007. Virus and prokaryote enumeration from planktonic marine environments by epifluorescence microscopy with SYBR Green I. Nature Protocols 2: 269-276

133. Fuhrman, J.A. and Åke Hagström. 2008. Bacterial and archaeal community structure and its patterns. In D.L. Kirchman (ed.) Microbial Ecology of the Oceans, 2nd edition. Wiley ISBN 978-0-470-04344-8. 593 pp.

134. Fuhrman, J.A. 2008. Measuring diversity. In K. Zengler (ed.) Accessing Uncultivated Microorganisms. ASM Press. ISBN:978-1-55581-406-9. 320 pages

135. Fuhrman, J.A., M.S. Schwalbach, U. Stingl. 2008. Proteorhodopsins: an array of physiological roles? Nature Reviews Microbiology. 6: 488-494

136. Fuhrman, J.A., J. A. Steele, I. Hewson, M. S. Schwalbach, M.V. Brown, J. L. Green, J. H. Brown. 2008. A latitudinal diversity gradient in planktonic marine bacteria.. Proc. Nat. Acad. Sci. USA. 105: 7774-7778

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137. Hewson, I. and J.A. Fuhrman. 2008. Viruses, bacteria and the microbial loop. In D.G. Capone, D. A. Bronk, M. R. Mulholland and E. J. Carpenter (ed.), Nitrogen in the marine environment, Second edition. Elsevier.

138. Fuhrman, J.A. and J.A. Steele. 2008. Community structure of marine bacterioplankton: patterns, networks, and relationships to function. Aquat. Microb. Ecol. 53: 69-81

139. Fuhrman, J.A. 2009. Microbial community structure and its functional implications. Nature. 459: 193-199

140. Brown, M.V., G.K. Philip, J.A. Bunge, M.C. Smith, A. Bissett, F.M. Lauro, J.A. Fuhrman, S. P. Donachie. 2009. Microbial community structure in the North Pacific Ocean. ISME Journal.3: 1374-1386. doi: 10.1038/ismej.2009.86

141. Böer, Simone, Stefanie Hedtkamp, Justus van Beusekom, Jed A. Fuhrman, Antje Boetius, Alban Ramette. 2009. Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sandy sediments. ISME Journal 3:780-791

142. Griffith, J.F. K. D. Schiff, G. Lyon and J.A. Fuhrman. 2010. Microbiological water quality at non-human impacted reference beaches in Southern California during wet weather. Marine Pollution Bulletin. 60(4): 500-508. doi:10.1016/j.marpolbul.2009.11.015

143. Beman, J. M., R. Sachdeva, and J.A. Fuhrman. 2010. Population ecology of nitrifying Archaea and Bacteria in the Southern California Bight. Envir. Microbiol. 12: 1282-1292. Online doi:10.1111/j.1462-2920.2010.02172.x

144. Suttle, C. A., and J. A. Fuhrman. 2010. Enumeration of virus particles in aquatic or sediment samples by epifluorescence microscopy, p. 145–153. In S. W. Wilhelm, M. G. Weinbauer, and C. A. Suttle [eds.], Manual of Aquatic Viral Ecology. Waco, TX:American Society of Limnology and Oceanography. doi:10.4319/mave.2010.978-0-9845591-0-7. http://www.aslo.org/books/mave/

145. Bertics V.J. , J A. Sohm, T. Treude, C-E T. Chow, D. G. Capone, J. A. Fuhrman, and W. Ziebis. 2010. Burrowing deeper into benthic nitrogen fixation: The impact of bioturbation on nitrogen fixation coupled to sulfate reduction in coastal sediments. Mar. Ecol. Prog. Ser. 409: 1–15

146. Beman, J.M., C.-E. Chow, B. N. Popp, J.A. Fuhrman, A. Andersson, Y. Feng, A.L. King, D.A. Hutchins. 2011. Global declines in ammonia oxidation as a consequence of ocean acidification. Proc. Nat. Acad. Sci USA. 108: 208-213 (online 20 December 2010) doi:10.1073/pnas.1011053108

147. Perrings, C., Naeem, S., Ahrestani, F., Bunker, D. E., Burkill, P., Canziani, G., Elmqvist, T., Ferrati, R., Fuhrman, J., Jaksic, F., Kawabata, Z., Kinzig, A., Mace, G. M., Milano, F., Mooney, H., Prieur-Richard, A.-H., Tschirhart, J. & Weisser, W. 2010. Ecosystem Services for 2020. Science 330: 323-324.

148. Hewson, Ian; Chow, Cheryl; and Fuhrman, Jed A. 2010. Ecological Role of Viruses in Aquatic Ecosystems. In: Encyclopedia of Life Sciences 2010, John Wiley & Sons, Ltd: Chichester http://www.els.net/ [DOI: 10.1002/9780470015902.a0022546]

149. Danovaro, Roberto, Cinzia Corinaldesi, Antonio Dell’Anno, Jed A. Fuhrman, Jack J. Middelburg, Rachel T. Noble and Curtis Suttle. 2011. Marine viruses and global climate change. FEMS Microbiology Reviews. 35: 993–1034 doi: 10.1111/j.1574-6976.2010.00258.x

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150. Beman J. Michael, Joshua A. Steele, and Jed A. Fuhrman. 2011. Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California. ISME Journal 5:1077–1085; doi:10.1038/ismej.2010.204

151. Steele , J. A., Peter D. Countway, L. Xia, P. D. Vigil, J. M. Beman, D. Y.Kim, C-E. T. Chow, R. Sachdeva, A. C. Jones, M. S. Schwalbach, J. M. Rose, I. Hewson, A. Patel, F. Sun, D. A. Caron, J. A. Fuhrman. 2011. Marine bacterial, archaeal, and protistan association networks reveal ecological linkages. ISME J. 5(9):1414-25. doi: 10.1038/ismej.2011.24.

152. Perrings, C., Shahid Naeem, Farshid S Ahrestani, Daniel E Bunker, Peter Burkill, Graciela Canziani, Thomas Elmqvist, Jed A Fuhrman, Fabian M Jaksic, Zen'ichiro Kawabata, Ann Kinzig, Georgina M Mace, Harold Mooney, Anne-Hélène Prieur-Richard, John Tschirhart, Wolfgang Weisser. 2011. Ecosystem services, targets, and indicators for the conservation and sustainable use of biodiversity. Frontiers in Ecology and the Environment. 9: 512-520 doi:10.1890/100212

153. Romero, Isabel C., Myrna Jacobson, Jed A. Fuhrman, Marilyn Fogel Douglas G. Capone, 2011. Long-term nitrogen and phosphorus fertilization effects on N2 fixation rates and nifH gene community patterns in mangrove sediments. Mar. Ecol (2012) 33: 117–127. Article first published online : 14 JUN 2011, DOI: 10.1111/j.1439-0485.2011.00465. 154. Yilmaz, Pelin; Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler, Jack A. Gilbert, Ilene Karsch-Mizrachi, Anjanette Johnston, Guy Cochrane, Robert Vaughan, Christopher Hunter, Joonhong Park, Norman Morrison, Phillipe Rocca-Serra, Peter Sterk, Mani Arumugam, Laura Baumgartner, Bruce W. Birren, Martin J. Blaser, Vivien Bonazzi, Peer Bork, Pier Luigi Buttigieg, Patrick Chain, Elizabeth K. Costello, Heather Huot-Creasy, Peter Dawyndt, Todd DeSantis, Noah Fierer, Jed Fuhrman, Rachel E. Gallery, Richard A. Gibbs, Michelle Gwinn Giglio, Inigo San Gil, Elizabeth M. Glass, Antonio Gonzalez, Jeffrey I. Gordon, Robert Guralnick, Wolfgang Hankeln, Sarah Highlander, Philip Hugenholtz, Janet Jansson, Jerry Kennedy, Dan Knights, Omry Koren, Justin Kuczynski, Nikos Kyrpides, Robert Larsen, Christian L. Lauber, Teresa Legg, Ruth E. Ley, Catherine A. Lozupone, Wolfgang Ludwig, Donna Lyons, Eamonn Maguire, Barbara A. Methé, Folker Meyer, Sara Nakielny, Karen E. Nelson, Diana Nemergut, Josh D. Neufeld, Norman R. Pace, Giriprakash Palanisamy, Jörg Peplies, Jane Peterson, Joseph Petrosino, Lita Proctor, Jeroen Raes, Sujeevan Ratnasingham, Jacques Ravel, David A. Relman, Susanna Assunta-Sansone, Lynn Schriml, Erica Sodergren, Aymé Spor, Jesse Stombaugh, James M. Tiedje, Doyle V. Ward, George M. Weinstock, Doug Wendel, Owen White, Andreas Wilke, Jennifer Wortmann & Frank Oliver Glöckner. 2011. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. Nature Biotechnology. 29:415–420 doi:10.1038/nbt.1823

155. Zinger L., Amaral-Zettler, L.A., Fuhrman, J.A., Horner-Devine, M.C., Huse, S.M., Mark Welch, D.B., Martiny, J.B.H., Neal, P.R., Sogin, M., Boetius A., Ramette A. 2011. Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems. PLoS ONE 6(9): e24570. doi:10.1371/journal.pone.0024570

156. Gilbert, Jack A., Joshua Steele, J. Gregory Caporaso, Lars Steinbrück, Jens Reeder, Ben Temperton, Susan Huse, Ian Joint, Alice C. McHardy, Rob Knight, Paul Somerfield, Jed A. Fuhrman, Dawn Field. 2011. Defining seasonal marine microbial community dynamics. The ISME Journal (2012) 6: 298–308; doi:10.1038/ismej.2011.107; published online 18 August 2011

157. Fuhrman, J.A. 2011. Oceans of Crenarchaeota: a personal history describing this paradigm shift. Microbe. 6: 531-537. online version

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158. Xia L.C., Cram J.A., Chen T., Fuhrman J.A., Sun F. 2011. Accurate genome relative abundance estimation based on shotgun metagenomic reads. PLoS ONE 6(12): e27992. doi:10.1371/journal.pone.0027992

159. Xia, Li C., Joshua A. Steele, Jacob A. Cram, Zoe G. Cardon , Sheri L. Simmons , Joseph J. Vallino, Jed A. Fuhrman , Fengzhu Sun. 2011. Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. BMC Systems Biology. 5(Suppl 2):S15  doi:10.1186/1752-0509-5-S2-S15

160. Hanson China, Horner-Devine M. Claire, Martiny Jennifer B.H., and Fuhrman Jed A. 2013. Microbial Biogeography. In: Levin S.A. (ed.) Encyclopedia of Biodiversity, second edition, Volume 5, pp. 271-279. Waltham, MA: Academic Press

161. Chang, Qin, Yihui Luan, Ting Chen, Jed A. Fuhrman, Fengzhu Sun. 2012. Computational methods for the analysis of tag sequences in metagenomics studies. Frontiers in Bioscience. S4: 1333-1343 . doi 10.2741/335

162. Freitas, Sara, Stephen Hatosy, Jed A. Fuhrman, Susan M. Huse, David B. Mark Welch, Mitchell L. Sogin, and Adam C. Martin. 2012. Global Distribution and Diversity of Marine Verrucomicrobia. ISME Journal 6: 1499–1505; doi:10.1038/ismej.2012.3

163. Knight, Rob, Janet Jansson, Dawn Field, Noah Fierer, Narayan Desai, Jed A. Fuhrman, Phil Hugenholtz, Folker Meyer, Rick Stevens, Mark J. Bailey, Jeffrey I. Gordon, George A. Kowalchuk, Daniel van der Lelie, Jack A. Gilbert. 2012. The hype, the promises and developing hypotheses: Towards replicated experimental designs that deliver on the true potential of metagenomics. Nature Biotechnology 30(6):513-20 doi:10.1038/nbt.2235

164. Chow, C-E.T., and J.A. Fuhrman. 2012. Seasonality and monthly dynamics of marine myovirus communities. Envir. Microbiol. 14(8): 2171–2183 DOI: 10.1111/j.1462-2920.2012.02744.x

165. Hanson, China, Claire Horner-Devine, Jed A. Fuhrman, Jennifer B. H. Martiny. 2012. Beyond biogeographic patterns: evolutionary and ecological processes that shape the microbial landscape. Nature Reviews Microbiology 10: 497-506. doi:10.1038/nrmicro2795

166. Brown, Mark V, Federico M. Lauro, Les Muir, David Wilkins, Matthew Z. DeMaere, Torsten Thomas, Martin Riddle, Jed A. Fuhrman, Cynthia Andrews-Pfannkoch, Matthew Lewis, Jeffrey M. Hoffman, Andrew Allen, Stephen R. Rintoul & Ricardo Cavicchioli. 2012. Global biogeography of SAR11 marine bacteria. Molecular Systems Biology 8: 595; doi:10.1038/msb.2012.28

167. Fuhrman, J.A. 2012. Metagenomics and its connection to microbial community organization. F1000 Biology Reports 2012, 4:15 (doi:10.3410/B4-15) URL: http://f1000.com/reports/b/4/15/

168. Amend, Anthony S., Tom A. Oliver, Linda A. Amaral-Zettler, Antje Boetius, Jed A. Fuhrman, M. Claire Horner-Devine, Susan M. Huse, David B. Mark Welch, Adam C. Martiny, Alban Ramette, Lucie Zinger, Mitchell L. Sogin, and Jennifer H. Martiny. 2013. Macroecological patterns of marine Bacteria on a global scale. J. Biogeography. 40:800-811 doi:10.1111/jbi.12034  

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169. Xia, Li, Dongmei Ai, Jacob Cram, Jed Fuhrman, Fengzhu Sun. 2013. Efficient statistical significance approximation for local association analysis of high-throughput time series data. Bioinformatics 29(2):230-7. doi: 10.1093/bioinformatics/bts668. Epub 2012 Nov 23.

170. Needham, David M., Cheryl-Emiliane T. Chow, Jacob A. Cram, Rohan Sachdeva, Alma Parada, Jed A. Fuhrman.2013. Short-term observations of marine bacterial and viral communities: patterns, connections, and resilience. ISME J 7:1274–1285;online February 2013 doi:10.1038/ismej.2013.19.

171. Riedel, Thomas, Laura Gómez-Consarnau, Jurgen Tomasch, Madeleine Martin, Michael Jarek,Jose´ M. Gonzalez, Stefan Spring, Meike Rohlfs, Thorsten Brinkhoff, Heribert Cypionka,Markus Goeker, Anne Fiebig, Johannes Klein, Alexander Goesmann, Jed A. Fuhrman, Irene Wagner-Doebler. 2013. Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein. PLoS ONE 8(3): 57487 DOI: 10.1371/journal.pone.0057487

172. Harwood, Valerie J., Alexandria B. Boehm, Lauren Sassoubre, Vijay Kannappan, Jill R. Stewart, Theng-Theng Fong, Marie-Paule Caprais, Reagan R. Converse, David Diston, James Ebdon, Jed A. Fuhrman, Michele Gourmelon, Jennifer Gentry-Shields, John F. Griffith, Donna Kashian, Rachel T. Noble, Huw Taylor, and Melanie Wicki. 2013. Performance of Viruses and Bacteriophages for Fecal Source Determination in a Multi-Laboratory, Comparative Study (SIPP). Water Research 47: 6929-6943. http://dx.doi.org/10.1016/j.watres.2013.04.064.

173. Hatosy, Stephen M., Jennifer B. H. Martiny, Rohan Sachdeva, Joshua Steele, Jed A. Fuhrman, Adam C. Martiny. 2013. Beta-diversity of marine bacteria depends on temporal scale. Ecology, 94:1898-1904; doi 10.1890/12-2125.1 (online May 2013)

174. Chow, Cheryl-Emiliane T., Rohan Sachdeva, Jacob A. Cram, Joshua A Steele, David M. Needham, Anand Patel, Alma E. Parada, and Jed A. Fuhrman. 2013. Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight. The ISME Journal (2013) 7, 2259–2273; doi:10.1038/ismej.2013.122; published online 18 July 2013

175. Pagarete, A., Chow, C-E.T., Johannessen, T., Fuhrman, J.A., Thingstad, T.F., Sandaa, R.A. 2013. Strong seasonality and inter-annual recurrence in marine myovirus communities. Appl. Environ Microbiol. 79:20 6253-6259; online August 2013 doi:10.1128/AEM.01075-13

176. Chow, Cheryl-Emiliane T., Diane Y. Kim, Rohan Sachdeva, David A. Caron, and Jed A. Fuhrman. 2014. Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists. ISME Journal 8: 816-829 doi:10.1038/ismej.2013.199

177. Cram, Jacob A., Cheryl-Emiliane T. Chow, Rohan Sachdeva, David M. Needham, Alma E. Parada, Joshua A. Steele, Jed A. Fuhrman. 2014. Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years. ISME Journal 9, 563–580 doi:10.1038/ismej.2014.153178. Cram, Jacob, Fengzhu Sun and Jed A. Fuhrman. 2014. “Marine Bacterial, Archaeal, and Protistan Association Networks.” in Encyclopedia of Metagenomics. Springer. DOI 10.1007/978-1-4614-6418-1_721-3

179. Weitz, Joshua S., Charles A. Stock, Steven W. Wilhelm, Lydia Bourouiba, Alison Buchan, Maureen L. Coleman, Michael J. Follows, Jed A. Fuhrman, Luis F. Jover, Jay T. Lennon, Mathias Middelboe, Derek L. Sonderegger, Curtis A. Suttle, Bradford P. Taylor, T. Frede Thingstad, Willie H. Wilson and K.

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Eric Wommack. 2014. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. ISME Journal, 9, 1352–1364; doi: 10.1038/ismej.2014.220

180. Fuhrman, Jed A, Jacob Cram, David M. Needham. 2015. Marine microbial dynamics and their ecological interpretation. Nature Reviews Microbiology, 13: 133 - 146 doi:10.1038/nrmicro3417

181. Cram, Jacob A, Li C. Xia, David M. Needham, Rohan Sachdeva, Fengzhu Sun, Jed A. Fuhrman. 2015. Cross-depth analysis of marine bacterial networks suggests downward propagation of temporalChanges. The ISME Journal 9, 2573–258, online publication 19 May 2015; doi: 10.1038/ismej.2015.76

182. Romero, Isabel C., Myrna E. Jacobson-Meyers, Jed A. Fuhrman, Douglas G. Capone. 2015 Phylogenetic diversity of diazotrophs along an experimental nutrient gradient in mangrove sediments. J. Mar. Sci. Eng. 2015, 3(3), 699-719; doi:10.3390/jmse3030699

183. Fuhrman J, Caron D. 2015. Heterotrophic Planktonic Microbes: Virus, Bacteria, Archaea, and Protozoa, p 4.2.2-1-4.2.2-34. In Yates M, Nakatsu C, Miller R, Pillai S (ed), Manual of Environmental Microbiology, 4th Edition. ASM Press, Washington, DC. doi: 10.1128/9781555818821.ch4.2.2

184. Xia, Li Charlie, Dongmei Ai, Jacob Cram, Xiaoyi Liang, Jed A Fuhrman, Fengzhu Sun. 2015 Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains. BMC Bioinformatics, 16:301 DOI: 10.1186/s12859-015-0732-8

185. Walters, William, Embriette R. Hyde, Donna Berg-Lyons, Gail Ackermann, Greg Humphrey, Alma Parada, Jack Gilbert, Janet K. Jansson, Greg Caporaso, Jed A. Fuhrman, Amy Apprill, Rob Knight. 2015.Improved V4, V4-5, and ITS marker gene primers for microbial community survey. mSystems Dec 2015, 1 (1), DOI: 10.1128/mSystems.00009-15

186. Parada, Alma, David M. Needham, and Jed A. Fuhrman. 2016. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time-series and global field samples. Envir. Microbiol. 18, (5)1403–1414, DOI: 10.1111/1462-2920.13023. Advanced online publication 18 August 2015

187. Gómez-Consarnau, L., J. M. González, T. Riedel, S. Jaenicke, S. A. Sañudo-Wilhelmy, I. Wagner-Döbler, J. A. Fuhrman. 2016. Proteorhodopsin light-enhanced growth linked to vitamin B1 acquisition in marine Flavobacteria. The ISME Journal 10: 1102–1112; doi:10.1038/ismej.2015.196; published online 17 November 2015

188. Cram, Jacob A., Alma E. Parada and Jed A. Fuhrman. 2016. Dilution reveals how viral lysis and grazing shape microbial communities. Limnol. Oceanogr. 61, 2016, 889–905. Advanced online 8 February 2016. DOI: 10.1002/lno.10259 PMID:25989373

189. Weiss S., Van Treuren W., Lozupone C., Faust K., Friedman J., Deng Y., Xia L.C., Xu Z.Z., Ursell L., Alm E.J., Birmingham A., Cram J.A., Fuhrman J.A., Raes J., Sun F., Zhou J., Knight R. 2016. Correlation detection strategies in microbial datasets vary widely in sensitivity and precision. ISME J. 10, 1669–1681; doi:10.1038/ismej.2015.235, advance online Feb 23 2016

190. Needham, David M., and J. A. Fuhrman. 2016. Pronounced daily succession of bloom associated phytoplankton, archaea, & bacteria. Nature Microbiology 1, 16005. 29 February 2016 doi: 10.1038/nmicrobiol.2016.5

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191. Wigington, Charles H, Derek L Sonderegger, Corina PD Brussaard, Alison Buchan, Jan F Finke, Jed A Fuhrman,Jay Lennon, Mathias Middelboe, Charles A Stock, Curtis A Suttle, William H Wilson, K. Eric Wommack, Steven W. Wilhelm, Joshua S Weitz. 2016. Re-examination of the relationship between marine virus and microbial cell abundances" Nature Microbiology 1: 15024, doi:10.1038/nmicrobiol.2015.24 .

192. Yang Lu, Ting Chen, Jed A. Fuhrman, and Fengzhu Sun. 2016. COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment, and paired-end read LinkAge. Bioinformatics. 33 (6): 791-798. doi:10.1093/bioinformatics/btw290

193. Bálint, Miklós; Mohammad Bahram, A. Murat Eren, Karoline Faust, Jed A. Fuhrman, Björn Lindahl, Robert B. O'Hara, Maarja Öpik, Mitchell L. Sogin, Martin Unterseher, Leho Tedersoo. 2016. Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. FEMS Microbiol Rev. 40 (5): 686-700. DOI: http://dx.doi.org/10.1093/femsre/fuw017 686-700

194. Zhang, Mengge, Lianping Yang, Jie Ren, Nathan Ahlgren, Jed Fuhrman and Fengzhu Sun. 2017. Prediction of virus-host infectious association by supervised learning methods. BMC Bioinformatics 2017 18(Suppl 3):60

195. Ahlgren, Nathan A., Jie Ren, Yang Young Lu, Jed A. Fuhrman, Fengzhu Sun. 2017. Alignment-free 𝑑2∗ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. Nucleic Acids Res. 45 (1): 39-53., doi: 10.1093/nar/gkw1002

196. David A. Caron, Paige E. Connell, Rebecca A. Schaffner, Astrid Schnetzer, Jed A. Fuhrman, Peter D. Countway, Diane Y. Kim. 2017. Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass. Deep-Sea Research Part 1. Advance online publication 3 Jaunary 2017, http://dx.doi.org/10.1016/j.dsr.2016.12.013

197. Needham, David M., Rohan Sachdeva, Jed A. Fuhrman. 2017. Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters.ISME Journal advance online publication 11 April 2017; doi: 10.1038/ismej.2017.29

198. Gómez-Consarnau, Laura, Naomi M. Levine, Lynda S. Cutter, Deli Wang, Brian Seegers, Javier Arístegui, Jed A. Fuhrman, Josep M. Gasol & Sergio A. Sañudo-Wilhelmy. Marine proteorhodopsins rival chlorophyll in solar energy capture. Submitted to Nature

199. Parada, Alma and Jed A. Fuhrman. 2017. Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor. ISME Journal advance online publication 21 July 2017; doi: 10.1038/ismej.2017.104

200. Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman, Michael S. Waterman and Fengzhu Sun. 2017. CAFE: aCcelerated Alignment-FrEe sequence analysis. Bioinformatics 45: W554-W559. DOI: 10.1093/nar/gkx351 201. Ahlgren, Nathan A., Yangyang Chen, David Needham, Alma E. Parada, RohanSachdeva, Vickie Trinh, Ting Chen, Jed A. Fuhrman. 2017. Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification, and multiple restriction systems. Envir. Microbiol. doi 10.1111/1462-2920.13768, online 26 May 2017

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202. Gómez-Consarnau L., R. Sachdeva, S. Gifford, L. S. Cutter, J. A. Fuhrman, S. A. Sañudo-Wilhelmy, M.A. Moran. Mosaic patterns of B-vitamin synthesis and utilization in a natural marine microbial community. Submitted to Envir. Microbiol.

203. Hernando-Morales, Víctor, Marta M Varela, David M. Needham, Jacob Cram, Jed A. Fuhrman, Eva Teira. Vertical and seasonal patterns control bacterioplankton communities at two horizontally coherent coastal upwelling sites off Galicia (NW Spain). Submitted to Microb. Ecol.

204. Ren, Jie, Nathan A. Ahlgren, Yang Young Lu, Jed A .Fuhrman, Fengzhu Sun. 2017. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. Microbiome 5:69, DOI: 10.1186/s40168-017-0283-5

205. Thompson, Luke R., Jon G. Sanders, Daniel McDonald, Amnon Amir, Joshua Ladau, Kenneth J.Locey, Robert J. Prill, Anupriya Tripathi, Sean M. Gibbons, Gail Ackermann, Jose A. Navas-Molina, Evguenia Kopylova, Yoshiki Vázquez-Baeza, Stefan Janssen, James T. Morton, Siavash Mirarab, Zhenjiang Zech Xu, Mohamed F. Haroon, Jad Kanbar, Qiyun Zhu, Antonio Gonzalez, Se Jin Song, Tomasz Kosciolek, Nicholas A. Bokulich, Joshua Lefler, Colin J. Brislawn, Greg C.Humphrey, Sarah M. Owens, Jarrad Hampton-Marcell, Donna Berg-Lyons, Valerie McKenzie,Noah Fierer, Jed A. Fuhrman, Aaron Clauset, Rick L. Stevens, Ashley Shade, Katherine S. Pollard, Kelly D. Goodwin, Janet K. Jansson, Jack A. Gilbert, Rob Knight & The Earth Microbiome Project Consortium. 2017. A communal catalogue reveals Earth's multiscale microbial diversity. Nature, in press.

206. Lu, Yang Young, Jinchi Lv, Jed A Fuhrman, Fengzhu Sun. 2017. Towards Enhanced and Interpretable Clustering/Classification in Integrative Genomics. Nucleic Acids Research in press

207. Berdjeb, Lyria. Alma Parada, David M. Needham, Jed A Fuhrman. Short-term dynamics and interactions of marine protist communities during the spring-summer transition. Submitted to ISME J

208. Sieradzki, Ella T., J. Cesar Ignacio-Espinoza, David M. Needham, Erin B Fichot, and Jed A. Fuhrman. 2017. Dynamic marine viral infections and major contribution to photosynthetic processes shown by regional and seasonal picoplankton metatranscriptomes. Biorxiv http://www.biorxiv.org/content/early/2017/08/17/176644 and submitted to Nature Microbiology

208. Steele, Joshua A., Michael S. Schwalbach, Rohan Sachdeva, Jed A. Fuhrman. Spatial scales of marine bacterioplankton assemblages in the Southern California Bight. Submitted

BOOK REVIEWS

Aquatic Microbiology, by G. Rheinheimer. American Scientist 76: 90 (1988)

PUBLISHED CORRESPONDENCE

Perrings, C., Naeem, S., Ahrestani, F., Bunker, D. E., Burkill, P., Canziani, G., Elmqvist, T., Ferrati, R., Fuhrman, J., Jasic, F., Kawabata, Z., Kinzig, A., Mace, G. M., Milano, F., Mooney, H., Richard, A.-H. P., Tschirhart, J. & Weisser, W. (2010) Biodiversity Transcends Services‚ Response. Science, 330: 1745.

REPORTS/COMMENTARY:Dagit, Rosi, Steve Williams, and Jed Fuhrman. 2005. Topanga Creek Watershed Water Quality Study Final Report. Resource Conservation District of the Santa Monica Mountians, Topanga, CA

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Noble T., Rachel, J.F. Griffith, A.D. Blackwood, J.A. Fuhrman, J.B. Gregory, X. Hernandez, X. Liang, A. A. Bera, K. Schiff. 2005. Multi-tiered approach using quantitative polymerase chain reaction for tracking sources of fecal pollution to Santa Monica Bay, California. Southern California Coastal Water Research Project, Westminster, CA.

Perrings, Charles, Shahid Naeem, Farshid Ahrestani, Dan Bunker, Peter Burkill , Graciela Canziani, Thomas Elmqvist, Rosana Ferrati, Jed Fuhrman, Fabian Jaksic, Zen Kawabata, Ann Kinzig, Georgina Mace, Fernando Milano, Harold Mooney, John Tschirhart, Wolfgang Weisser. 2010.Ecosystem services and target-setting for the protection of the global common wealth. DIVERSITAS Ecoservices Committee report to United Nations Environment Programme (UNEP). New York.

Jed A Fuhrman, Michael Follows, and Samantha Forde. 2013. Merging complex "-omic" data and computational ecosystem models. EOS 94:241 DOI: 10.1002/2013EO270006

Davies  Neil, Field,  Dawn, Amaral-Zettler  Linda, Clark S Melody, Deck  John, Drummond  Alexei, Faith P Daniel, Geller  Jonathan, Gilbert  Jack, Glöckner Oliver Frank, Hirsch  Penny, Leong  Jo-Ann, Meyer  Chris, Obst  Matthias, Planes  Serge, Scholin  Chris, Vogler P Alfried, Gates D Ruth, Toonen Rob, Berteaux-Lecellier  Véronique, Barbier  Michèle, Barker  Katherine, Bertilsson  Stefan, Bicak Mesude, Bietz J Matthew, Bobe  Jason, Bodrossy  Levente, Borja  Angel, Coddington  Jonathan, Fuhrman  Jed, Gerdts  Gunnar, Gillespie  Rosemary, Goodwin  Kelly, Hanson C Paul, Hero  Jean-Marc, Hoekman  David, Jansson  Janet, Jeanthon  Christian, Kao  Rebecca, Klindworth  Anna, Knight  Rob, Kottmann  Renzo, Koo S Michelle, Kotoulas  Georgios, Lowe J Andrew, Marteinsson Thór Viggó, Meyer  Folker, Morrison  Norman, Myrold D David, Pafilis  Evangelos, Parker  Stephanie, Parnell Jacob John, Polymenakou N Paraskevi, Ratnasingham  Sujeevan, Roderick K George, Rodriguez-Ezpeleta Naiara, Schonrogge  Karsten, Simon  Nathalie, Valette-Silver J Nathalie, Springer  Yuri, Stone N Graham, Stones-Havas  Steve, Sansone  Susanna-Assunta, Thibault M Kate, Wecker  Patricia, Wichels Antje, Wooley C John, Yahara  Tetsukazu, Zingone  Adriana. 2014. The founding charter of the Genomic Observatories Network., GigaScience. 2014, 3:2. DOI: 10.1186/2047-217X-3-2.URL: http://www.gigasciencejournal.com/content/3/1/2

Anna Kopf, Mesude Bica, Renzo Kottmann, Julia Schnetzer,, Ivaylo Kostadinov, Katja Lehmann, Antonio Fernandez-Guerra,, Christian Jeanthon, Eyal Rahav, Matthias Ullrich, Antje Wichels, Gunnar Gerdts, Paraskevi Polymenakou, Giorgos Kotoulas, Rania Siam, Rehab Z Abdallah, Eva C Sonnenschein, Thierry Cariou, Fergal O’Gara,, Stephen Jackson, Sandi Orlic, Michael Steinke, Julia Busch, Bernardo Duarte, Isabel Caçador, João Canning-Clode,, Oleksandra Bobrova, Viggo Marteinsson, Eyjolfur Reynisson, Clara Magalhães Loureiro, Gian Marco Luna, Grazia Marina Quero, Carolin R Löscher, Anke Kremp, Marie E DeLorenzo, Lise Øvreås, Jennifer Tolman, Julie LaRoche, Antonella Penna, Marc Frischer, Timothy Davis, Barker Katherine, Christopher P Meyer, Sandra Ramos, Catarina Magalhães, Florence Jude-Lemeilleur, Ma Leopoldina Aguirre-Macedo, Shiao Wang, Nicole Poulton, Scott Jones,Rachel Collin, Jed A Fuhrman, Pascal Conan, Cecilia Alonso, Noga Stambler,, Kelly GoodwinMichael M Yakimov, Federico Baltar, Levente Bodrossy, Jodie Van De Kamp, Dion MF Frampton,Martin Ostrowski, Paul Van Ruth, Paul Malthouse, Simon Claus, Klaas Deneudt, Jonas Mortelmans,Sophie Pitois, David Wallom, Ian Salter,, Rodrigo Costa, Declan C Schroeder, Mahrous M Kandil,Valentina Amaral, Florencia Biancalana, Rafael Santana, Maria Luiza Pedrotti, Takashi Yoshida,Hiroyuki Ogata, Tim Ingleton,, Kate Munnik, Naiara Rodriguez-Ezpeleta, Veronique Berteaux-Lecellier,Patricia Wecker, Ibon Cancio, Daniel Vaulot, Christina Bienhold,, Hassan Ghazal,, Bouchra Chaouni,, Soumya Essayeh, Sara Ettamimi,, El Houcine Zaid, Noureddine Boukhatem, Abderrahim Bouali,Rajaa Chahboune,, Said Barrijal, Mohammed Timinouni, Fatima El Otmani, Mohamed Bennani,Marianna Mea, Nadezhda Todorova, Ventzislav Karamfilov, Petra ten Hoopen, Guy Cochrane,Stephane L’Haridon, Kemal Can Bizsel, Alessandro Vezzi, Federico M Lauro, Patrick Martin,Rachelle M Jensen, Jamie Hinks, Susan Gebbels, Riccardo Rosselli, Fabio De Pascale, Riccardo Schiavon,Antonina dos Santos, Emilie Villar,

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Stéphane Pesant, Bruno Cataletto, Francesca Malfatti, Ranjith Edirisinghe, Jorge A Herrera Silveira, Michele Barbier, Valentina Turk, Tinkara Tinta,Wayne J Fuller, Ilkay Salihoglu, Nedime Serakinci, Mahmut Cerkez Ergoren, Eileen Bresnan, Juan Iriberri,Paul Anders Fronth Nyhus, Edvardsen Bente, Hans Erik Karlsen, Peter N Golyshin, Josep M Gasol,Snejana Moncheva, Nina zhembekova, Zackary Johnson, Christopher David Sinigalliano,Maribeth Louise Gidley,, Adriana Zingone, Roberto Danovaro,, George Tsiamis, Melody S Clark,Ana Cristina Costa, Monia El Bour, Ana M Martins,, R Eric Collins, Anne-Lise Ducluzeau, Jonathan Martinez, Mark J Costello, Linda A Amaral-Zettler,, Jack A Gilbert,,,, Neil Davies, ,Dawn Field, and Frank Oliver Glöckner. The ocean sampling day consortium. GigaScience (2015) 4:27. DOI 10.1186/s13742-015-0066-5

Television interview for Xploration Awesome Planet, Season 3, Episode 14 “Microscopic World.” Originally aired 17 December 2016. Available on Amazon or Hulu.

PUBLISHED ABSTRACTS AND PRESENTATIONS

Fuhrman, J.A. "Accumulation of silicon by Platymonas, a marine alga with no apparent silicon requirement." 1978 Annual Meeting of the American Society of Limnology and Oceanography, Victoria, British Columbia

Fuhrman, J.A. and F. Azam. "Trophic dynamics of bacterioplankton in an enclosed marine water column: Controlled Ecosystem Population Experiment." 1979 Annual Meeting of the American Society for Microbiology, Los Angeles, California

Azam, F., J.T. Hollibaugh, J.A. Fuhrman, J.W. Ammerman, A.B. Carruthers and E.I. Mousalli. "Population dynamics of bacterioplankton in natural and polluted pelagic marine environments: studies in enclosed experimental ecosystems." Symposium on Enclosed Marine Experimental Ecosystems, Sidney, British Columbia,1980

Azam, F. and J.A. Fuhrman. "Measurements of bacterial biomass and secondary production in pelagic marine environments." Second International Symposium on Microbial Ecology, University of Warwick, U.K., 1980

Fuhrman, J.A. "Patterns of bacterioplankton production in the Southern California Bight." American Society for Microbiology Annual Meeting, Atlanta, 1982

Fuhrman, J.A. "Diel studies of bacteria, phytoplankton, and related chemical parameters in the Southern California Bight. Marine Microbial Ecology Symposium on Major Element Flow in Pelagic and Benthic Environments. Univ. of Copenhagen, Sept. 1982

Fuhrman, J.A., F. Azam, R.W. Eppley, A. Hagstrom." Diel variations of phytoplankton, bacterioplankton, and related parameters in the Southern California Bight". Winter Meeting of the American Society of Limnology and Oceanography, San Francisco, 1982 (in EOS 63:946)

Ammerman, J.W., J.A. Fuhrman, A. Hagstrom, and F. Azam. Growth characteristics of bacteria grown in "seawater cultures". Third International Symposium on Microbial Ecology, Lansing, Michigan, 1983

Fuhrman, J.A., J. Mitchell, and J. Bauer." Bacterioplankton abundance and production in Long Island Sound: Seasonal cycle and implications regarding grazing". Third International Symposium on Microbial Ecology, Lansing, Michigan, 1983

Fuhrman, J.A. "Close coupling between uptake and release of amino acids in seawater." Winter meeting of the American Society of Limnology and Oceanography, New Orleans, 1984 (in EOS 64:1095)

McManus, G.B. and J.A. Fuhrman. "Do bacteria-sized eukaryotes consume significant bacterial production?" Winter meeting of the American Society of Limnology and Oceanography, New Orleans, 1984 (in EOS 64:1095)

Fuhrman, J.A. " Are small unseen eukaryotes important in marine ecosystems?" Annual Meeting of the American Association for the Advancement of Science, New York, 1984

Fuhrman, J.A. " Biological considerations in the measurement of dissolved free amino acids in seawater: implications for chemical and microbiological studies." Winter ASLO/AGU Meeting, San Francisco, 1984 (in EOS 65:926)

McManus, G.B., J.A. Fuhrman, and D.G. Capone. "Bactivory in seawater studied with the use of inert fluorescent particles." Winter AGU/ASLO Meeting, San Francisco, 1984 (in EOS 65:926)

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Mitchell, J.G., A. Okubo, and J.A. Fuhrman. "Microzones and phycospheres, their size, nutrient concentration, and location in the water." Winter AGU/ASLO Meeting, San Francisco, 1984 (in EOS 65:925)

Ferguson, R.L., J.A. Fuhrman, and A.V. Palumbo. "Response of coastal bacterioplankton to chronic dumping of wastewater sludge." Winter AGU/ASLO Meeting, San Francisco, 1984 (in EOS 65:926)

Fuhrman, J.A., S.G. Horrigan, J.G. Mitchell, and D.G. Capone."Bacterial and algal uptake of ammonium from seawater studied with short- lived and stable isotopes of nitrogen" Winter AGU/ASLO Meeting, New Orleans, 1986 (in EOS 66:1334)

McManus, G.B. and J.A. Fuhrman. "Field estimates of bacterivory in the plume of the Chesapeake Bay." Winter AGU/ASLO Meeting, New Orleans, 1986 (in EOS 66:1314)

Malone, T.C., W.C. Boicourt, H.W. Ducklow, M.R. Roman, J.A. Fuhrman, G.B. McManus, C. Garside, and P.M. Glibert. "Hydrography and plankton dynamics in a coastal estuarine plume." Winter AGU/ASLO Meeting, New Orleans, 1986 (in EOS 66:1268)

Fuhrman, J.A. and J.A. McDaniel. "Utilization of dissolved proteins by marine bacteria". Am. Soc. for Microbiology annual meeting, Washington DC, 1986

Fuhrman, J.A. and J.A. McDaniel. "Temporal patterns of amino acid uptake and regeneration in estuarine plumes". ASLO/PSA Joint Meeting, Univ. of Rhode Island, 1986

McManus, G.B. and J.A. Fuhrman. "Chloroplasts and pigments in the ciliate Laboea strobila Lohmann". ASLO/PSA Joint Meeting, Univ. of Rhode Island, 1986

Lee, S. and J.A. Fuhrman. "Conversion of marine bacterial biovolume to carbon and nitrogen biomass". ASLO/PSA Joint Meeting, Univ. of Rhode Island, 1986

Mitchell, J.G. and J.A. Fuhrman. "A search for microzones and phycospheres in steep pycnoclines". ASLO/PSA Joint Meeting, Univ. of Rhode Island, 1986

Fuhrman, J.A. and G.B. McManus. "Control of natural bacterioplankton populations". Fourth International Congress of Ecology, Syracuse, NY, 1986

Fuhrman, J.A. and G.B. McManus. "Carbon and nitrogen exchanges among microbial populations of estuarine outflows: pathways of material flux to and from bacteria". Fourth International Symposium on Microbial Ecology, Ljubljana, Yugoslavia, 1986

Roman, M.R., H.W. Ducklow, P.M. Glibert, T.C. Malone, J.A. Fuhrman, G.B. McManus, and C. Garside. "Copepods can jump through the microbial loop." Winter AGU/ASLO Meeting, San Francisco, 1986 (in EOS 67: 968)

McManus, G.B., W.T. Peterson, and J.A. Fuhrman. "Bacterial production at a nearshore station during coastal upwelling." Winter AGU/ASLO Meeting, San Francisco, 1986, (in EOS 67: 976)

Fuhrman, J.A., S. Lee, J. Mitchell, M. Legier, G.B. McManus, and S.G. Horrigan. "Seasonal and interannual variations of bacterial and phytoplankton parameters at a temperate coastal station." Winter AGU/ASLO Meeting, San Francisco, 1986 (in EOS 67: 976)

Mitchell, J.G., J.A. Fuhrman, and A. Okubo. "A new mechanism for microscale heterogeneity of plankton." Winter AGU/ASLO Meeting, San Francisco, 1986 (in EOS 67: 977)

Ducklow, H.W., T.C. Malone, M.R. Roman, J.A. Fuhrman, and G.B. McManus. "Planktonic carbon fluxes and community structure in the outflow plume of Chesapeake Bay." Winter AGU/ASLO Meeting, San Francisco, 1986 (in EOS 67: 997)

Fuhrman, J.A., D.E. Comeau, A.M. Chan, and A. Hagstrom. "DNA extraction, genomic library development, and molecular phylogenetic characterization of mixed planktonic microbial communities." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1677)

Mitchell, J.G., J.A. Fuhrman, and A. Okubo. "The contribution of plankton to ocean density gradients." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1696)

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Glibert, P.M., J.A. Fuhrman, C. Garside, and M.R. Roman. "Comparison of inorganic and organic nitrogen fluxes in the Chesapeake Bay Plume." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1704)

McManus, G.B., J.A. Fuhrman, M.R. Roman, and H.W. Ducklow. "Growth and mortality of heterotrophic microflagellates in the Chesapeake Bay outflow plume." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1704)

Fuhrman, J.A., T. Sleeter, and C. Carlson. "Oligotrophic ocean biomass is dominated by nonphotosynthetic bacteria, even in the euphotic zone." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1729)

Suttle, C.A., and J.A. Fuhrman. "Amino acid uptake rates and turnover times in oligotrophic oceanic water near Bermuda." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1740)

Suttle, C.A., J.A. Fuhrman, and D.G. Capone. "Rapid ammonium turnover times and concentration dependent resource partitioning in planktonic communities measured using 13N." Winter AGU/ASLO Meeting, New Orleans, 1988 (in EOS 68: 1761)

Fuhrman, J.A. "Rapid turnover of dissolved organic nutrients by estuarine microorganisms." Gordon Research Conference on Estuarine Processes: Regulatory Mechanisms, Ventura CA, 1988

Lee, S., and J.A. Fuhrman. "A quantitative comparison of natural bacterioplankton population similarities by total DNA hybridization." Fall AGU/ASLO Meeting, San Francisco, 1988 (in EOS 69: 1088)

McManus, G.B., J.A. Fuhrman, and C.W. Sullivan. "Heterotrophic nanoflagellate abundance in relation to marine mesoscale features: the Cheasapeake plume and the Bering Sea ice edge." Fall AGU/ASLO Meeting, San Francisco, 1988 (in EOS 69: 1091)

Suttle, C.A., L.M. Proctor, A.M. Chan, and J.A. Fuhrman. "Do phytoplankton incorporate amino acids at ambient concentrations in Sargasso Seawater?" Fall AGU/ASLO Meeting, San Francisco, 1988 (in EOS 69: 1097)

Proctor, L.M., J.A. Fuhrman, and M.C. Ledbetter. "Marine bacteriophages and bacterial mortality." Fall AGU/ASLO Meeting, San Francisco, 1988. EOS 69: 1111-1112, http://onlinelibrary.wiley.com/doi/10.1029/88EO01175/pdf DOI: 10.1029/88EO01175

Fuhrman, J.A. and S. Lee "Natural microbial species variations studied at the DNA level." Invited talk at Fifth International Symposium on Microbial Ecology, Kyoto, Japan 1989 (published in symposium volume)

Proctor, L.M. and J.A. Fuhrman. "Bacteriophage-infected bacteria in the sea." Fifth International Symposium on Microbial Ecology, Kyoto, Japan 1989

Lee, S. and J.A. Fuhrman. "Spatial and temporal variation of species compositions of natural bacterioplankton communities studied at the DNA level." Winter AGU/ASLO Meeting, New Orleans, 1990 (in EOS 71: 186)

Proctor, L.M. and J.A. Fuhrman. "Phage replication rates and generation times of marine vibrios". Annual ASM National Meeting. Anaheim, CA. 1990

Lee, S.H. and J.A. Fuhrman. " The unique species composition of natural bacterial communities from a Bermuda coral reef lagoon studied by community DNA hybridization." Annual ASM National Meeting, Dallas, Texas. 1991

Masuchi, Y. and J.A. Fuhrman. " Natural bacterial communities in marine environments" Annual ASM National Meeting, Dallas, Texas. 1991

Fuhrman, J.A. "Bacterial production in relation to primary production." Brookhaven National Laboratory Symposium entitled Primary Productivity and Biogeochemical Bycles in the Sea. 1991.

Fuhrman, J.A. " Virus abundance and potential roles." Fifth International Workshop on the Measurement of Microbial Activities in the Carbon Cycle in Aquatic Environments. Helsingør, Denmark . 1991

Fuhrman, J.A., R.T. Noble, and R.M. Wilcox. "Fates of viruses in seawater." ASLO Aquatic Sciences Meeting. Santa Fe, New Mexico. 1992.

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Fuhrman, J.A., K. McCallum, and A.A. Davis. "Novel bacteria in marine plankton as studied by 16S rRNA genes cloned from biomass." ASM Annual Meeting. New Orleans. 1992

Noble, R.T., R.M. Wilcox, and J.A. Fuhrman. "Degradation of viruses in seawater." ASM Annual Meeting. New Orleans. 1992

Fuhrman, J.A. "Bacteriophage roles in marine food webs." International Symposium on Microbial Ecology. Barcelona, Spain. 1992.

Fuhrman, J.A. "Characterization of marine microbial communities via DNA and RNA." Microbial Loop Symposium, University of Georgia, October 1993.

Fuhrman, J.A. and A.A. Davis. "Novel prokaryotic phylogenetic groups from marine plankton" ASM Annual Meeting. Las Vegas. 1994.

Noble, R.T., R.M. Wilcox, and J.A. Fuhrman. "Viral and bacterial dynamics in Santa Monica Bay seawater mesocosms." ASM Annual Meeting. Las Vegas. 1994.

Fuhrman, J.A. "What is out there? Strange and unexpected microbes in marine plankton." Sixth International Workshop on the Measurement of Microbial Activities in the Cycling of Matter in Aquatic Environments. Konstanz, Germany. April 1995.

Fuhrman, J.A. "Viruses and protists cause similar bacterial mortality in coastal seawater." Invited seminar at University of Konstanz (Germany) Limnological Institute. April 1995.

Nobel, R.T. and J.A. Fuhrman. "Dynamics of the marine microbial food web in ocean mesocosms." ASM Annual Meeting. Washington, D.C. May 1995.

Davis, A.A. and J.A. Fuhrman. " Rapid screening for novel organisms by RNA colony blot." ASM Annual Meeting. Washington, D.C. May 1995.

Fuhrman, J.A. "Diversity of marine microbes." Invited speaker at the Gordon Research Conference on Applied and Environmental Microbiology. New Hampton School, New Hampshire. July 1995. Noble, R.T. and J.A. Fuhrman."Anthropogenic influences on the microbiology of the urban ocean of Los Angeles. AGU/ASLO Ocean Sciences Meeting, San Diego, February 1996. In EOS 76(3): OS14

Fuhrman, J.A. and A.A. Davis. " Microbial biodiversity of antarctic and coral reef plankton by 16S rRNA cloning and sequencing. AGU/ASLO Ocean Sciences Meeting, San Diego, February 1996. In EOS 76(3): OS160-OS161

Fuhrman, J.A. "What is out there? Biodiversity patterns in marine plankton." Scripps Institution of Oceanography Marine Biology Seminar. 16 February 1996

Fuhrman, J.A. "Microbes in the Sea: Changing Paradigms." Lecture at Princeton University, 11 March 1996

Noble, R.T. and J.A. Fuhrman. “Comparison between decay of infectivity and macromolecular fates of viruses in Santa Monica Bay.” ASM Annual Meeting, New Orleans, May 1996

Karner, M. and J.A. Fuhrman. “Fluorescent 16S rRNA probe marine bacterial counts match or exceed counts obtained by autoradiography, nucleoid staining, or 5-Cyano-2,3-ditolyl tetrazolium chloride staining.” ASM Annual Meeting, New Orleans, May 1996

Fuhrman, J.A. “Paradigms Lost: Changes in Our View of Marine Microbes” Seminar given at California Institute of Technology, 20 November 1996

Fuhrman, J.A. “Two decades of change in marine microbiology” Seminar given at Texas A&M University, 21 April 1997

Fuhrman, J.A. “Changing views of marine prokaryotes” Seminar given at UC Santa Cruz, May 1997

Noble, R.T. and J.A. Fuhrman, "Breakdown and Microbial Uptake of Marine Viruses" ASM National Meeting, Miami Beach, FL, May 1997. Fuhrman, J.A. “Molecular approaches in the study of marine microbial diversity” Symposium at Royal Dutch Academy of Sciences, Amsterdam, 11 June 1997

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Fuhrman, J.A. “Changing views of marine microbes” Seminar given at the Netherlands Institute for Sea Research, Texel, 12 June 1997.

Fuhrman, J.A. “Changing ideas in marine microbiology” Seminar given at the Marine Biology Laboratory of Trieste University, Trieste, Italy, 1 July 1997.

Fuhrman, J.A. “Changing views of aquatic prokaryotes” Symposium at the Max Planck Institute for Terrestrial Microbiology, Marburg, Germany, 2 July 1997.

Fuhrman, J.A. “Marine microbes in a global context.” Seminar given at the Jet Propulsion Lab, California Institute of Technology, Pasadena, 22 July 1997

Noble, R.T., J.G. Griffith, and J. A. Fuhrman, "Detection of human pathogenic viruses in Santa Monica Bay seawater: Any correlation to presence and numbers of fecal coliforms?" Conference: Coastal Zone 1997. Boston, MA, 24 July 1997.

Fuhrman, J.A., “Shifting paradigms about marine microorganisms.” Seminar given at the Institute of Marine Sciences, Barcelona, Spain, 2 October 1997.

Fuhrman, J.A. “Our changing view of marine microbes.” Seminar given at University of Murcia, Spain, 6 October 1997.

Fuhrman, J.A. “Qualitative and quantitative analysis of marine microbial diversity.” Keynote address given at University of Georgia, 8 December 1997.

Fuhrman, J.A. “Changing perspectives of marine microbes.” Seminar given at Georgia Institute of Technology, 27 January 1998.

Fuhrman, J.A. and R.T. Noble “Potential Roles of Viruses in Regulating Marine Carbon Flux.” ASLO/AGU Ocean Sciences Meeting, San Diego, February 1998

Ouverney, C.C. and J.A. Fuhrman “Determining in Situ Nutrient Uptake by Specific Prokaryotic Groups in a Mixed Marine Community.” ASLO/AGU Ocean Sciences Meeting, San Diego, February 1998

Noble, R.T. and J.A. Fuhrman. “Estimates of Production and Loss of Viruses in Seawater From Tracer Studies” ASLO/AGU Ocean Sciences Meeting, San Diego, February 1998

Thingstad, T.F., G.-A. Fonnes, C. Marrasé, F.Peters, J. Gasol , M. Sala, M.Vidal, U.L. Zweifel, F. Rassoulzadegan, and J.A. Fuhrman. “Microbial affinity for orthophosphate studied in microcosms with natural plankton communities from western Mediterranean.” Sixth European Marine Microbiology Symposium, Sitges, Spain, May 1998

Fuhrman, J.A. and R.T. Noble. “Causative agents of bacterial mortality and the consequences to marine food webs.” Eighth International Symposium on Microbial Ecology. Halifax, Canada, August 1998

Noble, R.T. and J.A. Fuhrman. “Estimates of virus production and removal rates: implications to bacterial mortality in the marine environment.” Eighth International Symposium on Microbial Ecology. Halifax, Canada, August 1998

Fuhrman, J.A. “Biodiversity.” Keynote address at Salzau Workshop of Kiel Institut fur Meereskunde, Salzau, Germany, September 1998

Fuhrman, J.A. “Changing views of marine microbes.” Seminar given at Kiel Institute fur Meereskunde, Kiel, Germany, September 1998.

Rossi, P., M. Karner, C. Ouverney, J.A. Fuhrman, M. Aragno. “Mise en évidence de la biodiversité microbienne en milieux océaniques à l’aide de sondes oligonucléotides fluorescentes et de l’hydridation in situ de l’ARN 16S.” Atelier du Riseau Biodiversiti et Ecologie Microbienne, Aussois, France, December 1998 Fuhrman, J.A. “Changing perspectives on marine microorganisms” Seminar given at University of Paris VI, December 1998

Fuhrman, J.A. “Which microbes are active and what kinds are they?” American Society of Limnology and Oceanography Meeting, Santa Fe, New Mexico, February 1999

Ouverney, C.C. and J.A. Fuhrman “Simultaneous in situ measurements of specific nutrient uptake by specific marine bacterioplankton cells. ”American Society of Limnology and Oceanography Meeting, Santa Fe, New Mexico, February 1999

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Carr, L., C.C. Ouverney, and J.A. Fuhrman “Comparisons of bacterial and archaeal concentrations between nearshore and open ocean depth profiles off Southern California.”American Society of Limnology and Oceanography Meeting, Santa Fe, New Mexico, February 1999

Noble, R.T., J.A. Fuhrman, and A. Michaels “Detection of indicator viruses in effluent-impacted coastal waters of the Southern California Bight.”American Society of Limnology and Oceanography Meeting, Santa Fe, New Mexico, February 1999

Fuhrman, J.A. and C.C. Ouverney. “Marine bacterioplankton identification and activity assays with 16S rRNA probes and microautoradiography.” 143rd Meeting of the Society for General Microbiology, University of Edinburgh, Scotland, April 1999

Noble, R.T. and J.A. Fuhrman. “Detection of human enteric viruses in the Southern California Bight: any relation to bacteriological water quality?” Coastal Zone Meeting, San Diego, July 1999

Fuhrman, J.A. “Microbial Contamination.” National Research Council Workshop on Opportunities for Advancement of Environmental Marine Biotechnology. Washington, D.C. October 1999

Fuhrman, J.A. “Virus-caused mortality of marine microbes.” Invited. American Geophysical Union/ American Society of Limnology and Oceanography Meeting. San Antonio. January 2000.

Fuhrman, J.A. “Breaking open the black box of marine prokaryotes.” Invited. Microbial Genomics and Molecular Ecology Workshop of the Natural Environment Research Council, Warwick University, U.K. May 2000

Fuhrman, J.A. “Marine viruses and their biogeochemical and ecological effects.” Invited. Microbial Genomics and Molecular Ecology Workshop of the Natural Environment Research Council, Warwick University, U.K. May 2000

Griffith, J.F., J.A. Fuhrman, and A.A. Davis. “Temporal variation in bacterial and viral communities.” American Society for Microbiology Annual Meeting, Los Angeles, May, 2000

Fuhrman, J.A. “ Marine viruses and their ecological and biogeochemical effects.” Steinbach Scholar lecture, Woods Hole Oceanographic Institution, July 2000

Fuhrman, J.A. “Breaking open the “black box” of marine prokaryotes.” Steinbach Scholar lecture, Woods Hole Oceanographic Institution, July 2000

Fuhrman, J.A. “Bacterial diversity patterns and viruses in marine plankton.” Food Web Conference, Kyoto Japan, December 2000

Griffith, J.F. A.A. Davis, and J.A. Fuhrman “Relating prokaryotic and viral diversity in marine waters.” American Society for Limnology and Oceanography Aquatic Sciences Meeting, Albuquerque, February 2001

Fuhrman, J.A. “Two decades of change in marine microbiology.” Seminar at University of Pennsylvania, May 2001

Fuhrman, J.A. “Community structure and function in prokaryotic marine plankton.” 9th International Symposium on Microbial Ecology, Amsterdam, August 2001

Griffith, J.F. and J.A. Fuhrman. “Temporal change in marine prokaryotic and viral diversity in nutrient amended mesocosms.” 9th International Symposium on Microbial Ecology, Amsterdam, August 2001

Fuhrman, J.A. “Marine viruses and bacterial diversity - are they connected?” Society for General Microbiology Annual Meeting, Univ. of East Anglia, UK, September 2001

Fuhrman, J.A. “Two decades of change in marine microbiology.” Opening lecture, Annual Meeting of the Spanish Society for Microbiology, Alicante, Spain. September 2001.

Fuhrman, J.A. “ Activity and diversity of marine microorganisms.” Seminar at Scripps Institution of Oceanography, October 2001

Fuhrman, J.A., I. Hewson, and M. Schwalbach. “Viral and Bacterial Community Shifts at an Ocean Time Series Station.” AGU/ASLO Meeting, Honolulu, February 2002 Station

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Fuhrman, J.A. and M. Schwalbach “Interactions between genomes of bacteria and bacteriophages in an environmental context.” Outcomes of Genome-Genome Interactions Workshop, NASA, Woods Hole, May 2002

Fuhrman, J.A. “Bacteria and viruses in Southern California waters.” Santa Monica Bay Science Workshop, Los Angeles, May 2002.

Fuhrman, J.A., I. Hewson, and M. Schwalbach. “Relationships between viral and bacterial community composition in marine plankton. Inernational Union of Microbiological Societies Meeting, Paris, August 2002.

Fuhrman, J., D. Caron, M. Brown, P. Countway, I. Hewson, X. Hernandez, X. Liang, M. Schwalbach, A. Schnetzer, R. Schaffner, , and M. Travao. “The USC Microbial Observatory” NSF Workshop on Microbial Observatories and Life in Extreme Environments, Arlington, Virginia, September 2002.

Fuhrman, J. “ Two decades of change in marine microbiology” Seminar at UC Santa Barbara, January 2003 Fuhrman, J. “Marine bacterial diversity: dynamics and controlling factors “ Seminar at University of British Columbia, January 2003

Hewson, I, And J. Fuhrman “Virus effects on bacterial communities in shallow coastal benthos.” Presented at ASLO Ocean Sciences Meeting, Salt Lake City. February 2003

Schwalbach, M.S.. I Hewson, and J. Fuhrman. “Aerobic anoxygenic phototrophs: quantification in California coastal waters and possible ecological roles in marine bacterioplankton.” Presented at ASLO Ocean Sciences Meeting, Salt Lake City. February 2003 Fuhrman, J. “Changing paradigms in marine microbiology” Seminar at Oceanographic Observatory, Villefranche-sur-Mer, France, February 2003

Fuhrman, J. “Marine viruses and their effects on bacteria” Seminar at University of Barcelona, April 2003

Fuhrman, J. “Patterns of narine bacterial and viral diversity” Seminar at University of Paris VI Marine station in Banyuls, France. April 2003

Fuhrman, J. “Two decades of change in marine microbiology” Seminar at University of Barcelona, April 2003.

Fuhrman, J. “Human pathogens in the marine environment” Invited talk at The Oceanography Society National Meeting , New Orleans June 2003

Fuhrman, J. "How Marine Biology Concerns Us All", Lecture at Temple Beth Hillel, Studio City CA June 2003

Featured interview on ‘The Osgood File’ (CBS Radio), August 2003 wcbs880.com/osgood/osgood_story_216112839.htm

Fuhrman, J. “Our changing view of marine microbiology” Seminar at Scripps Institution of Oceanography, UCSD, September 2003

Fuhrman, J. “Our changing view of marine microbiology” Seminar at Cornell University, October 2003

Fuhrman, J., I. Hewson, M. Schwalbach, M.Brown. “Temporal and geographic patterns of marine bacterial community composition” Presented at ASLO Ocean Sciences Meeting, Honolulu, Febuary 2004

Brown, M.V., I. Hewson, J. Fuhrman. “Tracking temporal patterns of microbial biodiversity, microdiversity and community structure at various depths in the San Pedro Channel, California.” Presented at ASLO Ocean Sciences Meeting, Honolulu, Febuary 2004

Steele, J. A., Hewson, I., Capone, D. G., Fuhrman, J. A. “ Effects of inorganic iron, phosphorus, and dust addition on prokaryote community dynamics in the North Pacific subtropical gyre.” Presented at ASLO Ocean Sciences Meeting, Honolulu, Febuary 2004

Hewson, I., JA. Steele, DG. Capone, JA. Fuhrman . “Viral influence on bacterial communities in the North Pacific Gyre” Presented at ASLO Ocean Sciences Meeting, Honolulu, Febuary 2004

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Govil, S., Hewson, I., Capone, D.,Carpenter, E., Fuhrman, J.”Cyanophage may play important roles in Trichodesmium spp. ecology in the oligotrophic ocean..” Presented at ASLO Ocean Sciences Meeting, Honolulu, Febuary 2004

Fuhrman, J.S., I. Hewson, M Brown, M Schwalbach, J. Steele, A Patel. “ Microbial biogeography and temporal patterns in marine plankton.” Presented at Tenth International Symposium on Microbial Ecology, Cancun. August 2004.

Hewson, I., T.E. Gunderson, D.G. Capone, and J.A. Fuhrman, Viral effects on diazotrophic bacteria in the oligotrophic oceans.” Presented at Tenth International Symposium on Microbial Ecology, Cancun. August 2004.

Fuhrman, J..A. “Evolving ideas on marine microbial systems, from the microbial loop and viruses to genomics, biogeography, and global change.” Presented at Tenth International Symposium on Microbial Ecology, Cancun. August 2004.

Schwalbach, M.S. and J.A. Fuhrman. “Global QPCR survey of planktonic aerobic anoxygenic phototrophs and insights from light manipulation experiments.” Presented at Tenth International Symposium on Microbial Ecology, Cancun. August 2004.

Fuhrman, J.A. “ Changing views of marine microbes.” Invited seminar at University of Miami (FL). November 2004

Fuhrman, J.A. “Human pathogens in the marine environment.” Invited workshop pressentation at the Pew Fellows Annual Meeting, Key Largo, Florida. November 2004.

Fuhrman, J.A., I. Hewson, M. Schwalbach. "Interactions Between Marine Viral and Bacterial Community Composition." Invited presentation at First European Workshop on Aquatic Phage Ecology, Thonon-les-Bains, France, January 2005.

Schwalbach, M.S. and J.A Fuhrman. Factors controlling bacterial phototrophs in seawater. ASLO Aquatic Sciences Meeting, Salt Lake City. February 2005

Fuhrman, J.A., I. Hewson, M. Schwalbach, J. Steele, M. Brown, and A. Patel. Biogeographic patterns in marine bacterioplankton. ASLO Aquatic Sciences Meeting, Salt Lake City. February 2005

Steele. J.A., A Patel, I. Hewson, and J.A. Fuhrman. “Stability in marine bacterial communities on hour-day time scales and kilometer spatial scales in the San Pedro Basin, California.” ASLO Aquatic Sciences Meeting, Salt Lake City. February 2005

Fuhrman, J.A. “Evolving ideas on marine microbial systems, from the microbial loop and viruses to genomics, biogeography, and global change.” Plenary Lecture at Dutch Society for Microbiology, Arnhem, The Netherlands. April 2005

Fuhrman, J.A. "The power of molecular genetics in biological oceanography." Invited Plenary Lecture, Annual Meeting of The Oceanography Society at UNESCO, Paris, June 2005.

Fuhrman, J.A. "Microbial genomics, biogeography and global change" Invited talk at the International Union of Microbiological Societies Joint Meeting, San Francisco, July 2005.

Fuhrman, J.A. " Cyanophages and oceanic cyanobacteria." Invited talk at the Marine Cyanobacteria Symposium, Wenner Gren Foundation, Stockholm, Sweden. August 2005.

Fuhrman, J.A. “ Changing perspectives on marine microbes.” Invited seminar at Stanford University, January 2006

Fuhrman, J.A. “New ideas on microbes in the sea.” Invited seminar at Jet Propulsion Laboratory, January 2006.

Caron, D.A. and J.A. Fuhrman. “Ecological Insights from Studies of Microbial Diversity: Examples from a Microbial Observatory.” ASLO/AGU/TOS Ocean Sciences Meeting, Honolulu, February 2006

Fuhrman, J.A. “Metagenomics is not the only fruit.” Invited speaker, Society for General Microbiology workshop on Environmental Genomics. Warwick, U.K., April 2006.

Fuhrman, J.A. “Changing perspectives on marine microbes.” Invited Seminar at Monterey Bay Aquarium Research Institute. April 2006.

Fuhrman, J.A. “Archaea and 'New' Phototrophs in the Sea: Just What Are They Up To?” Invited Symposium, American Society for Microbiology annual meeting, Orlando, Florida. May 2006

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Fuhrman, J.A. “Marine microbes keep surprising us.” Hutchinson Award lecture, Americal Society for Limnology and Oceanography annual meeting, Victoria, British Columbia, June 2006.

Fuhrman, J.A. “Phototrophy and other interesting functional genes from seawater” Invited seminar speaker, Catalina Geobiology Course Symposium on Functional Genes, July 2006

Fuhrman, J.A. “Top down and bottom up controls of marine bacterial abundance and diversity.” Invited speaker, Gordon Conference on Marine Microbes, Biddeford, Maine, July 2006

Fuhrman, J.A. “ How do viruses influence of marine bacterial assemblage structure?” Invited speaker, Int. Soc. For Microbial Ecology, Vienna Austria, August 2006

Patel, A. and J.A. Fuhrman. Water column and sediment marine biofilms: a temporal succession and comparative study of microbial diversity using DNA fingerprinting. Poster. Int. Soc. For Microbial Ecology, Vienna Austria, August 2006

Böer, S.I., A. Ramette, J.E. van Beusekom, J.A. Fuhrman, and A. Boetius. Linking spatial and seasonal variations in bacterial activities and community structure: a case study in coastal sandy sediments. Poster. Int. Soc. For Microbial Ecology, Vienna Austria, August 2006

Fuhrman, J.A. Metagenomics in the study of biogeochemistry. Invited presentation at Metagenomics 2006 conference, La Jolla CA, October 2006.

Steele, J. A., Countway, P. D., Schwalbach, M. S., Rose, J. M., Vigil, P. D., O’Brien, S. G., Hewson, I., Brown, M. V., Jones, A. C., Patel, A., Ruan, Q., Huang, J., Sun, F., Caron, D. A., Fuhrman, J. A.: Bacterial and protistan cooccurrence and interactions at the San Pedro Ocean Time Series in the San Pedro Channel, California. Am. Soc. Limnol. Oceanogr. Meeting, Santa Fe NM, February 2007

Böer, S. I., Ramette, A., Volkenborn, N., Fuhrman, J.A., Boetius, A.: Does bioturbation influence bacterial community structure in intertidal sands? Results from a large scale lugworm exclusion experiment in the German Wadden Sea. Am. Soc. Limnol. Oceanogr. Meeting, Santa Fe NM, February 2007

Steele, J. A., Countway, P. D., Schwalbach, M. S., Rose, J. M., Vigil, P. D., O’Brien, S. G., Hewson, I., Brown, M. V., Jones, A. C., Patel, A., Kakajiwala, M., Chow, C., Ruan, Q., Huang, J., Sun, F., Caron, D. A., Fuhrman, J. A.: Bacterial and protistan interactions at the USC Microbial Observatory. NSF Microbial Observatory Workshop, Washington DC March 2007.

Fuhrman, J.A. “From viruses to protists - drawing together the diffuse strands of marine microbial ecology.” Presentation at the “Sequencing the Seas” Symposium, Royal Society, London April, 2007.

Steele, Joshua A., Peter D Countway, Michael S Schwalbach, Julie M Rose, Patrick D Vigil, Sheila G O'Brien, Ian Hewson, Mark V Brown, Adriane C Jones, Anand Patel, Quansong Ruan, Jerry Huang, Mahira Z Kakajiwala, Cheryl-Emiliane T Chow, Fengzhu Sun, Shahid Naeem, David A Caron, Jed A Fuhrman. Bacterial and protistan interactions at the USC Microbial Observatory. Poster Presentation at the “Sequencing the Seas” Symposium, Royal Society, London April, 2007.

Fuhrman, J.A. and J. M. Beman. Marine Crenarchaea: discovery, diversity, distribution, and activity. Divisional Lecture, American Society of Microbiology Annual Meeting, Toronto, May 2007.

Fuhrman, J.A. Marine Metagenomics: discoveries and future directions. Keynote address, Metagenomics 2007 Conference, UC San Diego, July 2007.

Fuhrman, J.A. Changing perspectives on marine microbes. Hopkins Marine Laboratory, Stanford University, July 2007.

Fuhrman, J.A. Linking microbial diversity to function. Keynote Lecture, 10th Symposium on Aquatic Microbial Ecology, Faro Portugal Sept. 2007

Bertics, V. J., Sohm, J. A., Treude, T., Chow, C. T., Fuhrman, J. A., Capone, D. G., Ziebis, W. Linked nitrogen fixation and sulfate reduction in a benthic system heavily influenced by bioturbation. ASLO/AGU Ocean Sciences Meeting Orlando March 2008

Chow, C. T., Steele, J. A., Patel, A., Kakajiwala, M., Sachdeva, R., Fuhrman, J. A. Connecting bacterial identity with function by response to enrichment. ASLO/AGU Ocean Sciences Meeting Orlando March 2008

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Böer, S. I., Ramette, A., Hedtkamp, S. I., Beusekom van, J., Fuhrman, J. A., Boetius, A.. Which factors shape bacterial community structure in coastal permeable sediments? ASLO/AGU Ocean Sciences Meeting Orlando March 2008

Steele, J. A., Countway, P. D., Huang, J., Jones, A. C., Beman, J. M., Schwalbach, M. S., Vigil, P. D., Rose, J. M., O’Brien, S. G., Hewson, I., Brown, M. V., Patel, A., Ruan, Q., Sun, F., Caron, D. A., Fuhrman, J. A., Ecological relationships of marine microbes described through interaction networks at the San Pedro Channel, California. ASLO/AGU Ocean Sciences Meeting Orlando March 2008

Romero, I.C., J.A. Fuhrman, M .Jacobsen, M.L. Fogel, J.A. Steele, D.G. Capone. Interactions between diazotrophic bacteria and mangrove roots under different nutrient conditions. ASLO/AGU Ocean Sciences Meeting Orlando March 2008

Fuhrman, J.A. Combining marine metagenomics and spatial/temporal patterns to infer system function. Invited at: Genomes to Systems Conference (The Consortium for Post-Genome Science). Manchester, UK. March 2008

Fuhrman, J.A. Marine microbial diversity and its impact on global biogeochemical cycles. Invited at: Colloquium on “ Assessing marine microbial diversity: problems and solutions.” Royal Academy of Arts and Sciences, Amsterdam, May 2008.

Fuhrman, J.A. Changing views of marine microbes. Hopkins Marine Laboratory, Stanford University, June 2008. Marine Microbiology Course lecture.

Fuhrman, J.A. Marine viruses: historical perspective and future directions. Invited Keynote Speaker. Aquatic Virus Workshop, Vancouver BC July 2008. Fuhrman J.A. Taking the long view: time-series data for understanding microbial communitiesInvited Workshop speaker. Twelfth Annual Meeting of the International Society for Microbial Ecology. Cairns Australia, August 2008.nd microbial community ecology in the seaBeman, J. M., Joshua Steele, and Jed Fuhrman.Variability of marine Crenarchaeota in relation to ammonia oxidation rates and abundant marine bacterial lineages: implications for nitrogen biogeochemistry and microbial community ecology in the sea. Twelfth Annual Meeting of the International Society for Microbial Ecology. Cairns Australia, August 2008.

Chow, C.T., Anand Patel, J. Michael Beman, and Jed A. Fuhrman. Bacterial and Archaeal Community Shifts as a Response to Ammonium and Nitrite Enrichments in Seawater. Twelfth Annual Meeting of the International Society for Microbial Ecology. Cairns Australia, August 2008.

Fuhrman, J.A. Joshua Steele, Peter Countway, David Caron, Fengzhu Sun. Inferring marine microbial system function from temporal and spatial patterns. Invited Talk. Twelfth Annual Meeting of the International Society for Microbial Ecology. Cairns Australia, August 2008.

Patel, A. and J.A. Fuhrman. Exploring phage diversity in marine biofilms using major capsid protein as a phylogenetic marker. Twelfth Annual Meeting of the International Society for Microbial Ecology. Cairns Australia, August 2008.

Fuhrman, J.A., Joshua Steele, Peter Countway, David Caron, Fengzhu Sun. Changing perspectives on marine microbes: inferring system function from pattern. Invited talk, SCOPE Workshop on Microbial Environmental Genomics, Changsha, China September 2008

Fuhrman, J.A. Making the Leap from DNA to Microbial Community Association Networks . Invited Seminar, Scripps Institution of Oceanography, February 2009

Fuhrman, J.A. Association network analysis shows potential marine food web interactions. Invited Speaker, American Society for Limnology and Oceanography Ocean Sciences Meeting, Nice, February 2009.

Fuhrman, J.A. Patterns in Marine Microbes and Microbial Association Networks . Invited Lecture, University of South Florida, March 2009

Fuhrman, J.A. Changing views of marine microbes (Marine Microbiology Course lecture). Hopkins Marine Laboratory, Stanford University, June 2009.

Fuhrman, J.A. Practical implications of microbial community structure. Invited talk, Gordon Research Conference on Microbial Population Biology, Andover NH, July 2009

Fuhrman JA. Networks of microbes. Invited talk, ICoMM Workshop, Amsterdam. September 2009

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Fuhrman, J. A. Roles of viruses in marine systems. Invited seminar at Caltech. Feb 2010

Chow, C.E. , J.A. Steele, R. Sachdeva, J. Cram, J.A. Fuhrman. Viral connections in a diverse microbial community. ASLO Meeting Portland OR February 2010

Fuhrman, J.A., B. H. Jones, J. Griffith, R. Noble, J. A. Steele. Microbial contamination of the coastal zone: experience linking research to policy (Invited). ASLO Meeting Portland OR, February 2010 

Fuhrman, JA. Marine bacterioplankton diversity along spatial and temporal gradients. Invited talk, Society for General Microbiology, Edinburgh, Scotland, March 2010.

Fuhrman, JA. Changing perspectives on marine microbes. Plenary Lecture, Southern California Academy of Sciences Annual Meeting. Cal State Univ. Los Angeles, May 2010.

Fuhrman, JA. Oceans of Crenarchaeota. Invited Lecture, American Society for Microbiology Annual Meeting, San Diego, May 2010

Fuhrman, JA. Marine microbes, the nitrogen cycle, and global change. Invited Lecture (last minute replacement for ill colleague), American Society for Microbiology Annual Meeting, San Diego, May 2010

Fuhrman, JA and J Steele. Roseobacters in the context of the broader microbial community. Invited Lecture at a symposium entitled, “Ecology, Physiology, and Molecular Biology of the Roseobacter clade” Hanse Institute for Advanced Studies, Delmhorst Germany. June 1010.

Fuhrman, JA. Changing perspectives on marine microbes. Invited Seminar, Oldenburg Universty. June 2010.

Fuhrman, JA. A long term perspective on marine microbes. Invited Seminar, Max Planck Institute for Marine Microbiology, Bremen Germany. June 2010.

Fuhrman, JA. Marine Plankton Microbes. Invited Lecture (Marine Microbiology Course), Hopkins Marine Station of Stanford University. July 2010.

Steele , Joshua A., Peter D. Countway, Li Xia, Patrick D. Vigil, J. Michael Beman, Diane Y.Kim, Cheryl-Emiliane T. Chow, Rohan Sachdeva, Adriane C. Jones, Michael S. Schwalbach, Julie M. Rose, Ian Hewson, Anand Patel, Fengzhu Sun, David A. Caron, Jed A. FuhrmanThree-domain marine microbial association networks reveal ecological linkages. Poster presentation, Gordon Research Conference, Tilton NH. July 2010.

Chow, C, Sachdeva, R, Fuhrman, J. Monthly variation of marine viral communities at the san pedro ocean time series. ISME Meeting, Seattle WA, August 2010

Cram, J, Sachadeva, R, Steele, J, Capone, D, Fuhrman, J. Microbial associations across the North Pacific gyre and Amazon river plume. ISME Meeting, Seattle WA, August 2010

Sachdeva, R, Shaw, A, Fuhrman, J, Horner-Devine, M. Temporal scaling of marine bacterioplankton assemblage composition . ISME Meeting, Seattle WA, August 2010

Steele, J, Xia, L, Amaral-Zettler, L ,Mark Welch, D, Gilbert, J, Neal, P, Huse, S, Zinger, L, Pommier,T, Field, D, Caron, D., Herndl, G, Sogin, M, Sun, F, Fuhrman, J. Microbial-environmental networks among bacteria and archaea from the ICOMM database. ISME Meeting, Seattle WA, August 2010

Patel, A , Fuhrman J., Ziebis, W. Bacterial and viral colonizers of native carbonate minerals at deep-sea methane seeps. ISME Meeting, Seattle WA, August 2010

Zinger, L, Amaral-Zettler, L, Fuhrman, J, Herndl, G, Horner-Devine, M, Huse, S, Mark Welch, D, Martiny, J, Neal, P, Pommier, T, Sogin, M, Boetius, A, Ramette, A. Global-scale analysis of water column and sediment bacterial communities indicates contrasting beta-diversity patterns. ISME Meeting, Seattle WA, August 2010

Fuhrman, J, Steele, J, Xia, L, Amaral-Zettler, L ,Mark Welch, D, Gilbert, J, Neal, P, Huse, S, Zinger, L, Pommier,T, Field, D, Caron, D., Herndl, G, Sogin, M, Sun, F. Temporal patterns and association networks in a time-series from the ICOMM database. Invited talk, ICOMM Satellite Meeting, Seattle WA Aug 2010

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Fuhrman, J. A., J. A. Steele, L. A. Amaral-Zettler, D. B. Mark Welch, P. Neal, S. M. Huse, A. Boetius, A. Ramette, L. Zinger, G. Herndl, T. Pommier, C. Pedrós-Alió, L. Xia, F. Sun, M. L. Sogin. Global Patterns of Marine Microbial Communities. Presented at Census of Marine Life Conference, London, October 2010.

Fuhrman, J.A. Integrating molecular and environmental data to evaluate community patterns. Invited talk. Keystone Symposium: Microbial communities as drivers of ecosystem complexity. Breckenridge, Colorado. March 2011

Fuhrman, J.A. Long-Term perspective on marine microbes. Invited Seminar UC Irvine. April 2011.

Needham, D. M., C. E. Chow, R. Sachdeva, J. A. Cram, A. Parada, J. A. Fuhrman. Day-to-day Dynamics of Bacterial and Myoviral Communities of the Surface Ocean. Am. Soc. for Microbiology Annual Meeting, New Orleans May 2011.

Fuhrman, J.A. The aquatic EMP: Building on the most characterized environmental ecosystem. Invited talk. First International Earth Microbiome Project Conference. Shenzhen China, June 2011.

Fuhrman, J.A., S. Weisberg, J. Griffith, R. Noble. Invited presentation. Urban Stresses on the Coastal Ocean in Los Angeles: The Microbial Component. Meeting of the Ocean Studies Board of the National Academy of Sciences, Beckman Center, Irvine CA, July 2011.

Fuhrman, J., Griffith, J., Noble, R., Sirimanne,R., and Witheridge,A. "Southern California Coastal Water Research Project A Microbial Source Identification Title: Project in the Lower San Luis Rey River and the Next Steps toward the Bacteria Phase I TMDL in Region 9," California Stormwater Quality Association (CASQA) Stormwater Conference, Monterey Bay, CA, Hyatt Regency 2011.

Fuhrman, J.A. Aquatic Microbial Ecology: where have we been and where might we be going? Keynote Address (invited), Society for Aquatic Microbial Ecology Meeting, Rostock, Germany, August 2011

Needham DM, Chow CE, Sachdeva R, Cram JA, Parada A, Fuhrman JA. "Day-to-Day dynamics of bacterial and myoviral communities of the surface ocean". Oral presentation at 6th Aquatic Virus Workshop at the Royal Netherlands Institute of Sea Research in Den Burg (Texel), The Netherlands. October 31, 2011. 

Chow, CET and JA Fuhrman Seasonality and Monthly Dynamics of Marine Myovirus Communities by Capsid Gene Sequences at the San Pedro Ocean Time-Series. Talk presented at the 6th Aquatic Virus Workshop, Texel, The Netherlands, November 2011.

Chow, CET, R Sachdeva, JA Cram, and JA Fuhrman. Viral control of autotrophic vs. heterotrophic bacteria in the surface ocean: ecological networks linking viruses and bacteria. Talk presented at ASLO AGU Ocean Sciences Meeting, Salt Lake City Feb 2012

Fuhrman, JA. Three decades of discovery in marine microbiology. Van Niel Lecture, Hopkins Marine Station of Stanford University, May 2012

Fuhrman, JA. Time series of diversity patterns: what do they tell us? (Invited Talk) American Society for Microbiology Annual Meeting, San Francisco, June 2012

Fuhrman, JA. Omics should supplement, not replace, traditional microbiological oceanographic approaches. Invited. Gordon Research Conference on Marine Microbes, Barga Italy, June 2012

Gomez-Consarnau, L. L. Cutter, J.A. Cram, D. Needham, G Salazar, J.A. Fuhrman. Diel cycles of dissolved B-vitamins in the coastal ocean. Poster, Gordon Research Conference on Marine Microbes, Barga Italy, June 2012

Cram, J., R. Sachdeva, C. Chow, L. Xia, J, Steele, D. Needham, A. Parada, J. Fuhrman. Bacterial community variability across ten years and five depths at the San Pedro Ocean Time Series. Poster. ISME 14, Copenhagen, August 2012.

Fuhrman, J.A. Three-domain (+ virus) microbial association networks at the San Pedro Ocean Time series. Invited. ISME 14, Copenhagen, August 2012.

Gomez-Consarnau, L. L. Cutter, J.A. Cram, D. Needham, G Salazar, J.A. Fuhrman. Diel cycles of dissolved B-vitamins in the coastal ocean. Poster, ISME 14, Copenhagen, August 2012.

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Fuhrman, J.A. Three decades of discovery in marine microbial ecology. Invited Lecture, University of Paris and CNRS Oceanological Observatory, Banyuls-sur-mer, France. September 2012.

Fuhrman, J.A. Temporal and spatial patterns of microbial communities: what do they tell us about genomes? Invited Plenary talk, Cross Disciplinary Genomics Symposium, University of Pierre and Marie Curie, Paris, France. October 2012.

Fuhrman, J.A. Three-domain (+ virus) microbial association networks from time series. CSIC Barcelona, Spain, November 2012.

Fuhrman, J. A. Needham, D., Cram, J., Chow, C. “ Microbial Interactions and networks.” Invited talk, ASLO Ocean Sciences, New Orleans Febuary 2013.

Fuhrman, J.A. “Omics and Biogeochemical models: Challenges and promises.” Invited talk, in workshop entitled “Merging complex “-omic” data and computational ecosystem models,” sponsored by the Gordon and Betty Moore Foundation. Miami Beach FL, March 2013.

Fuhrman, J.A. “Three decades of discovery in marine microbiology.” Invited seminar, Duke University Marine Lab, April 2013.

Fuhrman, J.A. “Interactions and association networks from time series studies of microbial metagenomes.” American Society For Microbiology annual meeting Invited Lecture in Workshop on Metagenomic Approaches: Frontiers of Annotation and Assembly, Networking and Discovery. Denver, May 2013.

Cram, J. A., L. Xia, D. Needham, R. Sachdeva, C-E. Chow, A. E. Parada, J. Steele, J. A. FuhrmanInter-depth Associations Between Marine Bacterial Communities in a Ten Year Time Series. American Society For Microbiology annual meeting. Denver, May 2013.

Needham, David M., C-E. T. Chow, J. A. Cram, R. Sachdeva, A. Parada, J. A. Fuhrman Daily-to-decadal Community And Co-variation Patterns Of Marine Microbial Communities. American Society For Microbiology annual meeting. Denver, May 2013.

Parada, A. E., C. Chow, D. Needham, D. Caron, J.A. Fuhrman. Surface to Sea Floor Time Series of All Three Domains Via rRNA Tag Sequences. American Society For Microbiology annual meeting. Denver, May 2013.

Fuhrman, J.A. Analyzing microbial diversity patterns. Invited Lecture at EU-US Marine Bioinformatics Course, University of Delaware. June 2013.

Fuhrman, J.A. Microbes in aquatic habitats. Invited, Gordon Research Conference on Applied and Environmental Microbiology, Mt. Holyoke College, July 2013.

Fuhrman J.A. A long term perspective on recent discoveries in marine microbiology. Invited Lecture, Stazione Zoologica, Naples Italy, September 2013.

Needham, David M , Bella Nguyen and Jed A Fuhrman. Poster. Assessment and application of molecular methods to study in-situ bacteria and T4-like-virus dynamics. Aquatic Virus Ecology annual workshop, University of South Florida, October 2013

Mayali, X.; Gomez-Consarnau, L.; Needham, D. M.; Weber, P. K.; Fuhrman, J. Light effects on marine microbial carbon incorporation analyzed with stable isotope probing, RNA microarrays and nanosims. Ocean Sciences Meeting (ASLO AGU), Honolulu February 2014

Cram, J. A.; Parada, A. E.; Fuhrman, J. A.: Response of microbial communities to relief of top down pressure by viruses and grazers via dilution. Ocean Sciences Meeting (ASLO AGU), Honolulu February 2014

Gomez-Consarnau, L.; Gonzalez, J. M.; Riedel, T.; Wagner-Dobler, I.; Fuhrman, J. A. A transcriptome approach to understanding the function of proteorhodopsin in the marine genus Dokdonia. Ocean Sciences Meeting (ASLO AGU), Honolulu February 2014

Needham, D. M.; Sachdeva, R.; Fuhrman, J. A.: Strain level day-to-day variation of SAR11 revealed by high throughput its sequencing. Ocean Sciences Meeting (ASLO AGU), Honolulu February 2014

Fuhrman J.A. Working Group panelist on microbial association networks and on distilling ecological information from big data.Also invited seminar, “A long term perspective on recent discoveries in marine microbiology,” University of Michigan, April 2014.

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Needham DM and Fuhrman JA. Daily time-series off Southern California reveal dynamics and potential successional patterns of bacteria, archaea, protists, and viruses. Invited Oral Presentation .American Society of Limnology and Oceanography Joint Aquatic Sciences Meeting. Portland, OR. May 19-23, 2014.

Cram, Jacob, Cheryl-Emiliane T. Chow,Rohan Sachdeva, David M.Needham, Alma E. Parada, Joshua A. Steele, Jed A.Fuhrman. Seasonal and interannual dynamics of microbial heterotrophic productivity and community structure throughout the water column. Poster presentation, Gordon Research Conference on Marine Microbes, Waltham MA July 2014.

Parada, Alma, David Needham, Jed Fuhrman. Long term temporal and spatial dynamics of Euryarchaea Marine Group II and Thaumarchaea Marine Group I examined through rRNA tag sequencing. Poster presentation, Gordon Research Conference on Marine Microbes, Waltham MA July 2014.

Fuhrman JA .Towards a holistic perspective on microbial interactions. The Gordon and Betty Moore Foundation Marine Microbiology Initiative Investigator Symposium. Palo Alto CA July 2014.

Fuhrman JA. Inferring interactions among bacteria, archaea, protists, and viruses via association networks. Invited talk, International Symposium for Microbial Ecology, Seoul Korea August 2014.

Fuhrman, J.A. How Marine Viruses Entered the Mainstream: A Historical Perspective. Invited plenary lecture, Year of the Phage Conference, San Diego. January 2015.

Gomez Consarnau, L.; Sachdeva, R.; Gifford, S. M.; Cutter, L. S.; Fuhrman, J. A.; Sañudo-Wilhelmy, S. A.; Moran, M. A.: B-vitamin exchange as a central nexus of the microbial community in a coastal environment. ASLO Aquatic Sciences Meeting, Granada Spain February 2015

Parada, A. E.; Needham, D. M.; Ahlgren, N. A.; Fuhrman, J. A.: Time-series and surface to seafloor analysis of marine archaeal diversity through 16s rDNA and metagenomic sequencing. ASLO Aquatic Sciences Meeting, Granada Spain February 2015

Sieradzki, E.; Sachdeva, R.; Fichot, E.; Fuhrman, J.: Human impact on marine microbial community composition. ASLO Aquatic Sciences Meeting, Granada Spain February 2015

Needham, D. M.; Fuhrman, J. A.: Daily successional patterns of marine virus, bacteria, archaea, and protistan communities following a diatom bloom via marker genes and shotgun metagenomics. ASLO Aquatic Sciences Meeting, Granada Spain February 2015

Fuhrman, J.A. “Benefits of higher phylogenetic resolution in marine microbial ecology.” Invited talk, High Resolution Microbiome Informatics Conference. Marine Biological Lab, Woods Hole March 2015

Fuhrman, J.A.,David Needham, Alma Parada, Cheryl Chow, Nathan Ahlgren. Invited Talk, “Microbial diversity patterns and interactions at an ocean time series.” CIFAR (Canadian Institute for Advanced Research)Integrated Microbial Biodiversity Program Meeting, Victoria BC May 2015

Fuhrman, J.A. Invited Talk. Microbial Ecology in the 21st Century, current trends and predictions. The Science of Tara Oceans Symposium. Paris, June 2015

Fuhrman, J.A. David Needham, Alma Parada, Nathan Ahlgren. Invited Talk. Bacteria, Archaeal, Viral and Protistan association networks reveal many levels of connectivity in marine plankton. Jacques Monod Conference on Eco-Systems Biology, Roscoff France June 2015.

Fuhrman, J.A, David Needham, Alma Parada, Nathan Ahlgren, Lyria Berdjeb, Interactions among Bacteria, Archaea, Viruses, and Protists. Gordon and Betty Moore Foundation Marine Microbiology Initiative Investigators’ Meeting, San Francisco, July 2015.

Fuhrman, J.A. “A long term perspective on recent discoveries in marine microbiology.” Invited lecture, Harvard University, Oct 2015

Fuhrman, J.A. “A long term perspective on recent discoveries in marine microbiology.” Invited lecture, Bigelow Laboratory, Boothbay Harbor Maine, October 2015

Berdjeb, Lyria, Alma E. Parada, David M. Needham, Jed A. Fuhrman. Marine protist network revealed by high frequency temporal survey in the San Pedro Ocean Time-Series station. Symposium on a New Age of Discovery for Aquatic Microeukaryotes, Heidelberg Germany January 2016

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Dekas, Anne E., Alma Parada1,Xavier Mayali, Peter K. Weber, Jed Fuhrman, and Jennifer Pett-Ridge. Single-cell measurement of archaeal and bacterial carbon assimilation in dark Pacific Ocean waters. ASLO AGU Ocean Sciences Meeting, New Orleans February 2016

Parada, A E, N Ahlgren, J A Fuhrman. Genome and metagenome enabled analyses reveal new insight into the global biogeography and potential urea utilization in marine Thaumarchaeota. ASLO AGU Ocean Sciences Meeting, New Orleans February 2016

Ahlgren, N, A E Parada, J A Fuhrman. The complete genome of a new marine Thaumarchaea strain contains evidence of previous virus infection and a possible defense mechanism from infection. ASLO AGU Ocean Sciences Meeting, New Orleans February 2016

Gómez-Consarnau L, NM Levine, LS Cutter, D Wang, B Seegers, XA Salgado, J Arístegui, JA Fuhrman, JM Gasol and SA Sañudo-Wilhelmy. Quantifying Proteorhodopsin in the Sea. ISME Montreal Aug 2016

Needham, David M., Rohan Sachdeva, Jed A. Fuhrman. Taxon-by-taxon microdiversity and eco-genomics of phytoplankton bloom-associated marine phytoplankton, bacteria, archaea and virus populations. ISME Montreal Aug 2016

Ahlgren, Nathan, Jessie Perelman, Jed Fuhrman. Viruses control fine-scale genotypes within marine cyanobacterial ecotypes while seasonal bottom-up factors drive ecotype level community structure. ISME Montreal Aug 2016

Fuhrman, J.A., Nathan Ahlgren, Lyria Berdjeb, David Caron, Erin Fichot, Julio Cesar Ignacio Espinoza, David Needham, Alma Parada, Ella Sieradzki, Yi-Chun Yeh. Holistic marine microbial community networks and theory assessed with three-domain plus virus analysis via amplicons and ‘omics. ISME Montreal Aug 2016

Sieradzki, Ella and Jed Fuhrman. Biodegradation of polycyclic aromatic hydrocarbons in naturally occurring marine microbial communities. ISME Montreal Aug 2016

Fuhrman, J.A. From the microbial loop to ‘omics: three decades of marine microbial ecology. Lectures at Hjort Center summer course in marine microbial ecology. Bergen Norway August 2016.

Fuhrman, J.A. Advances over three decades in marine microbial ecology. Invited seminar at German National Culture Collection (DSMZ), Braunschweig, Germany. September 2016.

Fuhrman. J.A. From the microbial loop to ‘omics: three decades of marine microbial ecology. Distinguished visitor series invited seminar, Oklahoma University. September 2016

Yang Lu, Jinchi Lv, Jed Fuhrman and Fengzhu Sun. Heterogeneity Rescaling Pursuit: Enhanced Clustering and Classification in Integrative Genomics. RECOMB 2017

Jie Ren, Fengzhu Sun, Nathan A Ahlgren, Jed A Fuhrman and Yang Young Lu. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. RECOMB 2017

Connell, Paige E., Michael R. Stukel, Thomas B. Kelly, Jed A. Fuhrman, Doug E. Hammond, & David A. Caron. Microbial carbon fluxes at a coastal ocean site: an inverse ecosystem modeling analysis. ASLO Ocean Sciences, Honolulu Feb 2017

Fuhrman, Jed A, David Needham, Ella Sieradzki, Nathan Ahlgren, Julio Cesar Ignacio Espinoza, Lyria Berdjeb, Jie Ren, Yang Lu, Yi-Chun Yeh Fengzhu Sun. Assessing potential interactions among viruses, bacteria, archaea, and protists via ‘omics and high resolution time series. ASLO Ocean Sciences, Honolulu Feb 2017

Fuhrman, J.A. Three decades of advances in marine microbial ecology. Invited seminar at Johns Hopkins University, March 2017

Fuhrman, J.A. A long term perspective on recent advances in marine microbial ecology. Invited seminar at UC Santa Cruz, April 2017

Fuhrman, J.A. Where marine microbiology is going and how to get there” Invited talk at Gordon Research Seminar on Marine Molecular Ecology, Hong Kong July 2017.

Fuhrman, J.A. “Assessing potential interactions among viruses, bacteria, archaea, and protists via ‘omics and high resolution time series ” Invited talk at Gordon Research Conference on Marine Molecular Ecology, Hong Kong July 2017.

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Fuhrman, J.A. “From the microbial loop to ‘omics. Three decades of marine microbial ecology.” Invited Seminar, CIIMAR Porto Portugal. September 2017

RESEARCH GRANTS AWARDED (as sole Principal Investigator unless otherwise noted), current

Sponsor Title Amount Period $ Research Importance of Bacterio- 2,775 4/82-4/84 Foundation plankton Production inof SUNY Long Island Sound

NSF Dissolved Free Amino Acid 79,279 7/82-7/84 Chem. Formation in Seawater and Oceanogr. its Coupling to Uptake

Renewal 191,851 7/84-7/87

Second renewal 284,000 10/87-11/91

NSF Bacterioplanktivores: 96,217 1/83-1/85 Identification and Elucidation of Their Roles in Marine Food Webs

NSF Couplings between 169,105 11/84-11/87 nutrients, bacteria, and bacteriovores in estuarine plumes (a component of MECCAS, a multi-institution, multi-disciplinary project)

one-year renewal 42,000 11/87-11/88

Hudson Bacterioplankton in the 29,879 7/85-7/86River lower Hudson: biomass, Found'n growth, and interactions with hazardous pollutants

NSF Use of the Short-lived Assoc. 1986-88 isotope, 13-N, in marine Investigator nitrogen cycle studies

NSF Characterization of 355,400 12/87-10/92 culturable and nonculturable marine bacteria: a 16S rRNA sequence approach

Sea Viruses in the ocean 127,000 10/91-10/94Grant near Los Angeles

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NSF Novel marine archaebacteria: 49,964 2/92-2/93 potential contribution to mid- water biomass and activity

NSF Survey of prokaryotic marine 152,699 7/92-7/94 plankton

Renewal 299,315 7/94 - 7/97 Research Experiences for Undergraduates (Supplement) 20,000 7/95 - 7/97

Renewal 245,917 6/97 -1/01 Research Experiences for Undergraduates (Supplement) 10,000 6/98 - 5/00

Santa Enteric virus detection in Santa 34,169 6/95-5/96Monica Monica BayBayRestorationFoundation

NSF Viruses in marine food webs 285,000 11/92 - 11/96

Renewal 320,375 10/96 -9/99

Renewal 390,000 8/99 – 7/02

Renewal 402,139 2/03 –1/07

Sea Viruses in the ocean 110,582 10/96-3/99Grant near Los Angeles

Renewal 150,104 3/99 – 3/02

NSF Discovery and characterization 1,049,654 9/00-9/06 of marine bacteria, archaea, and protisa from the San Pedro Channel time series (D. Caron, co PI) (Microbial Observatory)

NSF Survey of marine prokaryotes 149,998 11/00-10/02

Sea An integrated approach to 152,034 3/01 – 8/03Grant understanding nearshore

processes and microbial beach contamination in an urban coastal region (B. Jones and D. Sherman co-PIs)

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Sea Molecular assays of human 100, 228 3/02-2/04 Grant pathogenic viruses in the coastal zone

Sea Factors Affecting Dispersion 105,532 3 /04 –2/07Grant of Pathogenic Microorganisms in Coastal Waters ( B. Jones Co-PI)

NSF Relating Microbial Biodiversity 553,151 9/05-10/09 to Biological Oceanographic

Processes (D. Capone Co-PI)

NASA Detection of airborne viruses 150,000 11/05-11/06(JPLSubcontract)

NSF Biogeochemical roles 257,392 8/06- 9/09 of planktonic archaea

Sea Stormwater, Pathogens, 58,821 3/07-3/08Grant and Particles – Presence

and Transport from an Urban Watershed (Burton Jones, PI)

NSF Experimentally linking 330,000 3/07 – 2/11identification and function

of marine bacteria

CICEET Assessment of microbial 55,890 5/07-4/08(UNC contaminants pertinent toSub- swimming related illnessescontract) at Doheny Beach

NSF Assembly of marine 1,200,000 8/07 -8/13microbial communities (with 1 yr no-cost extension)(Microbial Observatory)(co-PI with D. Caron)

Sea High Resolution Remote 162, 406 2/10-1/12Grant Sensing of Coastal Discharge

Algal Blooms in the Southern California Bight

(Burton Jones, PI)

NSF Marine viral dynamics and 565,955 10/10-9/14 incorporation into microbial (with 1 yr no-cost extension) association networks

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NSF ATD: Computational Analysis 608,732 2/11-2/14 of Metagenomic Sequencing Data ($74,546 to JAF) (co-PI with T. Chen and F. Sun)

NSF Dimensions: Pattern and process 1,999,577 10/11 – 3/17 in marine bacterial, archaeal, and +116,000 + 4008 supplements protistan diversity, and effects of (no-cost extended from 9/16) human impacts.Co-PIs: D. Caron, J. Heidelberg, W. Nelson, F. Sun, T. Chen.

Gordon Support Marine Microbial 2,093,000 7/13-6/18And Betty Ecology ResearchMoore Foundation

NSF Environmental regulation of 827,621 8/2013-8/2017 retinal and bacteriochlorophyll no-cost extended biosynthesis (Co-PI with Sergio Sañudo-Wilhelmy)

NSF Inference of Markovian Properties 600,000 9/2015-8/2018 of Molecular Sequences Using Shotgun Reads and Applications (Co-PI with Fengzhu Sun and Michael Waterman)

NIH Computational Studies of Virus-host 1,624,622 4/2017-3/2021 Interactions Using Metagenomics Data and Applications

(Co-PI with Fengzhu Sun, Michael Waterman, Stacey Finley, Nathan Ahlgren)

Simons Simons Collaboration on Computational 1,999,578 7/2017-6/2022Foundation Biogeochemical Modeling of Marine Ecosystems

(SCBIOMES): Microbial growth, interactions, and biogeographies from ‘omics data.

Consulting Projects

Microbial contamination of beaches in Avalon Harbor, Santa Catalina Island, Califonia 2001. Supported by State of California. Focus on human-based sources. Result was that the beach appeared to be contaminated by leaking sewer pipes, which were then slip-lined, this reduced the contamination considerably.

Microbial contamination of beaches in Huntington Beach, California, with a focus on the contribution of a power plant, 2002. Supported by California Energy Commission. Result was that the plant did not appear to be a significant source of human-based contamination.

Microbial contamination of Topanga Creek watershed, California, 2003-2004. Supported by State of California.

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Measurement of airborne human pathogenic viruses (Varicella zoster, Coronavirus, Epstein-Barr, Influenza, Respiratory Syncytial Virus, Adenovirus) in enclosed public places (2005-2006). (subcontracted by JPL, TSA project)

Microbial testing of Southern California waters, 2002-present. Supported by State of California as well as various local agencies and NGOs (often coordinated through Southern California Coastal Water Research Project). Numerous studies including development of new field tests for a variety of viral pathogens and human bacterial source indicators, improvement of these tests to be faster and less expensive, and laboratory inter-calibrations. Also includes performing the tests as a service (fee-based).

Evaluation of microbial complications and impacts of proposed desalination plant in Orange County, CA 2012

Review and constructive improvement recommendations for proposals to Genome Canada for Genome Quebec, 2015, 2016. Science advisory committee to that funded project 2017-

Students Advised and their Projects

Marianne Legier (M.S. 1985)- Copepod chemo- and mechanoreception

John Hudak (M.S. 1985) - Bacterial interactions with organic pollutants: effects on productivity, detoxification, and implications for the ecosystem as a whole

George McManus (Ph.D. 1986) - Quantitative ecology of marine bacterivorous nanoplankton

James Mitchell (Ph.D. 1987) - Small-scale (micrometer to meter) ecology of marine bacteria and phytoplankton, with particular reference to fluid dynamics.

SangHoon Lee (M.S. 1986, Ph.D. 1990) - Conversion from biovolume to carbon and nitrogen content in "seawater cultures" of naturally-derived bacteria (M.S. work). Molecular genetic analysis of natural microbial species composition and diversity.

Lita Proctor (Ph.D. 1991)- Bacteriophage infection in marine systems.

Robin Wilcox (M.S. 1993) Lysogeny vs. lytic growth of marine viruses

Stefanie Gehret (M.S. 1998 ). Microbial biodiversity - experimental approaches

Rachel Noble (Ph.D. 1998). Fates of viruses in marine systems

Alison Davis (M.S.). Probing of rRNA from colony blots to identify bacteria.

Cleber Ouverney (Ph. D. 2000). Quantitative microbial biodiversity/activity studies with fluorescent rRNA-targeted probes, also combination with microautoradiography

Ian Hewson (Ph.D. 2005). Virus in benthic and coastal systems, effects on bacterial diversity

Xiaolin Liang (M.S. 2005) Microbial contamination of coastal waters

John Griffith (Ph.D. 2006). Human enteric viruses and indicator bacteria in the coastal zone, molecular methods intercomparisons and verification, microbial contamination source tracking

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Michael Schwalbach (Ph.D. 2006). Viral ecological effects / Phototrophic bacteria

Joshua Steele (Ph.D. 2010) Microbial community composition patterns and sea surface films

Anand Patel (Ph.D. 2010) Marine biofilms, viruses and archaea

Cheryl Chow (Ph.D. 2012. NSF Fellow). Bacterial and viral diversity time series and relationships

Jacob Cram (Ph.D. 2014). Bacterial diversity time series and depth patterns

David Needham (Ph.D. 2015, NSF Fellow). Marine viral effects on biogeochemical cycles

Alma Parada (Ph.D. 2016, NSF Fellow). Archaeal diversity time series and depth patterns

Ella Sieradzki (Ph.D student, USC Provost’s Fellow). Marine archaea and human impacts

Yi-Chun Yeh (Ph.D. student, USC Global Fellow). Application of ecological theory to marine microbial systems

(Also served on numerous M.S. and Ph.D. committees)

Postdoctoral Researchers Supervised

Curtis Suttle (1986-88) - Nitrogen (organic and inorganic) and phosphorus cycling by marine plankton

Yaeko Masuchi (1989-90) - 16S rRNA sequencing of marine bacterial oligotroph cultures, search for "representative" cultures by DNA-DNA hybridization, direct sequencing of PCR-amplified 16S rRNA genes

Kirk McCallum (1990) - cloning and sequencing of PCR-amplified 16S rRNA genes from natural marine microbial assemblages

Markus Karner (1995-96) - single cell molecular probes and relation to native bacterial activities

Pierre Rossi (1996-97) - microbial biodiversity patterns by single cell probes and DNA reassociation kinetics

Rachel Noble (1998-2001, in cooperation with Wrigley Institute for Environmental Studies and Southern California Coastal Water Resources Project) - coastal monitoring of native and contaminant bacteria and viruses in relation to water quality issues.

Mark Brown (2002- 2004)- intensive studies of microbial diversity at the San Pedro Time Series / Microbial Observatory site.

J. Michael Beman (2006-2008) – roles of marine archaea in N cycling

Laura Gomez-Consarnau (2010- 13, 2014-15) - proteorhodopsin roles in microbial ecology; microbial ecology of vitamins; impact of ocean acidifaction on marine bacteria

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Lyria Berdjeb (2014-16) – integration of growth and grazing on the control of marine microbial populations

Nathan Ahlgren (2013-16) – Single cell marine genomics, marine archaeal genomics, viral genomics, and interactions among bacteria, archaea, and protists

David Needham (2015-17) – High frequency molecular genetic studies of bacteria, viruses, and microbial eukaryotes

Julio Cesar Ignacio Espinoza (2015- )– Bioinformatic analysis of marine viral and microbial communities, and interactions among those communities

Outside (non USC) Student Committees

Laura Gomez-Consarnau – Kalmar University, Sweden. Served as “Opponent” in Ph.D. defense, June 2009.

Tom Delmont – University of Lyon, France. Served as outside PhD committee member, December 2011

Sachia Jo Traving – Copenhagen University, outside PhD committee member, June 2016

Courses Taught

Environmental Microbiology (undergraduate)

Introduction to Microbiology (undergraduate)

Marine Microbiology and Microbial Ecology (both graduate and undergraduate level)

Biological Oceanography (undergraduate, at Santa Catalina Island)

Advanced Biological Oceanography (graduate)

Oceanography (undergraduate, primarily for nonscience majors - taught biological portion)

Special Topics in Marine Microbiology (seminar-type courses, versions include a focus on molecular biological approaches to diversity and function)

Seminar in Ecology (various topics - usually related to pelagic ecology)

Environmental Biology (General Education, topic - ozone depletion)

Summer Course in Marine Microbial Ecology at Bermuda Biological Station (summer 1987, with D. Capone, 1991 with B. Taylor)

Summer Course in Protozoology at University of Copenhagen Marine Laboratory, Helsingør, Denmark (1988 with T. Fenchel and B. Finlay)

Advanced General Biology: Organismal Biology and Evolution (undergraduate – Honors version)

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Molecular Methods in Microbial Ecology (undergraduate, Santa Catalina Island)

STAMPS (Strategies and Techniques for Analyzing Microbial Population Structure) Course Lecturer, marine Biological Lab, Woods Hole, August 2011 and August 2012

Committees, Panels and related service, At USC:

HIMS Director Search Committee (88-89)Committee for development of R/V Osprey (88-89)Marine Biology Comprehensive Exam Committee (88-91)Marine Biology Committee on Graduate Studies (88-91)Marine Biology Screening Exam Committee (88-93, 99-07)Neurobiology Senior Faculty Search Committee (89-91)Chair of Catalina Postdoc Fellowship Search Committee (89-90)Ship Committee (R/V Vickers) 90-91Hancock Institute of Marine Studies Advisory Committee (90-95)Hancock Institute of Marine Studies Executive Committee (95-97)Department Instructional Committee (91-94)Department Executive Committee (91-94, 96-99)Ship Users Committee (91-93)CRESPE Committee on microbiology (91-93)University-wide Radiation Safety Committee (member 91-96, Chair 92-96)Promotion Committees (Prof. Ko, Prof. McFall-Ngai) 1992-93Department Curriculum Revision Committee (93-96)Department of Biological Sciences Chair (94-97)Ad Hoc Committee of Natural Sciences Chairs on General Education (94-96)Search for Wrigley Chair and associated junior faculty (Chair 96-98)Provost’s Research Committee (97-99)Search for 2nd Wrigley Chair (Co-Chair 98-00)College of Letters, Arts, and Sciences Personnel Committee for Natural Sciences & Mathematics (98- 00, 02-04, Chair 03-06)Provost’s Initiative on Urban Sustainability (00-01)Center for Electron Microscopy and Microanalysis Advisory Committee (01- 08)Biology Website update committee (focus on Graduate Recruitment) (02-03)Search Committee for Microbiologist, USC School of Dentistry (02-03)Search Committee for Physiological Ecologist (03-04)Marine Environmental Biology cluster hire dossier committee (05-06)Department self-study committee, headed section on quality assessment (08)Wrigley Oversight and Resources Committee (08-10)Wrigley Strategic Planning Advisory Committee (08-10)Discovery Scholar Prize Panel (08-11) USC College Faculty Council (08-12)Vice-chair, Research Caucus of Faculty Council (08-09)USC College Dean’s Research Excellence Advisory Board (08-10)College award advisory committee (08, 09)Director of Marine Environmental Biology Program, Dept. of Biological Sci., (09-12)Chair, Research Caucus of College Faculty Council (09-12)Marine and Environmental Biology Faculty Merit Review Committee (2009-2013)NTT faculty search committee (2014)Biological Sciences Self Study Committee (2014-15)

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NTT faculty evaluation committee (2015-)Interviewer for Presidential/Trustee Scholarship Candidates (07-)National Fellowship advisory group (college-wide) (2012-)Marine Biology Graduate Admissions Committee (88-93, 99-03, 16-17, Chair 03-10, 10-)Geobiology faculty search committee (2015-2017)Provost’s Research Collaboration fund review (2016-)

National / International/ Regional: ( current )

NSF Biological Oceanography Review Panels 1990, 2000DOE Subsurface Biology Advisory Panel 1992NSF Advisory Panel reviewing JGOFS 1993NSF Biotic Surveys and Inventories Review Panel 1996NSF Biotic Surveys and Inventories Workshop 1996NSF Marine Biodiversity Workshop, Denver, 1993 NASA Planetary Protection Workshop, JPL 1997 NSF Workshop on future of Biological Oceanography (OEUVRE), Keystone, CO, 1998NSF Conference on Biodiversity Observation Networks (later NEON) , San Francisco, 1999NSF Workshop on Environmental Determinants of Carbon Cycling, 1999Visiting Committee to evaluate future of Univ. of Kiel Marine Science Research 1999 National Sea Grant Press Briefing, microbiological safety of marine waters, 1999National Research Council Ocean Studies Board Workshop on Opportunities for Environmental Applications of Marine Biotechnology, Washington DC, 1999ASM Microbiological Diversity Meeting Plenary Roundtable 1999NSF/NIEHS Panel on Oceans and Human Health, Research Triangle Park, NC, 2001Co-Convener for Marine Microbiology in DIVERSITAS (sponsored by IUBS, SCOPE, UNESCO, IUMS, ICSU, IGPB) 1998- 2014Project Leader, Discovery of New Microbial Kingdoms, International Biodiversity Observation Year (2000-2002)Scientific Committee of DIVERSITAS-Core Project 2, called EcoSERVICES, 2003-present and Marine Biology Working Group 2005-2014SCOR Working Group 126 on Role of Viruses in Marine Ecosystems 2005-10American Academy Of Microbiology Colloquium participant, "Marine Microbial Diversity: The Key to Earth's Habitability" 2005Working Group on Microbial Diversity, National Center for Ecological Analysis and Synthesis 2004-2006Advisory Committee for SCCWRP Water Quality and Epidemiology Study of Dana Point, Surfrider Site visit team, NSF Center for Coastal Margin Observation and Prediction, 2011-12 Experts Panel, SOCOD Desalination Plant Pilot Study, Orange County, CA 2012Advisory Panel to American Association for the Advancement of Science to evaluate the Moore Foundation Marine Microbiology Initiative 2012Beach, Avalon 2006-ASLO Awards Committee 2011-2014Working Group on Ocean Viral Dynamics at the National Institute for Mathematical and Biological Synthesis, 2012-2014DOE Joint Genome Institute Microbial Genomics & Metagenomics Program User Advisory Committee 2010-15 (Regional) Topanga Watershed Advisory Committee, and ad hoc advisory group for local water quality issues (1998- )Steering Committee, Earth Microbiome Project 2010-Science Advisory Board, Tara Oceans 2010-, Chair 2011-12

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Genome Canada advisory (2015-16), Research Oversight Committee (2016-)

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