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Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the short version)

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Page 1: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Molecular Modelling usingQuantum Drude Oscillators

by Flaviu Cipcigan(the short version)

Page 2: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the
Page 3: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the
Page 4: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the
Page 5: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

In order to understand the properties of substances, we need molecular models that are both accurate and efficient to simulate.

Page 6: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Solving the Schrodinger equation

aim: accurate description of the system(ab initio quantum mechanics)

Page 7: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Solving the Schrodinger equation

aim: accurate description of the systemproblem: inefficient

(ab initio quantum mechanics)

Page 8: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Molecular Modelsaim: efficient description of a system

Page 9: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Begin with efficient building blocks

Page 10: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Begin with efficient building blocksand assemble them

Page 11: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Begin with efficient building blocksand assemble them into molecules

Page 12: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Molecular building blocks are point charges

Page 13: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Molecular building blocks are point charges

Page 14: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Nuclei are point charges

Page 15: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Electrons are not!

Page 16: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

electric field

they easily redistributeElectrons are not!

Page 17: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

current approaches offer a trade off between accuracy and efficiency

dilemma

Page 18: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

(or QDO)The Quantum Drude Oscillatoraim: efficiently model electronic response

Page 19: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

harmonic

pseudoelectron

pseudonucleus

Page 20: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

electrostatic

Page 21: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

van der Waals

Page 22: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

damping & repulsion

Page 23: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

model the polarisable part of a molecule

Page 24: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

but how well?model the polarisable part of a molecule

Page 25: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

k

q, m

-q

a QDO only has three free parameters

Page 26: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

H Li K RbCs

0.5

—0.5

0

0.5

—0.5

0

0.5

—0.5

0

He Ne Ar Kr Xe

CH4

H2O

Polarisation Invariants(polarisabilities related to each other)

Page 27: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

0.5

—0.5

0

0.5

—0.5

0

0.5

—0.5

0

H LiK Rb Cs

He Ne Ar Kr Xe

BH3 CH4 NH3 H2O

Van der Waals Invariants(van der Waals coefficients related to each other)

Page 28: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

the response of a QDO matches that of a wide range of atoms & molecules

Page 29: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Since a QDO is a simple quantum mechanical object, it can be efficiently simulated

Page 30: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

A QDO model for Argonaim: demonstrate physical validity

Page 31: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

why choose argon?

Page 32: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

spherical, unpolarisedwhy choose argon?

Page 33: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

binds via van der Waals forcesspherical, unpolarisedwhy choose argon?

Page 34: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

-0.4

0.0

0.4

distance between atoms / bohr radius

6 7 8 9 10 11 12

inte

ract

ion

en

erg

y /

mH

art

ree Interaction potential between

two Argon QDOs

Page 35: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Modelling the FCC argon solidaim: demonstrate accuracy and transferability

Page 36: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

experimental observablesresults

Page 37: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

lattice constant binding energy

bulk modulus

Page 38: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

compress and expand the solid and calculate its energy

Page 39: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

0

—2

—4

—6

—8

—10

—12

—14

0.89 0.92 0.94 0.96 0.98 1.00 1.02

lattice parameter / 5.29 A

en

erg

y p

er

un

it c

ell

/ mH

art

ree

256 atoms

Page 40: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

argon QDO parametrised in the gas phase reproduced the equation of state of a solid bound via many body van der Waals forces

key result

Page 41: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

but how accurately?

key result

argon QDO parametrised in the gas phase reproduced the equation of state of a solid bound via many body van der Waals forces

Page 42: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

5.24

5.2563

32 108 256 500

lattice constant

atoms in cluster

calculated

measured

5.2563 A

5.3296 A± 0.0007

Page 43: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

—13.08

—16

32 108 256 500

—14

—15

binding energyper unit cell

atoms in cluster

—13.08 mHartree

—11.80 mHartree± 0.01 per unit cell

per unit cell

Page 44: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

—11.90

—14.8

32 108 256 500

—12.8

—13.8

binding energyper unit cell

—11.90 mHartree

—11.80 mHartree± 0.01 per unit cell

per unit cell

atoms in cluster

with nuclear zero point energy

Page 45: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

32 108 256 500

5

4.5

4.36

4.36 GPa

2.88 GPa± 0.08

± 0.04

bulk modulus

Page 46: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Argon QDO parametrised in the gas phase reproduced the equation of state of a solid bound via many body van der Waals forces

But how accurately?

key result

Page 47: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Argon QDO parametrised in the gas phase reproduced the equation of state of a solid bound via many body van der Waals forces

As accurately as specialised models

But how accurately?

key result

Page 48: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

The future of QDOs

Page 49: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Elastic properties of noble gases

Page 50: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Transferable water model

Page 51: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Biomolecules

Page 52: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Conclusions

Page 53: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Quantum Drude Oscillators capture the essential quantum properties of a molecule resulting in efficient, accurate and transferable molecular models

Page 54: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the
Page 55: Molecular Modelling using Quantum Drude Oscillatorsvjm/MPhys/Welcome_files/Flaviu... · 2013-07-29 · Molecular Modelling using Quantum Drude Oscillators by Flaviu Cipcigan (the

Image credit

lego: www.flickr.com/photos/donsolo/3706017309/

old building plan: docsouth.unc.edu/unc/unc02-80/unc02-80.html

Autodesk Revit Architecture: www.hagerman.com/products/2010/revitarch2010.htm