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Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany

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Page 1: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Challengesin

Biological Oceanography

Arzhang Khalili

Max Planck Institute for Marine Microbiology

Bremen, Germany

Page 2: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Oceans : Source of Inspirations

Drop of Ocean Water : 2000 – 20000

Microorganisms Emodnet (Sediment)

Naval Office of Oceanography (Sediment)

NASA (Primary Production, average 2014-2015)

Page 3: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

E.T. the Extra-Terrestrial(1982)

Page 4: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Mussel

Surgical Glue Shuts Down Bleeding Wounds in 60 Seconds

Page 5: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Seapocks

Bio-glue from Seapocks

Page 6: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Light Producing Organisms

New LED Technology

Page 7: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Chironomus PlumosusLarva

Inspiring Micro Pumps

Page 8: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Chironomus PlumosusLarva

Morad et al. Aquat Ecol (2010)

SimulationPumping Rate: 106 m3/2.5 days

Page 9: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Marine Sponge

Bone Tissue from Marine Sponge

Page 10: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Coral Reefs

Page 11: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Coral Reefs

Tropical Rainforests of the Ocean

Page 12: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Coral Reefs

• Antifouling and “Agrochemicals”

• New Biomaterials

• New Pharmaceutical Products

Page 13: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Mangroves

Page 14: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Mangroves

• New Biologically Active Compounds

• New Therapeutic Agents

Page 15: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Seagrass

Page 16: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Seagrass

Important Carbon Sinks & N2 Fixer in Coastal Systems

Page 17: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Persian Gulf Meets All Challenges

Page 18: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

∆𝑇 ≈ 22° C Depth ≈ 100 𝑚

Salinity ≈ 37 − 40 𝑝𝑝𝑚

Uniqueness of Persian Gulf

Page 19: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

German-IranianCollaboration

DFG – INSF

BMBF – MSRT

Page 20: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

A DFG-INSF funded Workshop

Page 21: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

New Proposal to BMBF

Page 22: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

German – Iranian Working Groups

Page 23: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

AWI BremerhavenMaarten BoersmaClaudio Richter

GEOMAR, KielMartin Wahl

ICBM OldenburgUlrike FeudelPeter Schupp

IGB, BerlinHans-Peter Grossart

MPI & JUB BremenArzhang KhaliliNasrollah Moradi

ZMT BremenTim Jennerjahn,Andreas Kunzmann

Uni Rostock,Maximilian Berthold

Marum BremenChristiane Schmidt

Uni BremenAlexander Petrovic

IOW, WarnemundeMarvin Lorenz

German Scientists

Page 24: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Leila Abdoli, Lecturer, Department of Fischeries Science (Marine),

Hormuzgan University, Bandar-e Abbas

Mohammad S. Alavi-Yeganeh, Assistant Professor, Department of Marine

Biology, Tarbiat Modares University, Tehran

Gilan Attaran-Fariman, Associate Professor, Department of Marine

Biology, Faculty of Marine Sciences, Chabahar Maritime University,

Chabahar

Amir Ghazilou, Iranian National Institute for Oceanography and

Atmospheric Science (INIOAS), Tehran

Keivan Kabiri, Assistant Professor, Department of Marine Remote

Sensing, Iranian National Institute for Oceanography and Atmospheric

Science (INIOAS), Tehran

Saber Khodabandeh, Associate Professor, Tarbiat Modares University,

Noor

Abdolvahab Maghsoudlou, Assistant Professor, Head of Marine

Bioscience Department, Iranian National Institute for Oceanography and

Atmospheric Science (INIOAS), Tehran

Iranian Scientists

Page 25: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Masoumeh Malek, Associate Professor in Marine Zoology, Deputy Dean of

College of Science, University of Tehran

Sanaz Moghaddam, Marine Biology Department, Shahid Beheshti University,

Tehran

Fatemeh Mohammadipanah, Assistant Professor, Microbial Technology and

Products (MTP) Research Center, Department of Microbiology, University of

Tehran, Tehran

Masoud Moradi, Assistant Professor, Department of Marine Remote Sensing

Iranian National Institute for Oceanography and Atmospheric Science (INIOAS),

Tehran

Reza Naderloo, Assistant Professor, School of Biology and Center of

Excellence in Phylogeny of Living Organisms, College of Science, University of

Tehran, Tehran

Ali Nasrolahi, Assistant Professor, Department of Marine Biology, Faculty of

Biological Sciences, Shahid Beheshti University, Tehran

Mahshid Oladi, Marine Biology Department, Shahid Beheshti University, Tehran

Payam Parsizadeh, Iran National Science Foundation (INSF)

Hassan Rahimian, Associate Professor in Marine Zoology, Faculty of Science,

University of Tehran,Tehran

Iranian Scientists

Page 26: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Mohammad Sharif Ranjbar, Assistant Professor, Department of Marine

Biology, Hormuzgan University, Bandar-e Abbas

Alireza Sari, Professor of Systematic Zoology, Zoological Museum and Centre

of Excellence in Phylogeny of Living Organisms, School of Biological

Sciences, College of Science, University of Tehran, Tehran

Ahmad Savari, Professor, Marine Biology Department, Khorramshahr

University of Marine Science and Technology

Jafar Seyfabadi, Assistant Professor, Tarbiat Modares University, Noor

Saloomeh Shoaei, Microbiology Department, Shahid Beheshti University,

Tehran

Mohammad Reza Shokri, Assistant Professor, Marine Biology Department,

Shahid Beheshti University, Tehran

Mohammad Ali Zahed, Assistant Professor, Biology Department, Kharazmi

University, Tehran

Nosratollah Zargham, PhD, President, Iran National Science Foundation

(INSF)

Nasser Hadjizadeh Zaker Dr., Iranian National Institute for Oceanography and

Atmospheric Science (INIOAS), Tehran

Iranian Scientists

Page 27: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Special Equipment

Page 28: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Lander

Exploring Deep Sea

Page 29: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Mobile Free Floating off-Shore Mesocosm

Geomar, Kiel, Germany

Page 30: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Nanometer-Scale Secondary Ion Mass Spectrometer

(NanoSIMS)

Max Planck Institute , Bremen, Germany

lateral distribution of any element and its isotopes on a single cell surface

Page 31: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

What to do now?

Page 32: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Let’s Start !

Page 33: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Thank You!

Page 34: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Marine Aggregates

Page 35: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Size/Shape of Marine Aggregate

~ μm ~ mm ~ cm

Grossart (2004) Ploug (2000) Lampitt (2000)

Page 36: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

What are Marine Aggregates?

- dead / dying animals- fecal material- other inorganic dust- plants (plankton)- protists- sand - soot- TEP

Page 37: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Role of Marine Aggregates

Chisholm (2000)

Page 38: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Across Scales and Disciplines

μm

mm

m

km

- Coagulation & microbial cell-cell interaction

- Modification of aggregation & disaggregation

- Processes controlling OM turnover

- Aggregate flux in the field-scale

- Global effects

nm

Page 39: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Global Carbon Circulation Model HAMOCC

Density difference between 100 m and 0 m

Page 40: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

An Aggregate Model

Page 41: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Velocity Field

Re = 0.1 Re = 10

Moradi et al. (in Prep.)

Page 42: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Concentration Field

Pure Diffusion Re = 0.1 Re = 10

Moradi et al. (in Prep.)

Page 43: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Correct Estimation of Total Flux

Ploug et al. (1999) Moradi et al. (in Prep.)

Page 44: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Sinking in Sudden Stratification

Kindler et al. (2012)

Page 45: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Diffusion Limited Retention

Page 46: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Sinking in Linear Stratification

Kindler et al. (in Prep.)

Page 47: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Governing Equations

Page 48: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Drag Enhancement!

Light liquid is entrained and strives upwards dragging the aggregate

Aggregate in Linear Stratification

Page 49: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Coral Reefs

Schupp et al. (2002)

Natural Products Discovery

Page 50: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Seagrass

Maximum N2 Fixation at the Rhizomes

Page 51: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Bioinformatics

Page 52: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Bioinformatics

• Bringing Together

- Organism Diversity

- Abundance Data

- Functional Data

- Environmental Data

• Developing Components/Standards

for the Dynamic Integration of Knowledge

Page 53: Challenges in Biological Oceanography...Challenges in Biological Oceanography Arzhang Khalili Max Planck Institute for Marine Microbiology Bremen, Germany Oceans : Source of Inspirations

Coral Reefs Extreme high biodiversity!

Organisms are competing for limited

resources

Potential for discovery of new

pharmacologically active compounds