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What is Special About Phosphate? Christopher Butch Research Scientist BMSIS, ELSI, and Emory University

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Page 1: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

What is Special About Phosphate?

Christopher ButchResearch ScientistBMSIS, ELSI, and Emory University

Page 2: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

EnergyActivation

• PhysicalEnergyActivation

• Chemical

Page 3: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones

Page 4: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones

Page 5: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones

Page 6: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones

Page 7: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones• Phospholipid Bilayers

Page 8: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones• Phospholipid Bilayers

Page 9: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Structural

• Nucleic Acid Backbones• Phospholipid Bilayers

Page 10: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Physical

• Compartmentalization

Page 11: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Physical

• Compartmentalization

Page 12: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Chemical

• Energy

“On any given day you turn over your body weight equivalent in

ATP, the principal energy currency of the cell.”

Törnroth-Horsefield, Susanna, and Richard Neutze."Opening and closing the metabolite gate." Proceedingsof the National Academy of Sciences (2008): pnas-0810654106.

Page 13: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Chemical

• Energy

Page 14: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology

• Chemical• Energy

• Chemical• Energy• Activation

Synthesis of β-5-phosphorybosylamine

Page 15: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

The roles of phosphate in biology • Chemical

• Energy• Activation

• Physical• Compartmentalization• Signaling

• Structural• Nucleic Acid Backbones• Phospholipid Bilayers

Page 16: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

Why wouldn’t life use phosphate?• Scarce

• Insoluble, unreactive• No polyphosphate minerals• One pyrophosphate mineral• Limited geochemical production of reactive forms

Keefe, Anthony D., and Stanley L. Miller. "Are polyphosphates or phosphate esters prebiotic reagents?." Journal of molecular evolution 41.6 (1995): 693-702.

Page 17: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

Open Questions:• When did life begin to use

phosphate?

Page 18: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

Open Questions:• When did life begin to use

phosphate? • If not at the very beginning, what

came before?

Page 19: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

Open Questions:• When did life begin to use

phosphate?• If not at the very beginning, what

came before?• Where did early phosphate come

from?

Page 20: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

Suggested ReadingLibreTexts: Organic Chemistry with a Biological Emphasis

(Soderberg) – Chapter 10: Phosphoryl transfer reactionshttps://chem.libretexts.org/Textbook_Maps/Organic_Chemistry/Book%3A_Organic_Chemistry_with_a_Biological_Emphasis_(Soderberg)/10%3A_Phosphoryl_transfer_reactions

Remnants of an Ancient Metabolism without Phosphatehttps://www.cell.com/cell/fulltext/S0092-8674(17)30133-2

Life - Special Issue "Phosphorus (P) and the Origins of Life“https://www.mdpi.com/journal/life/special_issues/origins_life

Page 21: What is Special About Phosphate? - Amazon S3 · phosphate? •Scarce • Insoluble, unreactive • No polyphosphate minerals • One pyrophosphate mineral • Limited geochemical

ReferencesWestheimer, Frank H. "Why nature chose phosphates." Science

235.4793 (1987): 1173-1178.Soderberg, Timothy. "Organic Chemistry with a Biological

Emphasis Volume I." (2016).Goldford, Joshua E., et al. "Remnants of an ancient metabolism

without phosphate." Cell 168.6 (2017): 1126-1134.Törnroth-Horsefield, Susanna, and Richard Neutze. "Opening

and closing the metabolite gate." Proceedings of the National Academy of Sciences (2008): pnas-0810654106.

Keefe, Anthony D., and Stanley L. Miller. "Are polyphosphates or phosphate esters prebiotic reagents?." Journal of molecular evolution 41.6 (1995): 693-702.