vocabulary knowledge center update vcde workspace july 21, 2011
TRANSCRIPT
Vocabulary Knowledge
Center Update
VCDE Workspace
July 21, 2011
Agenda
• Tools Update• Outreach
– Conferences and customers• Knowledge Base• Projects• Knowledge Base Highlight• Questions/Feedback
Tools UpdateLatest Releases
• LexEVS 6.0 (2/1)– Much anticipated release with pre-CTS2 functionality– Dev funding for 6.1 has paused temporarily– Open source opportunities (McGill University, BiKE)
• NCI Protégé 1.4.3 (2/7)– Final release, before maintenance mode
• LexWiki Publisher 2.0 (3/14)– Loads content from LexEVS into LexWiki– Very configurable, works on any terminology in
LexEVSMigration to
JIRA complete
Tools UpdateLatest Releases
• CDE Browser 4.0.2 (3/31)• NCBO BioPortal 3.1 (7/8)• CTS 2 Specification
– Approved as a OMG beta specification– Please refer to the previous presentation for details
OutreachConferences
Past conferences
Future conferences• AMIA 2011 TBI/CRI Joint Summit (Freimuth, Tao, Jiang)• Seoul National University at Rochester (many)• OMG SOA in Healthcare (Solbrig, Peterson, Stancl)
• ICBO (Tao, Jiang, Pathak, Freimuth)Future
Past
OutreachCustomers
• HSDB federation/OSU– OCRe Terminology curation set now
• Center for Disease Control (CDC)– Reviewing PHIN VADS in light of CTS 2
• TRANSFoRm (European Health Care)– Specifically interested in Value Sets
• McGill University (Canada)– Published paper on NCI EVS and BioPortal (in
French)– Collaboration on loader for ATC (drug statistics
terminology supported by the WHO)
New Tools fact sheet created for distribution
OutreachCustomers (continued)
• Queensland Health (Australia)– Local ontology development, tie into to controlled
• Seoul National University (BiKE)– 5 years development on LexCare Suite (EVS from 2005)– MoU for collaboration
• Astrazeneca– Interest in services, curation, and workflow practices
• MOH Holdings (Singapore)– Tested LexEVS, wants to use REST, may write their own
OutreachCustomers (continued)
• Universidade de Averio (Portugal)– ICD-9 to 10 mapping– Interested in mapping local to controlled
• University of Ljubljana (Slovenia)– Raising awareness of NCI EVS to Ministry of Health– Preparing a comparision, LexEVS, Carecom, and one
other• Cordelier Research Center
– Wants to use LexEVS in distributed data warehouse
Knowledge BaseExpanding the semantic universe
• Semantic Web Technology Interest Group (SemTIG)• Semantic Media Wiki concepts, technologies,
resources• Introduction to the semantic web• NCI Term Browser install• Tool Roadmaps
Knowledge BaseExpanding the semantic universe
• LexEVS 5.x to 6.0 migration• Removal of old LexGrid.org site• Navigation and indexing of the LexEVS Javadocs • NCI Term Browser usage video• LexWiki Publisher video• Updated LexEVS “Remote API’ to “Distributed”
ProjectsNow and on the horizon
• Public relations for the soon-to-be NCI Value Set Browser
• Ontology Representation Working Group• LexEVS bug fixes• Differences between NCI-m and NCI-t• Library of Documents organization• Chinese page updates
ProjectsNow and on the horizon
• Migration from Media Wiki to Confluence
thesaurus.cancer.govncit.cancer.gov ncit.nci.nih.gov
nciterms.nci.nih.gov
NCI term browsers
wiki.nci.nih.gov
NCI wiki dashboard
VCDE work
space
cabig.nci.nih.gov
caBIG community web site (all work spaces)
VCDE work
space
cabig-kc.nci.nih.gov/Vocab/KC
Vocabulary Knowledge
CenterFinding caBIG Tools
ncicb.nci.nih.gov
Original NCI CB
site
cancer.gov
NCI Cancer(gov)
evs.nci.nih.gov
NCI EVS (about
terminologies & browsers)
Down loads
GForge downlo
ads
Redirects
VKCKnowledge Base Highlight
• LexEVS Highlights(Main functions- qualifications)– Model– Authoring– Versioning– CTS– Mapping– Value Set– Pick List
– Loaders– Exporters– Query– Web Services– Extensibility– Semantic Web– Other
Email: [email protected]
Web site: http://cabig-kc.nci.nih.gov/Vocab/KC
Forums: https://cabig-kc.nci.nih.gov/Vocab/forums/
Follow us on Twitter: http://twitter.com/VocabKC
Questions and Feedback