chapter 6 expression of biological information (part iv) by : biology unit kedah matriculation...
TRANSCRIPT
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Chapter 6
Expression of Biological Information (Part IV)
By :
Biology UnitKedah Matriculation College
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Concept review…
DNA & genetic
information DNA
replication
Protein synthesis
Gene regulation & expression
DNA structure
DNA as a carrier
Gene concept Definition
Models of DNA replication
DNA replication process
Enzyme involved
Transcription
Translation
Expression of Biological Information
concept
Components
Mechanism
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Learning outcome
Explain translation in protein synthesis
Describe the stages involved:
i. initiation ii. elongation (codon recognition, peptide bond formation and translocation) iii. termination
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Translation
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Translation
Translation - a process
- whereby the genetic information in mRNA strand
- is translated into sequence of amino acids to form polypeptide/protein
Occurs in cytoplasm
Definition
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Translation
RNA direct the synthesis of polypeptide.
cell interprets a genetic message and builds a protein accordingly.
The message is a series of codons along an mRNA molecule and interpreter is
transfer RNA
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Structures that involve in translation
Ribosome tRNA
mRNA
triplet bases on tRNA: anticodon
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Structures that involve in
translation:1. tRNA tRNA transfer amino acid
from cytoplasm to ribosome
tRNA can be used repeatedly.
Each type of tRNA molecule associates a particular mRNA codon with a particular amino acid.
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Shape: 2-dimensional –cloverleaf shape.
tRNA includes the anticodon, the specialized base triplet that binds to a specific mRNA codon.
e.g.: mRNA codon UUU has AAA as its anticodon.
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From the other end of the L-shaped tRNA
molecule protrudes its
3’end; the attachment site for
amino acid.
tRNA with amino acid; aminoacyl
tRNA.
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2. Aminoacyl-tRNA synthetase
Catalyze the matching up of amino acid with the correct tRNA and using energy of ATP
(activation of amino acids)
Catalyzes the covalent attachment of amino acid to the 3’- OH of tRNA.
Resulting aminoacyl tRNA
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Activation of aminoacyl tRNA
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3. Ribosomes
Facilitate the specific coupling of tRNA anticodons with mRNA codons during protein
synthesis.
A large and small subunit join to form a functional ribosome only when they attach to
mRNA molecule.
Each ribosomal subunit is consist proteins and ribosomal RNA (rRNA).
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Ribosome has TWO binding site for mRNA:
P site (peptidyl-tRNA site)
Holds the tRNA carrying the growing polypeptide chain.
A site (aminoacyl-tRNA site)
Holds the tRNA carrying the next amino acid to be added to the chain.
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Translation process
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Overall Process…
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3 steps of translation process,
synthesis of a polypeptide chain :
1. Initiation
2. Elongation
3. Termination
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Bring together mRNA and tRNA bearing the first amino acid of polypeptide and two subunits of ribosome.
Small ribosomal subunit binds to mRNA that being
read from 5’ to 3’.
1. Initiation
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Initiation
Then initiator tRNA base-pairs with the start codon
Arrival of a large subunit completes the
initiation complex
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Initiation
initiation factor: required to bring all the translation components together
Initiator tRNA site in the P site of ribosome and vacant A site is ready for next tRNA.
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initiation complex of translation
Ribosome (large)
tRNA
mRNA
Ribosome (small)
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2. Elongation
Amino acid are added one by one to the initial amino acid. Each addition, occurs in 3 steps cycle.
i. Codon recognitionii. Formation od peptide bondiii. Translocation
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i. Codon recognition
mRNA codon in A site forms hydrogen bonds with the anticodon of an incoming molecule of tRNA carrying its appropriate amino acid.
Elongation factors lead the tRNA into A site. hydrogen
bonds
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ii. Peptide bond formation
Polypeptide detaches from tRNA (in P site) to which it was bond and is link to amino acid carried by the tRNA (in A site)
large ribosomal subunit catalyzes the formation of peptide bond between polypeptide extending from P site and newly arrived amino acid in A site.
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2. Peptide bond Formation
3. Translocation
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iii. Translocation
tRNA in P site dissociates from ribosome.
tRNA in A site now attached to the growing polypeptide, is translocated to the P site
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as the tRNA changes sites, its anticodon remains hydrogen bonded to the mRNA codon, allowing the mRNA and tRNA molecules to move as a unit.
This movement, in turn, brings the next codon to be translated into A site.
Elongation is repeated as each amino acid is added to the chain until the polypeptide is completed.
iii. Translocation
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Peptide bond formation
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3. Termination Elongation continues until A site reaches
termination codon.
do not code for amino acids and stop translation.
- No aminoacyl tRNA recognize
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TerminationProtein called ‘release factor’ binds to the termination codon in A site.
- freeing the polypeptide from the ribosome.- mRNA detaches
- ribosome separates
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UAC
Met
Small Unit
Large Unit
Small Unit
P A
Initiation Complex
Initiation
5’ UUG UGG UAC AUG GAA GAG CAU … UGA 3’
Initiation codonAUG
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UUU
ACU
5’ UUG UGG UAC AUG GAA GAG CAA ….UGA 3’
UAC
Met
CUU
CUC
Elongation
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5’ UUG UGG UAC AUG GAA GAG CAU UGA 3’
GUG
ACU
Termination STOP codonUAA UAG UGA
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copyright cmassengale 41
Messenger RNA (mRNA)
methionine glycine serine isoleucine glycine alanine stopcodon
protein
A U G G G C U C C A U C G G C G C A U A AmRNA
startcodon
Primary structure of a protein
aa1 aa2 aa3 aa4 aa5 aa6
peptide bonds
codon 2 codon 3 codon 4 codon 5 codon 6 codon 7codon 1
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AmRNA U C C A U C A U G G G C U C C A U C G G
methionine
Codon 1
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Polyribosomes
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Polyribosomes/polysome
A group of several ribosomes attached to, and translating the same messenger RNA simultaneously
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Significance of polyribosome
Increase the rate of same protein synthesis/protein produced rapidly
more of same protein can be made simultaneously
Animation
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Can you tell the story?
DNA
pre-mRNA
ribosome
tRNA
aminoacids
polypeptide
mature mRNA
5' GTP cap
poly-A taillarge ribosomal subunit
small ribosomal subunit
aminoacyl tRNAsynthetase
E P A
5'
3'
RNA polymerase
exon introntRNA
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