enhanced hospital-based surveillance of ......1 institute of public health of vojvodina, novi sad,...

1
Site presentation ENHANCED HOSPITAL - BASED SURVEILLANCE OF INFLUENZA AND OTHER RESPIRATORY VIRUSES IN THE AUTONOMOUS PROVINCE OF VOJVODINA , S ERBIA , 2017 - 2018 Methods Results Snežana Medić 1,2 , Mioljub Ristić 1,2 , Vesna Milošević 1,2 , Jelena Radovanov 1 , Vladimir Petrović 1,2 1 Institute of Public Health of Vojvodina, Novi Sad, Serbia, 2 Faculty of Medicine, University of Novi Sad, Novi Sad, Serbia Key aspects & challenges Fig 2 : Influenza virus positive patients by infuenza virus type&subtype , Vojvodina, Serbia, 2017-2018 Fig 5. Influenza virus type&subtype by patients age group (%) n=274 Surveillance is implemented in cooperation of the Institute of Public Health of Vojvodina (IPH) and four tertiary care (study) hospitals (total capacity 954 beds: 350 for pediatric and 604 for adults). Study hospitals regularly admit patients with severe acute respiratory disease from nine general hospitals throughout Vojvodina province, Serbia. Catchment area is equal to the population of the Autonomous Province of Vojvodina: 1,931,809 people (≈27% of Serbian population)(Fig.1). We present hospital based surveillance data for the influenza season 2017-2018 in the study area corresponding to the GIHSN site in Vojvodina, Serbia, calendar weeks 40 (2017) -20 (2018). FIG.1 MAP OF EUROPE, SERBIA AND VOJVODINA PROVINCE WITH LOCATIONS OF THE STUDY AND GENERAL HOSPITALS Four study hospitals Nine General hospitals Study design: Multi-centre, prospective, active surveillance. Inclusion&exclusion criteria: according to GIHSN Protocol. Specific questionnaire for eligible patients of all ages was filled on the spot by health care worker. Sample collection: according to GIHSN Protocol. Samples were transported in UTM and tested within 48 hours in the virology laboratory of IPH of Vojvodina. Molecular diagnostics: Swab samples were tested for the presence of influenza virus type A; and subtypes A (H1N1)pdm09 and (H3N2) and influenza virus type B (with further determination of B/Yamagata and B/Victoria lineages) using real-time RT-PCR assays. Reverse transcription and amplification were performed using one-step AgPath ID TM One-Step RT-PCR Reagents and oligonucleotide primers and probes (CDC, USA). All influenza negative samples of the patients with acute respiratory distress syndrome (ARDS) and severe acute resiratory infection (SARI) were tested for the presence of other respiratory viruses (MERS-CoV, human meta pneumovirus, human parainfluenza viruses 1, 2, 3 and 4, human rhinovirus, adenoviruses, boka virus and respiratory syncytial virus). Data analysis: A descriptive analysis of the obtained results was conducted with aim to evaluate the burden of severe influenza disease among hospitalized patients in study hospitals in Vojvodina. Patient's status n % Screened 2366 100 Eligible 1808 76.4 Included 636 26.9 Influenza virus positive 274 11.6 Other respiratory viruses positive 29 1.2 17 9 33 19 21 8 18 6 5 5 75 73 61 73 71 100 1 3 < 5 5-<18 18-<45 45-<65 65-<80 80+ % AGE GROUP A/H1N1 B-Not Subtyped B/Yamagata Mixed A/H3N2 A-Not Subtyped n=198 n=54 n=15 5 1 1 B/Yamagata A/H1N1 B-Not Subtyped Mixed A-Not Subtyped A/H3N2 Table 1. Screening, eligibility, inclusion and laboratory test results, Serbian GIHSN site, 2017-2018 Fig 3 : Influenza virus distribution by calendar week, Vojvodina, Serbia, 2017-2018 81 32 1 5 66 25 1 5 24 10 0 1 0 20 40 60 80 100 120 140 160 B/Yamagata A/H1N1pdm09 A H3N2 B-not subtyped Number of cases Influenza viru type&subtype ICU admission Mechanically ventilated Death outcome Fig 4. Influenza hospital-related burden in Vojvodina by virus type&subtype, Serbia,2017-2018 Total n Influenza negative n (%) Influenza positive n (%) Respiratory virus infections n (%) ICU admission 257 122 (47.5%) 119 (46.3%) 16 (6.2%) Mechanically ventilated 209 98 (46.9%) 97(46.4%) 14 (6.7%) Death outcome 75 36 (48.0%) 37 (49.3%) 2 (2.7%) Hospitalized patients in study hospitals (overall in the influenza season 2017-2018) Total Community acquired influenza (GIHSN) In-hospital acquired influenza Influenza severity ILI SARI ARDS Tested n (%) 899 636 (70.7) 263 (29.3) 593 210 96 Influenza positive n (%) 393 274 (69.7) 119 (30.3) 260 (43.8) 94 (44.8) 39 (40.6) Table 3. Influenza hospital related burden in Vojvodina, Serbia,2017-2018 0 5 10 15 20 25 30 35 40 45 50 Number of cases Calebendar week A/H1N1 A/H3N2 A-Not Subtyped B/Yamagata B-Not Subtyped Mixed Influenza virus activity in Vojvodina (all types of surveillance) lasted from week 50, 2017, to week 15, 2018. Outbreak of influenza lasted from 4 th until 7 th calendar week with the highest incidence of ILI recorded in the 5 th calendar week of 2018. Epidemic curve that present hospitalized patients according to GIHSN criteria, follow the similar pattern (Fig. 3) Dedicated hospital-based surveillance for severe influenza (SARI/ARDS) has been conducted since 2010/11 in all hospitals in Vojvodina. Under the auspices of GIHSN, enchanced hospital-based surveillance was introduced in the influenza season 2017-2018, additionaly involving community- acquired infuenza-like-illness (ILI) at the hospital admission, according to GIHSN criteria. Data on the number of screened, eligible, tested and laboratory-confirmed influenza cases are shown in Table 1. Virological results by influenza virus type&subtype are presented in Fig. 2. There were no significant differences between the influenza virus positive and negative patients in terms of the ICU utilitization, mechanical ventilation or in-hospital death (Table 2, Fig. 4). Table 2: Influenza hospital-related burden in Vojvodina, Serbia,2017-2018 . Key aspects: The distribution of influenza virus types&subtypes, timing and peak of the influenza season obtained though the GIHSN and national surveillance were similar. The circulation pattern of influenza virus was characterized by the strong predominance of the influenza virus type B-Yamagata lineage (72,3%) followed by influenza virus type A(H1N1)pdm09 (19,7%) and negligible share of undifferentiated A and B influenza virus types. Influenza virus type B-Victoria lineage was not established among included patients. Other respiratory viruses have been confirmed in only 4,6% of all hospitalized and tested GIHSN patients in Vojvodina, Serbia. High share of influenza associated deaths (37) and ICU admissions observed in the last season may be explained by older age of patients and co-morbidities as well as criteria for admission to ICU in the study hospitals. In the majority of deceased patients (65%) influenza virus subtype B Yamagata lineage was confirmed. Most influenza related deaths (38%) were recorded in the second half of February. The majority of flu-related hospitalizations were recorded in elderly patients aged +65 years with the highest burden among those aged +80 years and patients with cardiovascular and chronic obstructive pulmonary disease. At the time of hospital admission, ≈2/3 of all tested and laboratory confirmed cases of influenza were presented as ILI and ≈≈1/3 as SARI or ARDS. Pneumonia was commonly registered among influenza positive hospitalized patients. The negligible share of included patients (27/636) was vaccinated (4.4% of LCI + 4.3% of LCI-). Virus influenzae type B, Yamagata lineage was confirmed in the majority (10/12) of influenza virus positive vaccinated patients. Significant vaccine vs. circulating influenza virus type B lineage antigenic mismatch was established in the influenza season 2017-2018, highlighting the importance of quadrivalent influenza vaccine introduction in Serbia. Conclusion :Community-acquired influenza was the main trigger for increased hospitalizations, ICU admissions and deaths, especially in elderly patients with comorbidities. Enhanced hospital-based surveillance has increased the number of screened and tested patients, compared to the previous influenza seasons and allow better understanding of influenza related hospital disease burden in Vojvodina, Serbia. Challenges: Influenza vaccine coverage rates need to be increased. Lack of data on infuenza vaccine effectivenes in Serbia, mainly due to the low national influenza immunization coverage (3,3%). The high share of influenza- related hospitalizations, including ICU admissions and substantial mortality during influenza season, pose additional challenges. Contact: Snežana Medić, MD, PhD snezana.medic @mf.uns.ac.rs snezana.medic @izjzv.org.rs Funding: Foundation for influenza epidemiology and Institute of Public Health of Vojvodina, Novi Sad Serbia We also present age-dependent struture of different influenza strains (Fig. 5). Infuenza disease severity and ratio of community-acquired vs. hospitaly- acquired ILI among hospitalized patients are shown in Table 3.

Upload: others

Post on 18-Jan-2021

3 views

Category:

Documents


0 download

TRANSCRIPT

Page 1: ENHANCED HOSPITAL-BASED SURVEILLANCE OF ......1 Institute of Public Health of Vojvodina, Novi Sad, Serbia, 2Faculty of Medicine, University of Novi Sad, Novi Sad, Serbia Key aspects

Site presentation

ENHANCED HOSPITAL-BASED SURVEILLANCE OF INFLUENZA AND OTHER RESPIRATORY VIRUSESIN THE AUTONOMOUS PROVINCE OF VOJVODINA, SERBIA, 2017-2018

AUTHORS INFORMATION

Methods

Results

Snežana Medić1,2, Mioljub Ristić 1,2, Vesna Milošević 1,2, Jelena Radovanov 1, Vladimir Petrović 1,2

1 Institute of Public Health of Vojvodina, Novi Sad, Serbia, 2Faculty of Medicine, University of Novi Sad, Novi Sad, Serbia

Key aspects & challenges

Fig 2 : Influenza virus positive patients by infuenza virus type&subtype , Vojvodina, Serbia, 2017-2018

Fig 5. Influenza virus type&subtype by patients age group (%) n=274

Surveillance is implemented in cooperation of theInstitute of Public Health of Vojvodina (IPH) and fourtertiary care (study) hospitals (total capacity 954 beds:350 for pediatric and 604 for adults). Study hospitalsregularly admit patients with severe acute respiratorydisease from nine general hospitals throughoutVojvodina province, Serbia. Catchment area is equal tothe population of the Autonomous Province ofVojvodina: 1,931,809 people (≈27% of Serbianpopulation)(Fig.1). We present hospital basedsurveillance data for the influenza season 2017-2018 inthe study area corresponding to the GIHSN site inVojvodina, Serbia, calendar weeks 40 (2017) -20 (2018). FIG.1 MAP OF EUROPE, SERBIA AND

VOJVODINA PROVINCE WITH LOCATIONS OF

THE STUDY AND GENERAL HOSPITALS

Four study

hospitals

Nine General

hospitals

Study design: Multi-centre, prospective, active surveillance. Inclusion&exclusion criteria:according to GIHSN Protocol. Specific questionnaire for eligible patients of all ages was filled onthe spot by health care worker. Sample collection: according to GIHSN Protocol. Samples weretransported in UTM and tested within 48 hours in the virology laboratory of IPH of Vojvodina.Molecular diagnostics: Swab samples were tested for the presence of influenza virus type A; andsubtypes A (H1N1)pdm09 and (H3N2) and influenza virus type B (with further determination ofB/Yamagata and B/Victoria lineages) using real-time RT-PCR assays. Reverse transcription andamplification were performed using one-step AgPath IDTM One-Step RT-PCR Reagents andoligonucleotide primers and probes (CDC, USA). All influenza negative samples of the patients withacute respiratory distress syndrome (ARDS) and severe acute resiratory infection (SARI) weretested for the presence of other respiratory viruses (MERS-CoV, human meta pneumovirus,human parainfluenza viruses 1, 2, 3 and 4, human rhinovirus, adenoviruses, boka virus andrespiratory syncytial virus). Data analysis: A descriptive analysis of the obtained results wasconducted with aim to evaluate the burden of severe influenza disease among hospitalizedpatients in study hospitals in Vojvodina.

Patient's status n %

Screened 2366 100

Eligible 1808 76.4

Included 636 26.9

Influenza virus positive 274 11.6

Other respiratory viruses positive 29 1.2

179

3319 21

8 18

6

5 5

75 7361

73 71

100

1 3

< 5 5-<18 18-<45 45-<65 65-<80 80+

%

AGE GROUP

A/H1N1 B-Not Subtyped B/Yamagata Mixed A/H3N2 A-Not Subtyped

n=198

n=54

n=15 5

1 1

B/Yamagata

A/H1N1

B-Not Subtyped

Mixed

A-Not Subtyped

A/H3N2

Table 1. Screening, eligibility, inclusion and laboratory test results, Serbian GIHSN site, 2017-2018

Fig 3 : Influenza virus distribution by calendar week, Vojvodina, Serbia, 2017-2018

81

32

1

5

66

25

1

5

24

10

0

1

0 20 40 60 80 100 120 140 160

B/Yamagata

A/H1N1pdm09

A H3N2

B-not subtyped

Number of cases

Infl

ue

nza

vir

u t

ype

&su

bty

pe

ICU admission Mechanically ventilated Death outcome

Fig 4. Influenza hospital-related burden in Vojvodina by virus type&subtype, Serbia,2017-2018

Totaln

Influenza negativen (%)

Influenza positiven (%)

Respiratoryvirus infections

n (%)

ICU admission 257 122 (47.5%) 119 (46.3%) 16 (6.2%)

Mechanically ventilated 209 98 (46.9%) 97(46.4%) 14 (6.7%)

Death outcome 75 36 (48.0%) 37 (49.3%) 2 (2.7%)

Hospitalized patients

in study hospitals

(overall in the influenza

season 2017-2018)

Total

Community

acquired

influenza

(GIHSN)

In-hospital

acquired

influenza

Influenza severity

ILI SARI ARDS

Tested n (%) 899 636 (70.7) 263 (29.3) 593 210 96

Influenza positive

n (%)393 274 (69.7) 119 (30.3)

260

(43.8)

94

(44.8)

39

(40.6)

Table 3. Influenza hospital related burden in Vojvodina, Serbia,2017-2018

0

5

10

15

20

25

30

35

40

45

50

Nu

mb

er

of

case

s

Calebendar week

A/H1N1 A/H3N2 A-Not Subtyped B/Yamagata B-Not Subtyped Mixed

Influenza virus activity in Vojvodina (all types of surveillance) lasted from week 50, 2017, toweek 15, 2018. Outbreak of influenza lasted from 4th until 7th calendar week with the highestincidence of ILI recorded in the 5th calendar week of 2018. Epidemic curve that presenthospitalized patients according to GIHSN criteria, follow the similar pattern (Fig. 3)

Dedicated hospital-based surveillance for severe influenza (SARI/ARDS) has been conducted since2010/11 in all hospitals in Vojvodina. Under the auspices of GIHSN, enchanced hospital-basedsurveillance was introduced in the influenza season 2017-2018, additionaly involving community-acquired infuenza-like-illness (ILI) at the hospital admission, according to GIHSN criteria. Data on thenumber of screened, eligible, tested and laboratory-confirmed influenza cases are shown in Table 1.Virological results by influenza virus type&subtype are presented in Fig. 2.

There were no significant differences between the influenza virus positive and negativepatients in terms of the ICU utilitization, mechanical ventilation or in-hospital death (Table 2,Fig. 4).Table 2: Influenza hospital-related burden in Vojvodina, Serbia,2017-2018.

• Key aspects: The distribution of influenza virus types&subtypes, timing and peak of theinfluenza season obtained though the GIHSN and national surveillance were similar. Thecirculation pattern of influenza virus was characterized by the strong predominance of theinfluenza virus type B-Yamagata lineage (72,3%) followed by influenza virus typeA(H1N1)pdm09 (19,7%) and negligible share of undifferentiated A and B influenza virus types.Influenza virus type B-Victoria lineage was not established among included patients. Otherrespiratory viruses have been confirmed in only 4,6% of all hospitalized and tested GIHSNpatients in Vojvodina, Serbia.

• High share of influenza associated deaths (37) and ICU admissions observed in the last seasonmay be explained by older age of patients and co-morbidities as well as criteria for admissionto ICU in the study hospitals. In the majority of deceased patients (65%) influenza virussubtype B Yamagata lineage was confirmed. Most influenza related deaths (38%) wererecorded in the second half of February.

• The majority of flu-related hospitalizations were recorded in elderly patients aged +65 yearswith the highest burden among those aged +80 years and patients with cardiovascular andchronic obstructive pulmonary disease. At the time of hospital admission, ≈2/3 of all testedand laboratory confirmed cases of influenza were presented as ILI and ≈≈1/3 as SARI or ARDS.Pneumonia was commonly registered among influenza positive hospitalized patients.

• The negligible share of included patients (27/636) was vaccinated (4.4% of LCI + 4.3% of LCI-).Virus influenzae type B, Yamagata lineage was confirmed in the majority (10/12) of influenzavirus positive vaccinated patients. Significant vaccine vs. circulating influenza virus type Blineage antigenic mismatch was established in the influenza season 2017-2018, highlightingthe importance of quadrivalent influenza vaccine introduction in Serbia.

• Conclusion:Community-acquired influenza was the main trigger for increased hospitalizations,ICU admissions and deaths, especially in elderly patients with comorbidities. Enhancedhospital-based surveillance has increased the number of screened and tested patients,compared to the previous influenza seasons and allow better understanding of influenzarelated hospital disease burden in Vojvodina, Serbia. Challenges: Influenza vaccine coveragerates need to be increased. Lack of data on infuenza vaccine effectivenes in Serbia, mainly dueto the low national influenza immunization coverage (3,3%). The high share of influenza-related hospitalizations, including ICU admissions and substantial mortality during influenzaseason, pose additional challenges.

Contact: Snežana Medić, MD, [email protected]@izjzv.org.rs

Funding: Foundation for influenza epidemiology and Institute of Public Health of Vojvodina, Novi Sad Serbia

We also present age-dependent struture of different influenza strains (Fig. 5).Infuenza disease severity and ratio of community-acquired vs. hospitaly- acquired ILIamong hospitalized patients are shown in Table 3.