defining the peroxisome - uza cema disease… · brown etal (1982) johns hopkins med. j. 151,...
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PEROXISOMAL DISEASES
Ronald JA Wanders
Laboratory for Genetic Metabolic Disorders
Department of Pediatrics & Clinical ChemistryDepartment of Pediatrics & Clinical Chemistry
Academic Medical Center
University Hospital Amsterdam,
Defining the peroxisome
10
20
30
40
50
enzy
me a
ctiv
ity (%
of to
tal)
katalase
glutDH
PGI
B-Hex
esterase
peroxisomes mitochondria
1954 Ultrastructural identification of peroxisomes as small cellular bodies (“microbodies”) by Rhodin
1960s Biochemical characterisation of peroxisomes byDeDuve and co-workers
1976 Identification of a complete fatty acid ß-oxidation system in rat liver peroxisomes
00 2 4 6 8 10 12 14 16 18 20
CEREBRO-HEPATO-RENAL SYNDROME OF ZELLWEGER = ZELLWEGER SYNDROME (ZS)
First described in 1964
More than 200 patients described in literature
Zellweger patients show a great number of abnormalities including craniofacial, neurological, ocular, hepatological and skeletal aberrations
Patients usually die early in life within the first year
Peroxisomes are absent in all body cells of Zellweger patients as first shown by Goldfischer etal. (1973) Science 182, 62-64 in hepatocytes and kidney tubule cells.
KEY FINDINGS INDICATING THAT ZELLWEGER SYNDROME IS TRUELY A DISEASE OF THE PEROXISOME.
Brown etal (1982) Johns Hopkins Med. J. 151, 344-351
1. ACCUMULATION OF HEXACOSANOIC ACID (C26:0)IN PLASMA FROM ZELLWEGER PATIENTS
CONTROL
ZELLWEGER
C26:0 (µmol/L) in plasma
0 6 12
KEY FINDINGS INDICATING THAT ZELLWEGER SYNDROME IS TRUELY A DISEASE OF THE PEROXISOME.
2.PLASMALOGEN DEFICIENCY IN ZELLWEGER SYNDROMEHeijmans etal (1983) Nature 306, 69-70.
E +
pP
E)
60
Per
cen
tag
e p
PE
of
(P
0
10
20
30
40
50
brain kidney liver muscle heart
Zellweger Controls
ABNORMAL METABOLITES IN ZELLWEGER SYNDROME
Zellweger
1. Accumulation of very-long-chain fatty acids
2. Deficiency of plasmalogens
Fatty acid ß-oxidationin peroxisomes
Ether-phospholipid biosynthesis
syndrome
ABNORMAL METABOLITES IN ZELLWEGER SYNDROME
Zellweger
1. Accumulation of very-long-chain fatty acids
2. Deficiency of plasmalogens
Fatty acid ß-oxidationin peroxisomes
Ether-phospholipid biosynthesis
syndrome
3. Accumulation phytanic acidFatty acid
alpha-oxidation
ABNORMAL METABOLITES IN ZELLWEGER SYNDROME
Zellweger
1. Accumulation of very-long-chain fatty acids
2. Deficiency of plasmalogens
3. Accumulation phytanic acid
Fatty acid ß-oxidationin peroxisomes
Ether-phospholipid biosynthesis
Fatty acid l h id tisyndrome
p y
4. Increased urinary excretion of oxalate and glycolate
alpha-oxidation
Glyoxylatedetoxification
5. Increased L-pipecolic acidL-Pipecolic acid
oxidation
METABOLIC FUNCTIONS OF PEROXISOMES IN HUMANS
Fatty acid ß-oxidation
Fatty acidalpha-oxidation
Etherphospho-lipid
biosynthesis
METABOLIC
Glyoxylatedetoxification
Otherfunctions
L-Pipecolic acid oxidation
METABOLIC FUNCTIONS
OF PEROXISOMES IN HUMANS
Metabolic abnormalities in ZS
Erythrocyte plasmalogens
VLCFA
Bile acid intermediates
Pristanic acid *
METABOLIC
Fatty acid ß-oxidation
Etherphospho-lipid
biosynthesis
Phytanic acid *
* Maybe normal, dependant on diet
Urinary oxalate and glycolate #
#Moderately elevated, AGT normal
L-Pipecolic acid
FUNCTIONS OF PEROXISOMES
IN HUMANS
Fatty acidalpha-oxidation
Glyoxylatedetoxification
L-pipecolic acid oxidation
Metabolic abnormalities in ZS
Erythrocyte plasmalogens
VLCFA
Bile acid intermediates
Pristanic acid *
METABOLIC
Fatty acid ß-oxidation
Etherphospho-lipid
biosynthesis
UNIQUE SETOF
Phytanic acid *
* Maybe normal, dependant on diet
Urinary oxalate and glycolate #
#Moderately elevated, AGT normal
L-Pipecolic acid
FUNCTIONS OF PEROXISOMES
IN HUMANS
Fatty acidalpha-oxidation
Glyoxylatedetoxification
L-pipecolic acid oxidation
OFPEROXISOMALBIOMARKERS
LIST OF PEROXISOMAL DISORDERSPEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
SINGLE PEROXISOMAL ENZYME DEFICIENCIES
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency- Sterol carrier protein x deficiency- DHAPAT-deficiency (RCDP Type 2)- Alkyl DHAP-synthase deficiency (RCDP Type 3)- Refsum disease- Hyperoxaluria Type 1- Acatalasaemia
NEWLY IDENTIFIED PEROXISOMAL DISORDERS
DISORDERS OF PEROXISOMAL DYNAMICS(FISSION, ELONGATION ETC)
- DLP1 deficiency (Waterham etal 2007 New Engl.J.Med. 356, 1736-1738- PEX11ß deficiency (Ebberink etal 2012 J Med Genet 2012 May;49(5):307-13 )PEX11ß deficiency (Ebberink etal 2012 J Med Genet. 2012 May;49(5):307 13 )
PEROXISOMAL DYNAMICS
ELONGATION &
CONSTRICTION
FISSION
PEX11B FIS1
DLP1
MITOCHONDRIAL DYNAMICS
FIS1DLP1
Maintenance of a functional mitochondrial tubular network is the balanced result of the opposing actions of proteins promoting mitochondrial fusion and those
promoting mitochondrial fission
MFN1MFN2OPA1
SINGLE PEROXISOMAL ENZYME DEFICIENCIES
LIST OF PEROXISOMAL DISORDERS
PEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency
Pathway affected
Zellweger spectrum disorders
D bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency-Sterol carrier protein x deficiency
- DHAPAT-deficiency (RCDP Type 2)-Alkyl DHAP-synthase deficiency (RCDP Type 3)
- Refsum disease
-Hyperoxaluria Type 1
- Acatalasaemia
Beta-oxidation
Plasmalogen biosynthesis
Alpha-oxidation
H2O2 metabolism
Glyoxylate metabolism
SINGLE PEROXISOMAL ENZYME DEFICIENCIES
LIST OF PEROXISOMAL DISORDERS
PEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency
Pathway affected
Zellweger spectrum disorders
D bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency-Sterol carrier protein x deficiency
- DHAPAT-deficiency (RCDP Type 2)-Alkyl DHAP-synthase deficiency (RCDP Type 3)
- Refsum disease
-Hyperoxaluria Type 1
- Acatalasaemia
Beta-oxidation
Plasmalogen biosynthesis
Alpha-oxidation
Glyoxylate metabolism
H2O2 metabolism
ZELLWEGER SPECTRUM DISORDERS :
ZELLWEGER SYNDROME, NEONATAL ADRENOLEUKODYSTROPHY AND INFANTILE REFSUM DISEASE
:
PHENOTYPIC VARIANTS WITH OVERLAPPING CLINICAL SIGNS AND SYMPTOMS RANGING IN SEVERITY FROM ZS TO NALD AND IRD
Common features include neurodevelopmental delay, retinopathy, perceptive deafness, and variable liver disease
IDENTIFICATION OF HUMAN PEROXISOME BIOGENESIS
GENES BY SEQUENCE SIMILARITY
CG Gifu Baltimore A’dam Gene involved
1. A 8 IX PEX26/15
2. B 7/5 XI PEX10
3. C 4/6 III PEX6
4. D 9 X PEX16
5 E 1 II PEX15. E 1 II PEX1
6. F 10 V PEX2
7. G 12 VIII PEX3
8. H 13 VII PEX13
9. J 14 XIII PEX19
10. - 2 IV PEX5
11. - 3 VI PEX12
12. - - XII PEX14
RCDP NA NA NA PEX7
ZSDs
5s
5s
19
5s
Cargobinding
Recycling
HUMAN PEROXISOME BIOGENESIS
PTS1 proteinMembrane protein
5s
14 13 102 12
6
26
1
316
Docking Import
PTS1 protein
5L
7
5L7
19
Cargobinding
Recycling
HUMAN PEROXISOME BIOGENESIS
PTS2 proteinMembrane protein
5L7
14 13 102 12
6
26
1
5L
316
Docking Import
PTS2 proteinPTS2 protein
5s
5L5s
7
5L7 19
5s
Cargobinding
Recycling
HUMAN PEROXISOME BIOGENESIS
PTS1 protein PTS2 proteinMembrane protein
14 13 102 12
6
26
1
316
Docking Import
PTS1 protein PTS2 protein
COMPLEMENTATION ANALYSIS OF PBD CELLS
Co-transfection of PEXx and GFP-SKL
Re-appearance of peroxisomes:
Defective PEXxGFP-SKL
pcDNA3 PEXx
no peroxisomes:
No defective PEXx
repeat with other PEXX cDNAs
Patient cell CG ?
GFP-SKL
+pcDNA3-PEXx
+pEGFP-SKL
COMPLEMENTATION ANALYSIS OF PBD CELLS
Co-transfection of PEXX and GFP-SKL
Patient cell + pEGFP-SKL+ pPEX1(2 days after transfection)
PEX1 not defective
Patient cell + pEGFP-SKL + pPEX1(2 days after transfection)
PEX1 defective
PBD GENETIC COMPLEMENTATION ANALYSIS
Results after analysis of 600 PBD patients (PEG + GFP-SKL)
PEX gene
1 PEX1
2 PEX2
3 PEX3
4 PEX5
Phenotype
ZS, NALD, IRD
ZS, NALD, IRD
ZS
ZS NALD IRD
Number of cell lines
355
23
2
13
Frequency (%)
59
4
0.5
24 PEX5
5 PEX6
6 PEX10
7 PEX12
8 PEX13
9 PEX14
10 PEX16
11 PEX19
12 PEX26/15
ZS, NALD, IRD
ZS, NALD, IRD
ZS, NALD
ZS, NALD, IRD
ZS, NALD
ZS
ZS, NALD
ZS, IRD
ZS, IRD
13
97
18
51
8
2
3
4
20
2
16
3
9
1
0.5
1
1
3
Data from Ebberink etal Hum Mutat. 2011 Jan;32(1):59-69
PBD GENETIC COMPLEMENTATION ANALYSIS
Results after analysis of 600 PBD patients (PEG + GFP-SKL)
PEX gene
1 PEX1
2 PEX2
3 PEX3
4 PEX5
Phenotype
ZS, NALD, IRD
ZS, NALD, IRD
ZS
ZS NALD IRD
Number of cell lines
355
23
2
13
Frequency (%)
59
4
0.5
24 PEX5
5 PEX6
6 PEX10
7 PEX12
8 PEX13
9 PEX14
10 PEX16
11 PEX19
12 PEX26/15
ZS, NALD, IRD
ZS, NALD, IRD
ZS, NALD
ZS, NALD, IRD
ZS, NALD
ZS
ZS, NALD
ZS, IRD
ZS, IRD
13
97
18
51
8
2
3
4
20
2
16
3
9
1
0.5
1
1
3
Data from Ebberink etal Hum Mutat. 2011 Jan;32(1):59-69
PEROXISOME BIOGENESIS DISORDERS AND MUTATION ANALYSIS OF THE PEX1 GENE
MUTATED IN 59% OF PBD-PATIENTSMany private mutations
Two frequently occurring mutations identified
c.2528 G>A (p.G843D)*
ll l f i ti t l ti 36%
1
- allele frequency in our patient population : 36%
- G843D substitution causes instability of Pex1p with partial reduction in function
- patients homozygous for c.2528 G A all show MILD phenotype (IRD)
c.2097_2098insT (p.I700fsX41)**
- allele frequency in our patient population : 17%
- truncated protein with full loss of Pex1p function
- patients homozygous for c.2097 insT all show SEVERE phenotype (ZS)
* Reuber etal. (1997) Nat. Genet. 17, 445-448 ; Portsteffen etal (1997) Nat. Genet. 17, 449-452
** Maxwell etal (1999) Hum. Genet 105, 38-44; Collins etal. (1999) Hum. Mutat. 14, 45-53
2
ZELLWEGER SPECTRUM DISORDERS :
ZELLWEGER SYNDROME, NEONATAL ADRENOLEUKODYSTROPHY AND INFANTILE REFSUM DISEASE
:
PHENOTYPIC VARIANTS WITH OVERLAPPING CLINICAL SIGNS AND SYMPTOMS RANGING IN SEVERITY FROM ZS TO NALD AND IRD
c.2528G>A / c.2528G>Ac.2097_2098insT / c.2097_2098insT
CATALASE IMMUNOFLUORESCENCE IN FIBROBLASTS FROM PATIENTS WITH DIFFERENT MUTATIONS IN PEX1
PEX1 p.I700fsX41 (c.2097_2098insT) PEX1 p.G843D (c.2528G>A)
0 20 40 60 80 100 120
Control
Pristanic acid ß-oxidation (%)
PRISTANIC ACID ß-OXIDATION IN FIBROBLASTS FROM PATIENTS WITH DIFFERENT MUTATIONS IN PEX1
PEX1 p.I700fsX41 (c.2097_2098insT)
PEX1 p.G843D (c.2528G>A)
37°C
EFFECT OF A SHIFT IN TEMPERATURE (37°C 30°C) ON THE NUMBER OF PEROXISOMES IN FIBROBLASTS FROM
A PATIENT HOMOZYGOUS FOR THE MILD c.2528G>A (G843D) MUTATION
37°C 30°C
Gootjes et al. HUMAN MUTATION 24:130-139 (2004)
0 20 40 60 80 100 120
Control
PEX1 p.I700fsX41 (c.2097_2098insT)
PEX1 p.G843D (c.2528G>A)
Pristanic acid ß-oxidation (%)
PRISTANIC ACID ß-OXIDATION IN FIBROBLASTS FROM PATIENTS WITH DIFFERENT MUTATIONS IN PEX1
37°C
Control
Control
40°C
37 C
30°CPEX1 p.I700fsX41 (c.2097_2098insT)
PEX1 p.G843D (c.2528G>A)
PEX1 p.I700fsX41 (c.2097_2098insT)
PEX1 p.G843D (c.2528G>A)
CONCLUSION
A shift in temperature (37°C 30°C) not only induces an increase in the number of peroxisomes but also restores the functional capacity of peroxisomes
QUESTIONIs it possible to restore peroxisome biogenesis in fibroblasts from patients homozygous for PEX1p.G843D at 37°C?
Zhang etal Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5569-74.
Screened a large library of small compounds (2080) for their capacity to restore peroxisome formation in cells homozygous for c.2528 G>A (p.G843D)
2 new compounds identified : Ro31-8220, GF109203X
PEROXISOMES IN FIBROBLASTS FROM PATIENTS WITH DIFFERENT MUTATIONS IN PEX1 AND THE EFFECT OF
GLYCEROL AND ARGININE
Untreated
Arginine 40 mM
Glycerol 5% (v/v)
PEROXISOMES IN FIBROBLASTS FROM PATIENTS WITH DIFFERENT MUTATIONS IN PEX1 AND THE EFFECT OF INCREASING CONCENTRATIONS OF ARGININE (37°C)
Glycerol and arginine but also other compounds are able to (partially) restore peroxisome formation and function (!) in cells from patients homozygous for p.G843D
CONCLUSION
CURRENT RESEARCH
Practical approach :
1. Continue on the arginine line….
2. Test arginine in vivo (mouse model!)
Fundamental approach
Resolve the folding pathway for PEX1 and identify which factors are involved
ZELLWEGER SPECTRUM DISORDERS :
ZELLWEGER SYNDROME, NEONATAL ADRENOLEUKODYSTROPHY AND INFANTILE REFSUM DISEASE
:
PHENOTYPIC VARIANTS WITH OVERLAPPING CLINICAL SIGNS AND SYMPTOMS RANGING IN SEVERITY FROM ZS TO NALD AND IRD
Common features include neurodevelopmental delay, retinopathy, perceptive deafness, and variable liver disease
Third child of non-consanguineous parents
Normal neurological examination at 14 years
At age 18, cerebellar signs with impaired gait, dysmetria, ataxia of the trunc, dysarthria, and slow saccades without oculomotor apraxia and hyporeflexia
ZELLWEGER SPECTRUM DISORDERS :
MARKED HETEROGENEITY IN CLINICAL SIGNS AND SYMPTOMS
EXAMPLE : PBD DEFECT IN A PATIENT WITH ISOLATED CEREBELLAR ATAXIA
a d s o saccades t out ocu o oto ap a a a d ypo e e a
ICARS score 17/100
No other neurological symptoms
WISC-IV analysis : full, verbal, and performance IQ were 80, 74 and 75 (normal range)
Brain MRI: isolated cerebellar atrophy at 18 years
Normal electroretinogram, peripheral nerve conduction and visual, brainstem auditory, and somatosensory evoked potentials
Molecular studies of cerebellar ataxia genes including frataxin and aprataxin : normal
Peroxisomal parameters in plasma : abnormal !
ZELLWEGER SPECTRUM DISORDERS :
A MARKEDLY HETEROGENEOUS GROUP OF DISEASES
EXAMPLE : PBD DEFECT IN A PATIENT WITH ISOLATED CEREBELLAR ATAXIA
Sevin C, Ferdinandusse S, Waterham HR, Wanders RJ, Aubourg P. Orphanet J Rare Dis. 2011 Mar 10;6:8.
ZELLWEGER SPECTRUM DISORDERS :
A MARKEDLY HETEROGENEOUS GROUP OF DISEASES
EXAMPLE : PBD DEFECT IN A PATIENT WITH ISOLATED CEREBELLAR ATAXIA
Detailed studies in fibroblasts : very mild abnormalities with the virtual normal presence of peroxisomes
Sequencing of candidate PEX genes revealed a homozygous c.865_866insA mutation in the PEX2 gene leading to a frameshift 17 codons upstream of the stop codon. PEX gene mutations usually result in a severe neurological phenotype (Zellweger spectrum disorders).
PS Similar patient with isolated cerebellar ataxia identified by Regal etal Ann Neurol. 2010 Aug;68(2):259-63
PSEUDO ZELLWEGER SYNDROME(Goldfischer etal (1986) J.Pediatr.108, 25-32)
Infant girl with the full spectrum of clinical and pathological abnormalities described for Zellweger syndrome including craniofacial dysmorphia, neuronal migration defect, etc.
Abnormal VLCFA’s and bile acid intermediates
However, abundant peroxisomes in liver parenchymal cells !
PSEUDO ZELLWEGER SYNDROME(Goldfischer etal (1986) J.Pediatr.108, 25-32)
Infant girl with the full spectrum of clinical and pathological abnormalities described for Zellweger syndrome including craniofacial dysmorphia, neuronal migration defect, etc.
Ab l VLCFA’ d bil id i t di tAbnormal VLCFA’s and bile acid intermediates
However, abundant peroxisomes in liver parenchymal cells !
2002 : Identification of true defect in this patient at the level of D-bifunctional protein
(Ferdinandusse etal (2002), Am.J.Hum.Genet. 70, 1589-1593)
PEROXISOMAL FATTY ACID ß-OXIDATION IN HUMAN PEROXISOMES AND ITS DEFICIENCIES
C26:0 pristanic acid THCA
cholesterol
CoASH
CoASH
ATP
AOX1 AOX2
DBP
pTH1 pTH2
acylCoA oxidase deficiency D-bifunctional protein deficiency
Racemase deficiency
X-ALD
ALDPracemase
KAPLAN-MEIER SURVIVAL ANALYSIS IN D-BIFUNCTIONAL PROTEIN DEFICIENCY
D-BIFUNCTIONAL PROTEIN DEFICIENCY(Ferdinandusse etal (2006), Ann.Neurol. 59, 92-104)
126 patients with D-BP deficiency identified in our laboratory
Questionnaires sent out.
Outcome :
Neonatal hypotonia
Seizures in first month of life
83/85 (98%)
79/85 (93%)
External dysmorphia
Visual system failure
Neocortical dysplasia
Liver disease
Demyelination cerebral hemispheres
Cerebellar atrophy
Early death (< 2year)
53/79 (67%)
40/73 (55%)
12/45 (27%)
18/69 (26%)
9/47 (19%)
8/49 (16%)
104/116 (90%)
PEROXISOMAL FATTY ACID ß-OXIDATION IN HUMAN PEROXISOMES AND ITS DEFICIENCIES
C26:0 pristanic acid THCA
cholesterol
CoASH
CoASH
ATP
AOX1 AOX2
DBP
pTH1 pTH2
acylCoA oxidase deficiency D-bifunctional protein deficiency
Racemase deficiency
X-ALD
ALDPracemase
Initial test PLASMA VLCFA-analysis
Abnormal
Definitely ZSD, DBP deficiency,
LABORATORY DIAGNOSIS OF THE ZELLWEGER SPECTRUM DISORDERS (ZS,NALD,IRD), D-BIFUNCTIONAL PROTEIN
DEFICIENCY AND ACYL-CoA OXIDASE DEFICIENCY
Definitely ZSD, DBP deficiency,or ACOX deficiency
Full study in fibroblasts
Biogenesis defect
Complementation analysis
DNA analysis (PEX genes)
Single enzyme defect
DBP and ACOX activity
DNA analysis
Initial test PLASMA VLCFA-analysis
Abnormal
Definitely ZSD, DBP deficiency, ZSD, DBP deficiency, or
Normal
LABORATORY DIAGNOSIS OF THE ZELLWEGER SPECTRUM DISORDERS (ZS,NALD,IRD), D-BIFUNCTIONAL PROTEIN
DEFICIENCY AND ACYL-CoA OXIDASE DEFICIENCY
Definitely ZSD, DBP deficiency,or ACOX deficiency
Full study in fibroblasts
Biogenesis defect
Complementation analysis
DNA analysis (PEX genes)
Single enzyme defect
DBP and ACOX activity
DNA analysis
ACOX deficiency not excluded
Full study in fibroblasts
Normal
ZSD, DBP deficiency,or ACOX deficiency
virtually excluded
Abnormal
PLASMA VLCFA MAY BE ENTIRELY NORMAL IN PATIENTS AFFECTED BY THE ZELLWEGER SPECTRUM DISORDERS (ZS,NALD,IRD), D-BIFUNCTIONAL PROTEIN
DEFICIENCY AND ACYL-CoA OXIDASE DEFICIENCY
Example : Rosewich etal (2006) Neuropediatrics 37, 95-98
2 Month old boy
Dysmorphic features including high forehead broad nasal bridge high archedDysmorphic features including high forehead, broad nasal bridge, high-arched palate, syndactyly (second and third toes on both feet)
Psychomotor retardation, muscular hypotonia, clonic seizures
MRI : typical pattern showing pachygyria, perisylvian polymicrogyria, cerebral and cerebellar white matter abnormalities
Retinopathy
Repetitive measurement of VLCFA’s and other peroxisomal metabolites :
NO ABNORMALITIES
Detailed studies in fibroblasts : acyl-CoA oxidase deficiency, splice-site mutation
Other examples : Soorani-Lunsing etal (2005) J.Inher.Metab.Dis. 28, 1172-1174, etc.
LIST OF PEROXISOMAL DISORDERSPEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
SINGLE PEROXISOMAL ENZYME DEFICIENCIES
Zellweger spectrum disorders
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency- Sterol carrier protein x deficiency- DHAPAT-deficiency (RCDP Type 2)- Alkyl DHAP-synthase deficiency (RCDP Type 3)- Refsum disease- Hyperoxaluria Type 1- Acatalasaemia
X-LINKED ADRENOLEUKODYSTROPHY
(XALD)
Most frequent peroxisomal disorder
Marked phenotypic heterogeneity
Two phenotypes most frequent including :p yp q g
1. Childhood cerebral ALD (CCALD)
2. Adrenomyeloneuropathy (AMN)
In all XALD phenotypes : accumulation of very-long-chain fatty acids due to their deficient oxidation in peroxisomes
Caused by mutations in the ABCD1 gene wich codes for the peroxisomal half-ABC-transporter ALDP (Mosser etal 1993, Nature 361, 726-730)
X-LINKED ADRENOLEUKODYSTROPHY
Accumulation of very-long-chain fatty acids in plasma
CONTROL
X-ALD
C26:0 (µmol/L) in plasma0 1.5 3
CONTROL
X-ALD
Activity (%)
Deficient oxidation of C26:0 in intact fibroblasts
C26:0
Acetyl-CoA
Peroxisomal ß-oxidation (? cycles)
FATTY ACID ß-OXIDATION OF C26:0 INCLUDING THE ROLE OF ALDP AND THE CROSSTALK BETWEEN MITOCHONDRIA AND PEROXISOMES
C26:0-CoA
TE
C26:0-CoA
ALDP ALDP
AcetateMedium chain
fatty acidsTE Medium chain
Acyl-CoA
Deficient in X-ALD
y
Acetyl-carnitine
Acetyl-carnitine
Krebscycle
CO2
CAT
Mitochondrion
Acetate
CAT
Peroxisome
CoASH
Medium chain Acyl-carnitine
COT
fatty acids
Medium chain Acyl-carnitine
CPT2
ß-oxidation
CoASH
Acyl CoA
Medium chain fatty acids
CACT
Medium chain Acyl-CoA
CO2
Acetyl-CoA
1 2 3 4 5 6
Matrix
Membrane
PUTATIVE SECONDARY STRUCTURE OF ALDP IN THE PEROXISOMAL MEMBRANE
Walker A
Walker B
NH2
COOH
Cytosol
C sequence
MOLECULAR ANALYSIS OF ABCD1 IN X-ALD
587 different mutations identified (http://www.x-ald.nl)
300 (51%) missense mutations
166 (28%) frame shift mutations
68 (12%) nonsense mutations
35 (6%) small insertions/deletions
18 (3%) larger deletions of one or more exons
1 2 3 4 5 6
Matrix
Membrane
PUTATIVE SECONDARY STRUCTURE OF ALDP IN THE PEROXISOMAL MEMBRANE
Arg113fs
Walker A
Walker B
NH2
COOH
Cytosol
C sequence
Asp194His
Arg660Trp
Arg554His
Glu609GlyAla616Thr
EFFECT OF TEMPERATURE ON THE AMOUNT OF ALDP PROTEIN IN FIBROBLASTS FROM PATIENTS CARRYING
DIFFERENT MISSENSE MUTATIONS IN ABCD1
EFFECT OF TEMPERATURE ON C26:0 BETA-OXIDATION IN FIBROBLASTS FROM PATIENTS CARRYING DIFFERENT
MISSENSE MUTATIONS IN ABCD1
37°C 30°C
2% → 17%0% → 0%
60% → 75%
EFFECT OF TEMPERATURE ON THE C26:0/C22:0 RATIO IN FIBROBLASTS FROM PATIENTS CARRYING DIFFERENT
MISSENSE MUTATIONS IN ABCD1
2% → 19%
1% → 12%5% → 34%
CONCLUSIONS
A shift in temperature (37°C 30°C) leads to increased amounts of ALDP in fibroblasts from some but not all patients carrying different missense mutations in ABCD1
Increased amounts of ALDP do not necessarily imply improved catalytic functioning of ALDP
CURRENT RESEARCH
Practical approach : search for compounds able to counteract misfolding of ALDP at 37°C
Fundamental approach : identification of the factors involved in folding of ALDP
LIST OF PEROXISOMAL DISORDERSPEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
SINGLE PEROXISOMAL ENZYME DEFICIENCIES
Zellweger spectrum disorders
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency- Sterol carrier protein x deficiency- DHAPAT-deficiency (RCDP Type 2)- Alkyl DHAP-synthase deficiency (RCDP Type 3)- Refsum disease- Hyperoxaluria Type 1- Acatalasaemia
Rhizomelic chondrodysplasia
punctata (RCDP)
- Growth retardation, dwarfism
- Facial dysmorphia
- Rhizomelic shortening of
upper extremities
- Severe mental retardation
MUTANT GENE : PEX7
CODES FOR THE PTS2 RECEPTOR
REQUIRED FOR THE CORRECT TARGETING OF 3 PEROXISOMALPROTEINS
PLASMALOGENS
1=peroxisomal thiolase
2=alkyl DHAP synthase
3=phytanoyl-CoA hydroxylase
PHYTANIC ACID
5L
7
5L7
19
Cargobinding
Recycling
HUMAN PEROXISOME BIOGENESIS
PTS2 proteinMembrane protein
5L7
1.Fytanoyl-CoA hydroxylase
2.Alkyl-DHAP synthase
3.Peroxisomal thiolase
14 13 102 12
6
26
1
5L
316
Docking Import
ACYLCoA
ACYLCoA
ACYLDHAP
DHAPAT
?
DHAP
CoASH
LONG-CHAIN ALCOHOL
NADPH
NADP
ACYLCoA REDUCTASE
?
PEROXISOMES AND THEIR ROLE IN PLASMALOGEN BIOSYNTHESIS
TRANSPORTTO ER
ALKYLDHAPSYNTHASE
ACYLDHAP
ALKYLDHAP
PLASMALOGENS
ERLONG-CHAINALCOHOL
FATTY ACID
PEROXISOME
ACYLCoA
ACYLCoA
ACYLDHAP
DHAPAT
?
DHAP
CoASH
LONG-CHAIN ALCOHOL
NADPH
NADP
ACYLCoA REDUCTASE
?
PEROXISOMES AND THEIR ROLE IN PLASMALOGEN BIOSYNTHESIS
RCDP type 2
TRANSPORTTO ER
ALKYLDHAPSYNTHASE
ACYLDHAP
ALKYLDHAP
PLASMALOGENS
ERLONG-CHAINALCOHOL
FATTY ACID
PEROXISOMERCDP type 3
LABORATORY DIAGNOSIS OF PEROXISOMAL
CHONDRODYSPLASIA PUNCTATA
Initial test PLASMALOGEN analysis in erythrocytes
Abnormal
Definitely RCDP type 1,2 or 3 RCDP type 1,2 or 3
Normal
Definitely RCDP type 1,2 or 3
Full study in fibroblasts
RCDP type 1
PEX7 ADHAPS
not excluded
Full study in fibroblasts
Normal
RCDP type 1,2 or 3virtually excluded
Abnormal
RCDP type 2 RCDP type 3
GNPAT
LIST OF PEROXISOMAL DISORDERS
PEROXISOME BIOGENESIS DISORDERS
- Zellweger syndrome (ZS)- Neonatal adrenoleukodystrophy (NALD)- Infantile Refsum disease (IRD)- Rhizomelic chondrodysplasia punctata (RCDP)
SINGLE PEROXISOMAL ENZYME DEFICIENCIESPathway affected
- X-linked adrenoleukodystrophy- D-bifunctional protein deficiency- Acyl-CoA oxidase deficiency- 2-Methylacyl-CoA racemase deficiency- Sterol carrier protein x deficiency- DHAPAT-deficiency (RCDP Type 2)- Alkyl DHAP-synthase deficiency (RCDP Type 3)- Refsum disease- Hyperoxaluria Type 1- Acatalasaemia
Pathway affected
Beta-oxidation
Plasmalogen biosynthesis
Alpha-oxidationGlyoxylate metabolismH2O2 metabolism
ACKNOWLEDGEMENTS
Biogenesis
Merel EbberinkHans Waterham
DNA
Hans Waterham
Clinic
Bwee-Tien Poll-ThePeter Barth
Mouse models
Pedro Brites (RCDP)Sacha Ferdinandusse
(Refsum)Stephan Kemp
(XALD)
Metabolism
Sacha FerdinandusseRies DuranWim Kulik
Nico Abeling