Mot

if

Gro

up S

peci

ficity

Gro

up S

peci

ficity

Ran

k

Site

Spe

cific

ity

Site

Spe

cific

y R

ank

Test

set S

ites

Aver

age

Test

set S

ites

StD

ev T

ests

et S

ites

TRA

NSF

AC

Cor

rela

tion

TRA

NSF

AC

ID

Mot

if Fi

nder

s

Sets

Rep

eats

Logo

1 8.70e-016 1 1.90e-014 1 8 0.73 0.65 AA 1, 4 GA

TCG GATCGATGCATCGG

CA

ACG C

GGA

TCAGT

A GCCC

ACGC

AACG

AGCA

GTCAGA

CTG

2 6.10e-013 4 2.80e-012 2 5 0.45 0.52 AA 2, 3, 4, 5 PAL AGA

GA

AGCCG

AGGC

GTCC

GTGC

TCA A

GGA

CTG

ACTT

CCA3 1.50e-012 6 1.40e-011 3 6 0.55 0.52 BP, MD, ME 1, 2, 3, 5 G

AAGG

ACGTC

GAGG

CGT

CAGC

GTC

AG

CAG

4 1.70e-011 8 3.40e-010 7 11 1.00 1.20 AA, BP 1, 2, 3, 4, 5 PAL AG

TAG

AGTAGCACGTATCGTC

AG

ACG

ACG C

GGCAGC

AG

AG

GCA

TGC

TAG

AGCG

CCTG

ACATGCG

CATGCA

GAGC

5 1.90e-011 9 1.60e-010 2 10 0.91 1.00 AA 2, 5 PAL,TR CG

AG

CG

TG

AGCTCGAGG GC

GATGC

ACG

ACG

ACG

AGC

TCG

CTGAGCTG

TCAGTC

CATGATCG T

GC

ATGCC A

TGG

CGC A

C CG

6 2.40e-011 10 6.40e-011 2 4 0.36 0.50 AA 1, 2, 3, 4, 5 PAL,TR AACAG

ACA

AGCCT

AACG

TCG

TGAT

AACAGAC C

ACAGCT

AG7 2.70e-011 12 2.40e-010 6 8 0.73 0.79 AA, ME 1, 2, 3, 4, 5 PAL,TR C

GACG G

AGGC

TAGGC

GTA C

G GCGG

CTGCCG

AC

GCA

ATG

8 8.50e-011 15 1.70e-009 11 10 0.91 0.94 AA 2, 3, 5 PAL,TR TAG

TCG

ACGG

CATCG

ATG

CGA

GACGTCAGG

ACG

CGTGACT

GATCG

TCGTCAGA

GCG

CATCG

GC

TAGC

GCAG

AC

9 8.60e-011 16 4.00e-010 8 6 0.55 0.69 AA, ME 1, 3, 4, 5 TGCT

CATGCT

GAG

GCAA

GAGTGT

AGCCC

AACG

GAT

CG

10 2.00e-010 18 5.40e-010 4 5 0.45 0.69 AA, ME 2, 4, 5 TR TA

CTA

GATT

GGCAAA

GACAGG

AAG G

TGGCT

CCG

ACG

11 3.30e-010 19 8.90e-010 5 5 0.45 0.69 AA, BP, MD 1, 2, 3, 4, 5 PAL GCA

TAGAAG

CACA

GGC

CA

AG

TGCA

CCGCA

TG GT

G

12 3.30e-010 19 8.90e-010 5 6 0.55 0.82 AA 1 GACG

TGCT

CAGCC

TGAGC A

TGTG

TGT

GA

AG

GAGA

C

13 3.90e-010 21 7.60e-009 7 13 1.20 1.30 AA, MD 1, 3, 4, 5 PAL CGTC

TG

ACTT

GTGG

CGTC GT

GATCG

ACG

TGCTACGA

GAGC

G

14 7.80e-010 22 2.10e-009 6 4 0.36 0.50 AA, BP 2, 3, 4, 5 TR GCCA

GG GAGCGT

CGGGA

GCTGCT

AGTGCA

GCGGA

TC

ATGGG

15 8.10e-010 23 1.50e-008 9 10 0.91 0.94 AA 1 PAL,TR CG

ACG

TCGG

C GCGTACG

AGTC

TCTG

CG

ATGC

ACG G

CTCAT

GCGTC

GAGT

CTGC

16 1.70e-009 25 3.00e-009 7 5 0.45 0.93 AA, ME 1, 2, 3, 4, 5 GGA

TACAT

CACGGT

CGACCAGA

CAGC

CGGAGT

C

17 5.10e-009 29 2.20e-007 12 14 1.30 1.40 AA 1, 4 PAL,TR GCG

ATGC

GGTCAA

GTAGCA

GTAG

ATCGA

GACGATCGTGACC

GCG

TACTACGA

GC

ACTGATGCG

CTAGC

ATCG G

18 7.50e-009 30 3.40e-008 7 7 0.64 0.92 AA, ME 2 PAL AAT

GCTG

AAG

ACGG

ACA

TCAG

CGTCA

GTGCCT

GC

19 1.10e-008 31 2.00e-007 11 7 0.64 0.50 AA, ME 2, 3, 4, 5 CTA

TAT G

AT

GACG

AGAGA

20 2.20e-008 32 9.10e-007 15 13 1.20 0.98 AA, ME 1, 2, 3, 4, 5 PAL GAGTACTGC

TACTGG

TGC

TC

GTCGGC

G

21 2.40e-008 33 2.00e-007 13 9 0.82 0.87 AA, BP 1, 2, 3, 4, 5 TR TG

CTT

CATGC TT

GGACTG T

CGTGG

T

22 2.80e-008 34 1.10e-006 16 18 1.60 2.10 AA 2 PAL,TR CGTAGCTACGA

GC

TAGC

AGT

CTG

TAGCATCGT

GATCGC

GAG

TCAG

TAG

TCG

CTG GT

GACG

CTGAC

GCAG

ACG

23 2.90e-008 35 1.10e-006 16 16 1.50 1.40 AA 2 PAL,TR TAG

CG

ATGCCAGT

ACG

AG

TGC

CTGATCG

ATCG

ATCG

TACG

ATCGC

GATGC

ATG

CTG

AGC

ATGCT

GC

CG

TGCT

GATGC

ATC

GCG

24 6.30e-008 36 6.30e-006 22 11 1.00 0.63 BP 1, 2, 4 TG

ACG

CGTA

TAG

AGTGA

GT

CGA

TCAG

AGG

CTGC

GTA

TG

25 9.30e-008 37 1.70e-007 10 5 0.45 0.93 AA 2, 5 TCGG

AGCA

CAC

GA

ATC

CGTC

GAT CC

AAGCAC

AAGCA

CCAA

T

26 6.90e-007 41 1.80e-006 18 8 0.73 1.50 AA, BP 3 AG

ACGC

GATGC A

GATCGA

GTAGC

AAG

CG

TG

AG

AGC GA GG

C AG

CG

27 1.30e-006 44 9.30e-006 19 10 0.91 1.10 BP, MD 2, 5 PAL CG

AGCG

AAGG

CGACC

GCG

CG

TCGC

TCA

AC

AGC

GCG

A

28 3.00e-006 45 2.00e-005 20 10 0.91 1.00 AA 5 AG A AG

TC

GTA

TGCC

ACA

TACAG

AAGCT C

AACA

C

29 1.20e-005 49 7.40e-005 30 12 1.10 1.20 BP, MD 2, 3, 4 TCG

TA

AG

AGCTGG

AT

TGCT

CACGTCAGC

AGC

GACTACGA

CG

ATG

AGC

G

30 1.50e-005 52 1.60e-004 33 8 0.73 0.65 BP 2 TG

TGC

TAG

GT

TGC

TAC

TGC

TCAA

GAT

TG

AGTT

GCT

CG

GTAA

G

31 2.10e-005 53 2.10e-004 25 15 1.40 1.60 AA 3, 5 TR TG

ATC C

G TGATCGT

GA

TCG

ATGC

CAG

AG

TCG

CG

ACG

TGC

GAGTACG

TCGATCAGT

G

32 2.80e-005 54 6.90e-005 23 12 1.10 2.20 AA 1, 2 PAL CG

ACATCGATCG T

GGTAC

AGT

ACGATCGA

GC

TGCG

CATCGATGCAT

GC

AGC

TGC G

CTACGA

GGC

GC

ACT

TGA

GG33 3.50e-005 56 2.10e-004 29 10 0.91 1.20 AA, MD, ME 1, 2, 3, 4, 5 G

TCG

GA

ACGCAT

GCTAC

GCTAA

G

34 4.10e-005 57 2.40e-004 35 13 1.20 1.30 MD 2, 4, 5 PAL TA

ATG

AGT

CG

ACTGG

CACTG

AGATGC

GC

TGCAGTACA

T35 5.30e-005 58 8.70e-004 37 12 1.10 0.94 BP 2 PAL T

GCTG

ACTG

TAGG

ACGACTGA

CCG

TG

ATC

TCGC

TAGTC

CTG