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[CANCER RESEARCH 51. 1460-1464. March I. I99I| Interstitial Chromosomal Deletion within 4qll-ql3 in a Human Hepatoma Cell Line1 Yoshio Urano,2 Kazutada VVatanabe/ C. C. Lin, Okio Hiño, and Taiki Tamaoki4 Department of Medical Biochemistry. L'nirersity of Calgary, Colgar); Alhena T2.\ 4,\I, Canada />'. Õ'..A'. H'., T. T./; Department of Pathology anil Lahoraton- Medicine, I'niveraitr of Alberta, Edmonton, Alhena TMi 2R7, Canada /('. C. L.J; and Department o/ 'Pathology. Cancer Institute. Toshimu-ku, Tokyo 170, Japan /(). li.J ABSTRACT Southern blot analysis revealed the presence of an aberrant albumin gene as »ellas a normal one in a human hepatoma cell line, Ilui 1-7. A genomic sequence carrying this altered gene was isolated and character ized. This clone contains a 3-kbp 3' segment of the albumin gene linked to a non-albumin sequence at intron 11. The non-albumin sequence is assigned to chromosome 4q 12-q 13 by in situ hybridization. I his indicates an interstitial deletion of a chromosomal segment within 4qll-ql3 be cause the albumin gene is mapped there. The truncated albumin gene is detected in an early passage of Mull-" cells and has been maintained stably in cell culture. INTRODUCTION HCC* is a common adult tumor in regions of the world where persistent HBV infection is endemic. HBV infection has been found to be an important risk factor for HCC (1) although the exact mechanism by which HBV acts in carcinogenesis remains unclear (2, 3). Activated cellular oncogenes in various human tumors have been detected by DNA-mediated transfection as says using NIH 3T3 mouse fibroblasts (4, 5). An oncogene activated in common among HCCs has not been determined, although three types of sequences capable of inducing malignant transformation in mouse cells have been isolated from human primary HCCs (6-10). A variety of human tumors are also characterized by specific chromosomal deletions, suggesting that loss of tumor suppres sor loci (antioncogenes) is important in the pathogenesis of these malignancies (11). Recent studies have detected loss of heterozygosity of restriction fragment length polymorphisms in HCCs as well. The allelic loss in HCCs has been reported for loci on chromosomes 4q, 1Ip, 13q, 16q, and 17p (12-16), and the possible presence of a suppressor gene for HCC has been suggested on chromosome 4q (14). In humans, the albumin and AFP genes are present in tan dem, about 14.5 kbp apart, on chromosome 4ql l-ql3 (17, 18). We have been studying the structure and regulation of these genes in a human hepatoma cell line, HuH-7 ( 19). In this paper, we show that the albumin gene is rearranged in this cell line. We isolated and characterized a genomic clone carrying the aberrant albumin gene. The results revealed an interstitial dele tion of a chromosomal segment within 4qll-ql3, supporting Received 10/4/90: accepted 12/19/90. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accordance with 18 t!.S.C. Section 1734 solely to indicate this fact. 1This work was supported b> the National C'aneer Institute of C'anada. the Medical Research Council of Canada, and Japan Inumino Research Laboratory. Inc. • Present address: Department of Dermatology. University of Tokushima. Tokushima 770. Japan. ' Present address: Department of Biochemical I.ngineering and Science. Kyu shu Institute of Technology, li/nk.i. Fukuoka 820. Japan. 4 Tt) whorn requests for reprints should be addressed, at Department ot Medical Biochemistry. University of Calgary. Calgary. Alberta T2N 4NI. C'anada. 5 The abbreviations used are: HCC'. hepatocellular carcinoma: AFP. n-fctopro- tein; IIBV. human hepatitis B \irus: kbp. fcilobase pairs: cDNA. complementan DNA. the possibility that a tumor suppressor locus is present near the albumin gene. MATERIALS AND METHODS Cells. A human hepatoma cell line, HuH-7 (kindly supplied by Drs. J. Sato and H. Nakabayashi. University of Okayama, Japan), was maintained in a serum-free medium (19). HuH-7 DNA was extracted from cells of 50 passages and 990 culture days, unless otherwise noted, or 13 passages and 263 culture days, when described as in an early stage. DNA from a human B-lymphoblastoid cell line. 6.1.6 (20), was used as a control. Four subclones of the HuH-7 cell line were isolated at 55 passages and 1095 culture days. Albumin cDNA and Genomic Clones, phalb-7. a human albumin cDNA clone, and XHAL-H14, a human albumin genomic clone, are described elsewhere (18, 21). AHAL-4WU. a genomic clone carrying a rearranged human albumin gene, was isolated from a genomic library constructed from a partial I-~ct>Rldigest of HuH-7 DNA. Various restriction fragments of the genomic clones were subcloned into pBR322 for further analysis. pHAL-H14-Hind6.0 is a subclone of a 6.0-kbp Hindlll fragment of AHAL-H14. pHAL-4Vv U-Ecol.5 and pHAL-4\VU-Eco7.5 are subclones of 1.5-and 7.5-kbp Ea>R\ fragments of XHAL-4WU, respectively. Heteroduplex Analysis. The 7.5-kbp EcoRl fragment (0.1 ¿ig)of pHAL-4WU-Eco7.5 was labeled at the 5' end with (^-"PjATP using T4 polynucleotide kinase (Bethesda Research Laboratories), mixed with either the 6.0-kbp //indi 11 fragment (2 ^g) of pHAL-H14-Hind6.0 or sheared salmon sperm DNA (2 *jg), denatured in 0.3 M NaOH and 1 HIMEDTA at 37°Cfor 15min, neutralized with HC1. and kepi at room temperature overnight. The mixture was treated with mung bean nu- clease (Pharmacia) in 30 niM sodium acetate (pH 4.8), 50 niM NaC'l, I mM ZnCN. 5rr glycerol. and denatured salmon sperm DNA (200 ^g/ ml). The protected fragment was recovered by ethanol precipitation and analyzed on a 1 alkaline agarose gel. Southern Blot Analysis. Southern blot hybridization (22) was carried out at 65°Covernight in 50 mM Tris-HCl (pH 8.0), 1 M NaCI, 10 mM EDTA, 0.l'i sodium dodecyl sulfate and 10 x Denhardt's solution (23) containing a probe labeled with [«-"PJdCTP by the "oligo-label- ing" method (24) after prchybridization in 3 x 0.15 M NaCl-0.015 M sodium citrate and IO x Denhardt's solution for 2 h. Washing was done in 0.2 x 0.15 M NaCl-O.OI5 M sodium citrate and 0.1% sodium dodecyl sulfate at 65°C. In Situ Hybridization. The 1.5-kbp £ioRl fragment of pHAL-4WU- Ecol.5 was labeled to a specific activity of 10*cpm/^g with |'H] dCTP and ['HjdATP by the "oligo-labeling" method (24) and used as a probe. Chromosome preparation, in situ hybridization, and chromosome iden tification were performed according to the procedure of Lin et al. (25). DNA Sequencing. DNA sequence was determined by the procedure of Maxam and Gilbert (26). RESULTS Detection of an Aberrant Albumin Gene Sequence in HuH-7. Southern blot analyses of £foRI digests of human liver and 6.1.6 human B-lymphoblastoid cell DNAs using a human al bumin cDNA. phalb-7, as a probe revealed two bands 10 kbp and 1.5 kbp long (Fig. 1, Lanes 2 and 3). Similar analysis of HuH-7 human hepatoma cell DNA detected three bands, a 7.5- kbp band in addition to the two bands described above (Fig. 1, 1460 on June 5, 2020. © 1991 American Association for Cancer Research. cancerres.aacrjournals.org Downloaded from

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Page 1: Interstitial Chromosomal Deletion within 4qll-ql3 in a ... · 1This work was supported b> the National C'aneer Institute of C'anada. the Medical Research Council of Canada, and Japan

[CANCER RESEARCH 51. 1460-1464. March I. I99I|

Interstitial Chromosomal Deletion within 4qll-ql3 in a Human HepatomaCell Line1

Yoshio Urano,2 Kazutada VVatanabe/ C. C. Lin, Okio Hiño,and Taiki Tamaoki4

Department of Medical Biochemistry. L'nirersity of Calgary, Colgar); Alhena T2.\ 4,\I, Canada />'. Õ'..A'. H'., T. T./; Department of Pathology anil Lahoraton-Medicine, I'niveraitr of Alberta, Edmonton, Alhena TMi 2R7, Canada /('. C. L.J; and Department o/ 'Pathology. Cancer Institute. Toshimu-ku, Tokyo 170,

Japan /(). li.J

ABSTRACT

Southern blot analysis revealed the presence of an aberrant albumingene as »ellas a normal one in a human hepatoma cell line, I lui 1-7. Agenomic sequence carrying this altered gene was isolated and characterized. This clone contains a 3-kbp 3' segment of the albumin gene linked

to a non-albumin sequence at intron 11. The non-albumin sequence isassigned to chromosome 4q 12-q13 by in situ hybridization. I his indicatesan interstitial deletion of a chromosomal segment within 4qll-ql3 because the albumin gene is mapped there. The truncated albumin gene isdetected in an early passage of Mull-" cells and has been maintained

stably in cell culture.

INTRODUCTION

HCC* is a common adult tumor in regions of the world where

persistent HBV infection is endemic. HBV infection has beenfound to be an important risk factor for HCC (1) although theexact mechanism by which HBV acts in carcinogenesis remainsunclear (2, 3). Activated cellular oncogenes in various humantumors have been detected by DNA-mediated transfection assays using NIH 3T3 mouse fibroblasts (4, 5). An oncogeneactivated in common among HCCs has not been determined,although three types of sequences capable of inducing malignanttransformation in mouse cells have been isolated from humanprimary HCCs (6-10).

A variety of human tumors are also characterized by specificchromosomal deletions, suggesting that loss of tumor suppressor loci (antioncogenes) is important in the pathogenesis ofthese malignancies (11). Recent studies have detected loss ofheterozygosity of restriction fragment length polymorphismsin HCCs as well. The allelic loss in HCCs has been reportedfor loci on chromosomes 4q, 1Ip, 13q, 16q, and 17p (12-16),and the possible presence of a suppressor gene for HCC hasbeen suggested on chromosome 4q (14).

In humans, the albumin and AFP genes are present in tandem, about 14.5 kbp apart, on chromosome 4ql l-ql3 (17, 18).We have been studying the structure and regulation of thesegenes in a human hepatoma cell line, HuH-7 ( 19). In this paper,we show that the albumin gene is rearranged in this cell line.We isolated and characterized a genomic clone carrying theaberrant albumin gene. The results revealed an interstitial deletion of a chromosomal segment within 4qll-ql3, supporting

Received 10/4/90: accepted 12/19/90.The costs of publication of this article were defrayed in part by the payment

of page charges. This article must therefore be hereby marked advertisement inaccordance with 18 t!.S.C. Section 1734 solely to indicate this fact.

1This work was supported b> the National C'aneer Institute of C'anada. the

Medical Research Council of Canada, and Japan Inumino Research Laboratory.Inc.

•Present address: Department of Dermatology. University of Tokushima.

Tokushima 770. Japan.' Present address: Department of Biochemical I.ngineering and Science. Kyu

shu Institute of Technology, li/nk.i. Fukuoka 820. Japan.4Tt) whorn requests for reprints should be addressed, at Department ot Medical

Biochemistry. University of Calgary. Calgary. Alberta T2N 4NI. C'anada.5The abbreviations used are: HCC'. hepatocellular carcinoma: AFP. n-fctopro-

tein; IIBV. human hepatitis B \irus: kbp. fcilobase pairs: cDNA. complementanDNA.

the possibility that a tumor suppressor locus is present near thealbumin gene.

MATERIALS AND METHODS

Cells. A human hepatoma cell line, HuH-7 (kindly supplied by Drs.J. Sato and H. Nakabayashi. University of Okayama, Japan), wasmaintained in a serum-free medium (19). HuH-7 DNA was extracted

from cells of 50 passages and 990 culture days, unless otherwise noted,or 13 passages and 263 culture days, when described as in an earlystage. DNA from a human B-lymphoblastoid cell line. 6.1.6 (20), wasused as a control. Four subclones of the HuH-7 cell line were isolatedat 55 passages and 1095 culture days.

Albumin cDNA and Genomic Clones, phalb-7. a human albumincDNA clone, and XHAL-H14, a human albumin genomic clone, aredescribed elsewhere (18, 21). AHAL-4WU. a genomic clone carrying arearranged human albumin gene, was isolated from a genomic libraryconstructed from a partial I-~ct>Rldigest of HuH-7 DNA. Various

restriction fragments of the genomic clones were subcloned intopBR322 for further analysis. pHAL-H14-Hind6.0 is a subclone of a6.0-kbp Hindlll fragment of AHAL-H14. pHAL-4Vv U-Ecol.5 andpHAL-4\VU-Eco7.5 are subclones of 1.5-and 7.5-kbp Ea>R\ fragmentsof XHAL-4WU, respectively.

Heteroduplex Analysis. The 7.5-kbp EcoRl fragment (0.1 ¿ig)ofpHAL-4WU-Eco7.5 was labeled at the 5' end with (^-"PjATP using

T4 polynucleotide kinase (Bethesda Research Laboratories), mixed witheither the 6.0-kbp //indi 11fragment (2 ^g) of pHAL-H14-Hind6.0 orsheared salmon sperm DNA (2 *jg), denatured in 0.3 M NaOH and 1HIMEDTA at 37°Cfor 15 min, neutralized with HC1. and kepi at room

temperature overnight. The mixture was treated with mung bean nu-clease (Pharmacia) in 30 niM sodium acetate (pH 4.8), 50 niM NaC'l, ImM ZnCN. 5rr glycerol. and denatured salmon sperm DNA (200 ^g/

ml). The protected fragment was recovered by ethanol precipitationand analyzed on a 1 alkaline agarose gel.

Southern Blot Analysis. Southern blot hybridization (22) was carriedout at 65°Covernight in 50 mM Tris-HCl (pH 8.0), 1 M NaCI, 10 mMEDTA, 0.l'i sodium dodecyl sulfate and 10 x Denhardt's solution(23) containing a probe labeled with [«-"PJdCTP by the "oligo-label-ing" method (24) after prchybridization in 3 x 0.15 M NaCl-0.015 Msodium citrate and IO x Denhardt's solution for 2 h. Washing was

done in 0.2 x 0.15 M NaCl-O.OI5 M sodium citrate and 0.1% sodiumdodecyl sulfate at 65°C.

In Situ Hybridization. The 1.5-kbp £ioRl fragment of pHAL-4WU-Ecol.5 was labeled to a specific activity of 10*cpm/^g with |'H] dCTPand ['HjdATP by the "oligo-labeling" method (24) and used as a probe.

Chromosome preparation, in situ hybridization, and chromosome identification were performed according to the procedure of Lin et al. (25).

DNA Sequencing. DNA sequence was determined by the procedureof Maxam and Gilbert (26).

RESULTS

Detection of an Aberrant Albumin Gene Sequence in HuH-7.Southern blot analyses of £foRI digests of human liver and6.1.6 human B-lymphoblastoid cell DNAs using a human albumin cDNA. phalb-7, as a probe revealed two bands 10 kbpand 1.5 kbp long (Fig. 1, Lanes 2 and 3). Similar analysis ofHuH-7 human hepatoma cell DNA detected three bands, a 7.5-kbp band in addition to the two bands described above (Fig. 1,

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DELETION OF CHROMOSOME 4qtl-ql.1 IN A HEPATOMA CELL LINE

kb

23 -

9.5-

6.7-

4.3-

2.2-

1.9-

Fig. I. Detection of the aberrant albumin gene in HuH-7 hepatoma cells.EcoRl digests of DNAs from a hepatoma cell line. HuH-7 (Lane /). human liver(Lane 2). and a human B lymphoblastoid cell line. 6.1.6 (Lane 3). were analyzedusing a human albumin cDNA. phalb-7. as a probe by the method of Southernblot analysis (26). kb, kilobase pairs.

Lane 1). HuH-7 DNA digested with HindlU also yielded anextra 4.5-kbp band not present in ///'«dill digests of normal

liver DNA (data not shown).In order to determine which part of the phalb-7 sequence was

contained in the 7.5-kbp EcoRl or the 4.5-kbp HindUl band,we conducted Southern blot analyses of EcoRl digests and///wdlll digests of HuH-7 DNA using four different fragmentsof phalb-7 as probes (Fig. 2, probes A, B, C, and D). Probes A,B, and C hybridized to both the 7.5-kbp EcoRl and 4.5-kbpHindlU bands, but probe D did not hybridize to either. Normalbands, on the other hand, were detected by all probes. Theseresults suggested that one alíeleof the albumin gene in HuH-7hepatoma is rearranged at a region between the Pstl (P,) siteand the Sstl site (see the bottom diagram of Fig. 2). To furtherdelimit the region of rearrangement we conducted Southernblot analysis using a 2.0-kbp Pst\ (P,-P:) genomic fragment asa probe (probe E). No extra bands were detected in both EcoRland HindlU digests of HuH-7 DNA (Fig. 2£).This indicatesthat the site of recombination resides between the Pstl (P:) andSstl sites.

Isolation and Characterization of a Genomic Clone Carryingthe Altered Human Albumin Gene. To isolate the altered albumin gene sequence we screened a genomic library constructedfrom a partial EcoRl digest of HuH-7 DNA using probe C.Three positive clones were isolated. One of them, AHAL-4WU,did not hybridize to probe E. Digestion of this clone with EcoRlreleased five fragments 1.5, 1.8 , 2.0, 2.7, and 7.5 kbp long.Only the 7.5-kbp fragment, the size of which corresponded tothat of the extra band found by Southern blot analysis of EcoRldigests of HuH-7 DNA. hybridized to probes B and C (data notshown). This fragment was subcloned into pBR322 for furtheranalysis. Restriction sites of this subclone, pHAL-4WU-Eco7.5, were compared with those of the corresponding segment of the normal albumin gene (pHAL-H 14-Hind6.0), which

1234 234 1234 I 2 3 1234

kb

9.5- ;

5 Hp BB 1II/'

SsH1

1^53'.aOObp.X

Albumin locus |EH Hp EEIII II

BB

,1kb.

HP, PiI

SsI

EH

Cop poly AXHAL-H14

Fig. 2. Southern blot analysis of the aberrant albumin sequence using various albumin probes. EcoRl (Lanes I and 2) and //indi 11(Lanes .?and 4) digests of HuH-7 (Lanes I and J) and 6.1.6 (Lanes 2 and 4) DNAs were analyzed using four albumin cDNA fragments (A, B. C. and D) and one albumin genomic fragment (E) asprobes. The human albumin cDNA clone, phalb-7 (18. 21, 28). and a genomic clone. XHAL-H14. are drawn relative to the albumin gene. Five probes (A. B. C, D,and E) used in Southern blot analysis are shown by horizontal arrows. B, BgK\: E, EcoRl: II, HindUl; /"/and P.\ Pstl; Ss, Sstl: Hp. Hpalll; kh, kilobase pairs; poly A,polyadenylate; bp, base pairs.

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DKIFTION Ol CHKOMOSOMh: 4qll gli IN A HF.PATOMA CELL LINE

PHAL-4WU-ECO 75S K

22 —

PPKA

pHAL-HI4-Hindfi.O

XHAL-HI4

Fig. 3. Comparison of restriction maps between the normal and aberrantalbumin genes. Top, genomic clone carrying the aberrant albumin gene sequence.XHAL-4WU. A finer restriction map of pHAl.-4\VU-Eco7.5. a subclone of the7.5-kbp AVoRI fragment of XHAL-4\\T!. is compared with that of pHAI.-HI4-I lindo.!), a subclonc of the 6.0-kbp///'ndlII fragment of AHAL-H14 which carries

the normal albumin gene sequence. •exons II. 12. and 15 of the albumin gene.Horizontal arrows, strategy for DNA sequencing. A. Aval: E, EcoRl. H. //mdl II:/// Hinfí;Up, llpaìl:K, Kpnl, S, Sstl; X, Xha\: Xh, Xho\. All Hind sites exceptone used for DNA sequencing are omitted, kh, kilobase pairs.

B

kb

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9.5-

6.7-

4.3-

2.2-

1.9-

resistant to the nuclease digestion was formed (Fig.4.-l, Lanes 3and 4), indicating that the 3.0-kbp regions of both fragmentshad identical DNA sequences. A control sample in whichsalmon sperm DNA replaced the 6.0-kbp ///«dill fragmentexhibited no nuclease-resistant band (Fig. 40).

DNA Sequences Surrounding the Rearrangement Site. Todetermine the site at which the albumin gene sequence wasaltered we analyzed nucleotide sequences surrounding the rightmost Ava\ site of the normal and altered albumin clones (Fig.5).DNA sequences were identical up to 98 nucleotides upstreamof the Aval site between the two clones. DNA sequences upstream of this point were completely different. The site ofsequence alteration was flanked by a 58-base pair alternatingpurine-pyrimidine stretch, consisting primarily of G and T, andan Alu sequence (27). Whether or not these sequences played arole in the generation of the altered albumin gene is not clearat present. The matched nucleotide sequence has been found inintron 11 of the albumin gene (28).

Detection of the Albumin Gene Rearrangement in Hull" Cells

at an Early Stage of Culture. A question arises as to when therearrangement of the albumin gene took place in the hepatoma.Since we were unable to obtain the primary hepatoma lesionfrom which the HuH-7 cell line was established, we examinedHuH-7 cells at an early stage of in vitro culture (13 passagesand 263 culture1 clays) and four subclones derived from the cells

of 55 passages and 1095 culture days for the presence of theaberrant albumin sequence. Southern blot analysis using ihe2.0-kbp Xbal-lùvRl fragment of pllAL-4WU-Eco7.5 (a normal genomic region in the rearranged albumin gene) as a probeshowed that the hepatoma cells of the early stage and all (hesubclones examined carried the normal ( 10 kbp) and rearranged(7.5 kbp) hands in almost an equal amount (Fig.6).

Chromosome l.ocali/alion of the Non-Albumin SequenceLinked to the Truncated Alhuinin (¿ene.To determine whichchromosome carried the non-albumin sequence linked to thealbumin sequence in XHAI.-4WU we conducted ;'/; situ hybrid

ization analysis (Fig.7). We chose the 1.5-kbp luwRl fragmentmost distal to the breakpoint (see Fig. 3) as a probe because all

AAGTGTTCTCTCrTTTATfTACTATGTTAGArAGTTTCTTCCCTTCCTCAAAACACA/V.-W.'/

N TGACTTCTTTTTTKAI,,XT ATTAGTTO.TTACAITAAI.AAAl.TAITKAA(,TCTfAA(TfCAACTfTTGTAOAGGTCTC""

N IAACAAACCTACCAAAACTCCCCACCAAATCTTCTAAACATCCTCAACCAAAAACAATCCCCTCTGCACAACACTAI^TCAA: TTCCAGTTCCAGTCAGATGAACCGGGTACCTCGGTTGGAAÕTCCAGAG

Fig. 4. Ilei* ....ii'i'l. M.i!' i ot the ,i.. ii .in albumin titile. A mixture of the.V . n.n.,1.. i, ,i 7.5-khp £VoRIfragment of pHAl.-4\Vll-Eco7.S and either the6.0 kh|)///m!lll fragment of pHAI.-ll 14 Himlh.O M ) or sonicated salmon spermDNA («)was denatured in alkaline, remmired, and treated with O.I (Lune I), I(Lane .'), 10 (/.am- .•(•or 100 units (l.ane •/)ol mung bean nuclease i he nueleaseresistant fragments were si/ed un a l'i alkaline agarose gel. kh, kilohase pairs.

hybridi/ed to probes B and C (Fig.3). Identical restriction mapswere found in the 3-kbp region on the 3' side of the DNAbetween the rightmost Aval site and the 3' end. The region

upstream of the Ava\ site, on the other hand, showed entirelydifferent maps.

The identity of the 3-khp segment on the 3' side of the DNA

was confirmed by a heteroduplex analysis using mung beannuclease (Fig.4). Hcteroduplexes were constructed between the6.0-kbp ///«dill fragment of pHAL-HI4-Hind6.0 and the 5'end-labeled 7.5-kbp EcoRl fragment of pHAL-4WU-Eco7.5and treated with mung bean nuclease. A 3.0-kbp fragment

GfCTTTAAAAAAATATAATAAATTAATAATUAAAAATTTTACCTTIAGATATTCATAATGfTAMTTTCAT«A(.fAGAA

ATCACCIGTCTTCTGTGTCCATCACCCTGGGAGCTGCTGACTGAACGTGTTCCTATtrCGCCACCfi-iitatiflrPuriacMrrriMriir

r.GAAGTAATGTCTGTGTGTCCATCmGTGTGfATGTGTGTGTGCATCrAfGTGTGTGTATCTGTCATATTGGCAGTCAA

Aval AlustyucnccGGCCCCGAGGATGATAAmnTTTUm TTTGAGAC6GAOrCTCGCTTTGTTGTCCAGGCTGGAGTGCAGTCGIGfCA

rCTCCGCTCACTCrAAIIKIUlTillACl.nrAAGCCATTCTCfTCCCTCAGffTfCrAACTAtrrCGAACTACAGCr

;CATGCC»CCATGCCTGGCIAATTTTTTGTATTTTTAGTACAjMAITTTC«crnCACCTCTTTItAATTTrTGfTfTCC

N TGCCTGTTCTTTACJCTATCCCTCCTCCTGAACCACHATCTCTCTTCCATCACAAAACCCCACTAACTCACACACTCA

Fig. S. Nucleolide sequences surroundinc the rearraniiemeni site. The mielentide sequence of the aberrant gene (A} is compared with lhal of the normalalhumin yene (.V). A ilul denotes an identical nucleolide. Exons 11 and 12 of the,11..im11,yene, an alternating purine p>riniidine streich, and an Alu sequence are

Ixi.ml. ()nl> a pan of e\on 12 is shown. Sequencing strategies are shown in Fig.3,

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DELETION OF CHROMOSOME 4qll-ql.l IN A HEPATOMA CELL LINE

other EcoRl fragments of AHAL-4WU contained repetitivesequences (data not shown). Sixty-eight metaphase spreads thatshowed hybridization signals (grains) on chromosomes wereanalyzed. A total of 100 grains were located on specific chromosomal regions in these metaphase spreads. Fifteen % of thegrains were found at band 4ql2-ql3. The maximum number ofgrains located on other chromosome regions was 3%. Theseobservations indicated that the non-albumin sequence was located on chromosome 4ql2-ql3.

DISCUSSION

The isolation and characterization of a genomic clone carrying the aberrant albumin gene from HuH-7 cells revealed alinkage of albumin and non-albumin sequences in intron 11 ofthe albumin gene. In situ hybridization experiments assignedthe non-albumin sequence to chromosome 4ql2-ql3. Since thehuman albumin gene is mapped at 4ql l-ql3 (17), these resultsindicate an interstitial deletion of a chromosomal segmentwithin 4ql l-ql3 in HuH-7 cells. The deleted segment must belost from the cells because the albumin cDNA probe, whichextended beyond the rearrangement site upstream, detectedonly one extra band in both EcoRl and Hindlll digests. Deletions of DNAs in chromosomes 4q, lip, 13q, 16q, and 17phave been shown in human HCCs (12-16, 29, 30). Buetow etal. (14) have reported that five of five primary HCCs constitutionally heterozygous for the albumin locus examined show lossof an alíelefor albumin. These results and ours suggest that asuppressor oncogene for HCC may be located in the vicinity ofthe albumin gene. The genomic clone carrying the rearrangedalbumin sequence reported in this paper may prove to be usefulin identifying the suppressor oncogene.

I

kb

23 -

9.5-6.7-

4.3-

2.2-1.9-

l'i •indi i •i M i h m I'll •<i !•¿mm\ 'ifritüÕÉii< •!u

ii

CHROMOSOME

19 2

NUMBER

Fig. 7. Chromosomal localization of the aberrant albumin gene by in situhybridization. Histogram showing the distribution of the silver grains on chromosome regions. Sixty-eight metaphase spreads were analyzed and a total of 100grains were located and recorded. The highest percentage (15%) of grains wasfound on chromosome 4ql2-ql3.

Southern blot analysis revealed the alteration of the albumingene in HuH-7 in an early stage of;«vitro culture (13 passagesand 263 culture days) and in all the subclones examined. Theamount of the rearranged alíelein these cells was almostidentical to that of the normal alíele(see Fig. 7), indicating thatthe abnormal alíeleis present in all cells. These results suggestthat the deletion of the albumin locus took place in vivo and isnot an in v/fro-produced phenomenon. Since the rearrangedalíelehas been maintained stably in the established cell line, itis possible that cells carrying the alteration may have a growthadvantage in vitro. This is compatible with the observationsthat all informative HCC samples show allelic loss of thealbumin locus (14).

Gross chromosomal rearrangements, such as translocationand deletion, have been reported near sites of HBV integrationin HCC DNAs (29-33). We could not detect HBV DNAsequences in HuH-7 or the clones carrying the truncated albumin gene by Southern blot hybridization (data not shown). Theserum of the patient from whom the HuH-7 cell line was derivedwas negative for both human hepatitis B virus surface antigenand antibodies against human hepatitis B virus surface antigen.6

Thus, HBV infection does not seem to be necessary for theinduction of the genomic alteration described above althoughthe possibility of HBV acting in a "hit-and-run" fashion (34)

cannot be ruled out.The formation of the aberrant gene shown here results in a

decrease in the albumin gene dose. In some hepatomas, such asHuH-7, albumin expression is repressed while AFP expressionis elevated (19, 35, 36). Whether the observed genomic rearrangement is causally related to the high and low expressionof the AFP and albumin genes, respectively, remains to beinvestigated.

ACKNOWLEDGMENTS

We thank Dr. A. G. Knudson and Dr. K. H. Buetow for their interestin this work and Dr. J. Sato and Dr. N. Nakabayashi for the supply ofHuH-7 cells.

Fig. 6. Detection of the aberrant gene in HuH-7 cells of an early stage of invitro culture and subclones. The EcoRl digests of HuH-7 DNAs from 1.1passagesand 263 culture days (Lane I) and from four subclones (Lanes 2-5) isolated at55 passages and 1095 culture days were analyzed using the 2.0-kbp Xhal-EcoRlfragment of pHAL-4WU-Eco7.5 (see Fig. 3) as a probe. Note that the intensityof the two bands in each lane is almost the same, kb, kilobase pairs.

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1991;51:1460-1464. Cancer Res   Yoshio Urano, Kazutada Watanabe, C. C. Lin, et al.   Hepatoma Cell Line

q13 in a Human−Interstitial Chromosomal Deletion within 4q11

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