1

March 28, 2019 Publications (Tomoki FUKAI) 1. Chi Chung Alan Fung and Tomoki Fukai (2019) Discrete-attractor-like tracking in

continuous attractor neural networks. Phys Rev Lett, 122, 018102, doi:10.1103/PhysRevLett.122.018102

2. Anthony Joseph DeCostanzo, Chi Chung Alan Fung and Tomoki Fukai (2019) Hippocampal neurogenesis reduces the dimensionality of sparsely coded representations to enhance memory encoding. Front Comput Neurosci, 12(99): 1-21, doi: 10.3389/fncom.2018.00099

3. Tomoki Kurikawa, Tatsuya Haga, Takashi Handa, Rie Harukuni and Tomoki Fukai (2018) Neuronal stability in medial frontal cortex sets individual variability in decision-making. Nat Neurosci, 21:1764-1773, doi:10.1038/s41593-018-0263-5

4. Tatsuya Haga and Tomoki Fukai (2018) Dendritic processing of spontaneous neuronal sequences for single-trial learning. Sci Rep, 8: 15166, doi:10.1038/s41598-018-33513-9

5. Toshitake Asabuki, Naoki Hiratani and Tomoki Fukai (2018) Interactive reservoir computing for chunking information streams. PLoS Comput Biol, 14(10):e1006400, doi:10.1371/journal.pcbi.1006400

6. Naoki Hiratani and Tomoki Fukai (2018) Redundancy in synaptic connections enables neurons to learn optimally. PNAS, 115(29): E6871-E6879, doi:10.1073/pnas.1803274115

7. Chi Chung Alan Fung and Tomoki Fukai (2018) Transient and persistent up states during slow-wave oscillation and their implications for cell-assembly dynamics. Sci Rep, 8: 10680, doi:10.1038/s41598-018-28973-y

8. Tatsuya Haga and Tomoki Fukai (2018) Recurrent network model for learning goal-directed sequences through reverse replay. Elife, 7:e34171, doi:10.7554/eLife.34171

9. Gonzalo Martín-Vázquez, Toshitake Asabuki, Yoshikazu Isomura and Tomoki Fukai (2018) Learning task-related activities from independent local-field-potential components across motor cortex layers. Front Neurosci, 12:429. doi:10.3389/fnins.2018.00429

10. Naoki Hiratani and Tomoki Fukai (2017) Detailed dendritic excitatory/inhibitory balance through heterosynaptic spike-timing-dependent plasticity. J Neurosci, 37 (50): 12106-12122, doi: 10.1523/JNEUROSCI.0027-17.2017

2

11. Robert E Kass, Shun-Ichi Amari, Kensuke Arai, Emery N Brown, Casey O Diekman, Markus Diesmann, Brent Doiron, Uri T Eden, Adrienne L Fairhall, Grant M Fiddyment, Tomoki Fukai, Sonja Grün, Matthew T Harrison, Moritz Helias, Hiroyuki Nakahara, Jun-nosuke Teramae, Peter J Thomas, Mark Reimers, Jordan Rodu, Horacio G Rotstein, Eric Shea-Brown, Hideaki Shimazaki, Shigeru Shinomoto, Byron M Yu and Mark A Kramer (2017) Computational neuroscience: Mathematical and statistical perspectives. Annu Rev Stat Appl, 5: 183-214, doi:10.1146/annurev-statistics-041715-033733

12. Takashi Handa, Takashi Takekawa, Rie Harukuni, Yoshikazu Isomura and Tomoki Fukai (2017) Medial frontal circuit dynamics represents probabilistic choices for unfamiliar sensory experience. Cerebr Cortex, 27(7):3818-3831, doi: 10.1093/cercor/bhx031

13. Daisuke Miyamoto, Daichi Hirai, Chi Chung Fung, Ayumu Inutsuka, Maya Odagawa, Takayuki Suzuki, Roman Boehringer, Chinnakkaruppan Adaikkan, Chie Matsubara, Norio Matsuki, Tomoki Fukai, Thomas J McHugh, Akihiro Yamanaka and Masanori Murayama (2016) Top-down cortical input during NREM sleep consolidates perceptual memory. Science, 352(6291):1315-1318, doi: 10.1126/science.aaf0902

14. Naoki Hiratani and Tomoki Fukai (2016) Hebbian wiring plasticity generates efficient network structures for robust inference with synaptic weight plasticity. Front Neural Circuits, 10(41) : 1-19, doi: 10.3389/fncir.2016.00041

15. Yoshiyuki Omura, Milena M Carvalho, Kaoru Inokuchi and Tomoki Fukai (2015) A lognormal recurrent network model for burst generation during hippocampal sharp waves. J Neurosci, 35(43):14585-14601, doi: 10.1523/JNEUROSCI.4944-14.2015

16. Naoki Hiratani and Tomoki Fukai (2015) Mixed signal learning by spike correlation propagation in feedback inhibitory circuits. PLoS Comput Biol, 11(4): e1004227, 1-36, doi: 10.1371/journal.pcbi.1004227

17. Ryunosuke Amo, Felipe Fredes, Masae Kinoshita, Ryo Aoki, Hidenori Aizawa, Masakazu Agetsuma, Tazu Aoki, Toshiyuki Shiraki, Hisaya Kakinuma, Masaru Matsuda, Masako Yamazaki, Mikako Takahoko, Takashi Tsuboi, Shin-ichi Higashijima, Nobuhiko Miyasaka, Tetsuya Koide, Yoichi Yabuki, Yoshihiro Yoshihara, Tomoki Fukai and Hitoshi Okamoto (2014) The habenulo-raphe serotonergic circuit encodes an aversive expectation value essential for adaptive active avoidance of danger. Neuron 84:1034-1048, doi: 10.1016/j.neuron.2014.10.035

18. Susanne Kunkel, Maximilian Schmidt, Jochen M Eppler, Hans E Plesser, Gen Masumoto, Jun Igarashi, Shin Ishii, Tomoki Fukai, Abigail Morrison, Markus

3

Diesmann and Moritz Helias (2014) Spiking network simulation code for petascale computers. Front Neuroinform, 8(78): 1-23, doi: 10.3389/fninf.2014.00078

19. Naoki Hiratani and Tomoki Fukai (2014) Interplay between short- and long-term plasticity in cell-assembly formation. PLoS One, 9(7):e101535, 1-16, doi: 10.1371/journal.pone.0101535

20. Takashi Takekawa, Keisuke Ota, Masanori Murayama and Tomoki Fukai (2014) Spike detection from noisy neural data in linear-probe recordings. Eur J Neurosci, 39: 1943-1950, doi:10.1111/ejn.12614

21. Florence I Kleberg, Tomoki Fukai and Matthieu Gilson (2014) Excitatory and inhibitory STDP jointly tune feedforward neural circuits to selectively propagate correlated spiking activity. Front Comput Neurosci. 8(53):1-15, doi: 10.3389/fncom.2014.00053

22. Vladimir V Klinshov, Jun-nosuke Teramae, Vladimir I Nekorkin and Tomoki Fukai (2014) Dense neuron clustering explains connectivity statistics in cortical microcircuits. PLoS One, 9(4):e94292, 1-12, doi: 10.1371/journal.pone.0094292

23. Tomoki Fukai and Jun-nosuke Teramae (2014) Lessons from spontaneous neural noise genesis on neuromorphic engineering. Proc IEEE, 102(4):513, doi: 10.1109/JPROC.2014.2307019

24. Jun-nosuke Teramae and Tomoki Fukai (2014) Computational implications of lognormally distributed synaptic weights. Proc IEEE, 102(4):500-512, doi: 10.1109/JPROC.2014.2306254

25. Nobuhiko Wagatsuma, Tobias C. Potjans, Markus Diesmann, Ko Sakai and Tomoki Fukai (2013) Spatial and feature-based attention in a layered cortical microcircuit model. PLOS One, 8(12): e80788,1-14, doi: 10.1371/journal.pone.0080788

26. Jun Igarashi, Yoshikazu Isomura, Kensuke Arai, Rie Harukuni and Tomoki Fukai (2013) A θ-γ oscillation code for neuronal coordination during motor behavior. J Neurosci, 33(47):18515-18530. doi: 10.1523/JNEUROSCI.2126-13.2013

27. Yoshikazu Isomura, Takashi Takekawa, Rie Harukuni, Takashi Handa, Hidenori Aizawa, Masahiko Takada, and Tomoki Fukai (2013) Reward-modulated motor information in identified striatum neurons. J Neurosci, 33(25):10209-10220, doi: 10.1523/JNEUROSCI.0381-13.2013

28. Hidenori Aizawa, Shin Yanagihara, Megumi Kobayashi, Kazue Niisato, Takashi Takekawa, Rie Harukuni, Thomas J McHugh, Tomoki Fukai, Yoshikazu Isomura and Hitoshi Okamoto (2013) The synchronous activity of lateral habenular neurons is essential for regulating hippocampal theta oscillation. J Neurosc, 33(20): 8909- -8921, doi: 10.1523/JNEUROSCI.4369-12.2013

4

29. Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2013) Neural dynamics and information representation in microcircuits of motor cortex. Front Neural Circuits, 7(85):1-10, doi: 10.3389/fncir.2013.00085

30. Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2013) Passage-time coding with a timing kernel inferred from irregular cortical spike sequences. J Stat Mech, P03004: 1-21, doi:10.1088/1742-5468/2013/03/P03004

31. Naoki Hiratani, Jun-nosuke Teramae and Tomoki Fukai (2013) Associative memory model with long-tail-distributed Hebbian synaptic connections. Front Comput Neurosci, 6 (102): 1-15, doi:10.3389/fncom.2012.00102

32. Hidenori Aizawa, Megumi Kobayashi, Sayaka Tanaka, Tomoki Fukai and Hitoshi Okamoto (2012) Molecular characterization of the subnuclei in rat habenula. J Comp Neurol, 520(18):4051-66, doi: 10.1002/cne.23167

33. Moritz Helias, Susanne Kunkel, Gen Masumoto, Jun Igarashi, Jochen Martin Eppler, Shin Ishii, Tomoki Fukai, Abigail Morrison and Markus Diesmann (2012) Supercomputers ready for use as discovery machines for neuroscience. Front Neuroinform, 6 (26):1-12, doi: 10.3389/fninf.2012.00026

34. Matthieu Gilson, Tomoki Fukai and Anthony N Burkitt (2012) Spectral analysis of input spike trains by spike-timing-dependent plasticity. PLoS Comput Biol, 8(7): e1002584-1-22, doi: 10.1371/journal.pcbi.1002584

35. Jun-nosuke Teramae, Yasuhiro Tsubo and Tomoki Fukai (2012) Optimal spike-based communication in excitable networks with strong-sparse and weak-dense links. Sci Rep, 2 (485): 1-6, doi:10.1038/srep00485

36. Takashi Takekawa, Yoshikazu Isomura and Tomoki Fukai (2012) Spike sorting of heterogeneous neuron types by multimodality-weighted PCA and explicit robust variational Bayes. Front Neuroinform, 6(5):1-13, doi: 10.3389/fninf.2012.00005

37. Yasuhiro Tsubo, Yoshikazu Isomura and Tomoki Fukai (2012) Power-law inter-spike interval distributions infer a conditional maximization of entropy in cortical neurons. PLoS Comput Biol, 8(4):e1002461,1-11, doi: 10.1371/journal.pcbi.1002461

38. Jun Igarashi, Osamu Shouno, Tomoki Fukai and Hiroshi Tsujino (2011) Real-time simulation of a spiking neural network model of the basal ganglia circuitry using general purpose computing on graphics processing units. Neural Netw, 24(9):950–960, doi: 10.1016/j.neunet.2011.06.008

39. Tomohiro Fujita, Tomoki Fukai and Katsunori Kitano (2011) Influences of membrane properties on phase response curve and synchronization stability in a model globus pallidus neuron. J Comput Neurosci, 32(3):539-553, doi: 10.1007/s10827-011-0368-2

5

40. Matthieu Gilson and Tomoki Fukai (2011) Stability versus neuronal specialization for STDP: long-tail weight distributions solve the dilemma. PLoS One, 6(10): e25339, 1-18, doi: 10.1371/journal.pone.0025339

41. Rie Kimura, Siu Kang, Naoya Takahashi, Atsushi Usami, Norio Matsuki, Tomoki Fukai and Yuji Ikegaya (2011) Hippocampal polysynaptic computation. J Neurosci, 31(37): 13168-13179, doi:10.1523/JNEUROSCI.1920-11.2011

42. Nobuhiko Wagatsuma, Tobias C. Potjans, Markus Diesmann and Tomoki Fukai (2011) Layer-dependent attentional processing by top-down signals in a visual cortical microcircuit model. Front Comput Neurosci, 5:31, doi: 10.3389/fncom.2011.00031

43. Naosugi Yumoto, Xiaofeng Lu, Thomas R Henry, Shigehiro Miyachi, Atsushi Nambu, Tomoki Fukai and Masahiko Takada (2011) A neural correlate of the processing of multi-second time intervals in primate prefrontal cortex. PLoS One, 6 (4): e19168, 1-7, doi: 10.1371/journal.pone.0019168

44. Yoko Fujiwara-Tsukamoto, Yoshikazu Isomura, Michiko Imanishi, Taihei Ninomiya, Minoru Tsukada, Yuchio Yanagawa, Tomoki Fukai and Masahiko Takada (2010) Prototypic seizure activity driven by mature hippocampal fast-spiking interneurons. J Neurosci, 30(41): 13679-13689, doi:10.1523/JNEUROSCI.1523-10.2010

45. Leonid A Safonov, Yoshikazu Isomura, Siu Kang, Zbigniew R Struzik, Tomoki Fukai and Hideyuki Câteau (2010) Near scale-free dynamics in neural population activity of waking/sleeping rats revealed by multiscale analysis. PLoS One, 5(9): e12869, 1-11, doi: 10.1371/journal.pone.0012869

46. Tomoki Fukai, Yuji Ikegaya and Stefan Rotter (2010) Editorial:Analysis and modeling of massively parallel neural signals. Neural Netw, 23(6): 667-668, doi:10.1016/j.neunet.2010.05.010

47. Ken Nakae, Yukito Iba, Yasuhiro Tsubo, Tomoki Fukai and Toshio Aoyagi (2010) Bayesian estimation of phase response curves. Neural Netw, 23(6):752-763, doi: 10.1016/j.neunet.2010.04.002

48. Takashi Takekawa, Yoshikazu Isomura and Tomoki Fukai (2010) Accurate spike-sorting for multiunit recordings. Eur J Neurosci, 31(2):263-272, doi:10.1111/j.1460-9568.2009.07068.x

49. Yoko Yazaki-Sugiyama, Siu Kang, Hideyuki Câteau, Tomoki Fukai and Takao K. Hensch (2009) Bidirectional plasticity in fast-spiking GABA circuits by visual experience. Nature, 462: 218-221, doi:10.1038/nature08485

50. Yoshikazu Isomura, Rie Harukuni, Takashi Takekawa, Hidenori Aizawa and Tomoki Fukai (2009) Microcircuitry coordination of cortical motor information in

6

self-initiation of voluntary movements. Nat Neurosci, 12:1586-1593, doi:10.1038/nn.2431

51. Takashi Takekawa and Tomoki Fukai (2009) A novel view of the variational Bayesian clustering. Neurocomputing, 72(13-15):3366-3369, doi: 10.1016/j.neucom.2009.04.003

52. Hiroshi Okamoto and Tomoki Fukai (2009) Recurrent network models for perfect temporal integration of fluctuating correlated inputs. PLoS Comput Biol, 5(6): e1000404, 1-10, doi: 10.1371/journal.pcbi.1000404

53. Jun-nosuke Teramae and Tomoki Fukai (2008) Temporal precision of spike response to fluctuating input in pulse-coupled networks of oscillating neurons. Phys Rev Lett, 101: 248105, 1-4, doi: 10.1103/PhysRevLett.101.248105

54. Yutaka Sakai and Tomoki Fukai (2008) When does reward maximization lead to matching law? PLoS One, 3(11): e3795, 1-7, doi: 10.1371/journal.pone.0003795

55. Jun-nosuke Teramae and Tomoki Fukai (2008) Complex evolution of spike patterns during burst propagation through feed-forward networks. Biol Cybern, 99(2): 105-114, doi: 10.1007/s00422-008-0246-9

56. Hideyuki Câteau, Katsunori Kitano and Tomoki Fukai (2008) Interplay between a phase response curve and spike-timeing-dependent plasticity leads to wireless clustering. Phys Rev E, 77: 051909, 1-6, doi: 10.1103/PhysRevE.77.051909

57. Yutaka Sakai and Tomoki Fukai (2008) The actor-critic learning is behind the matching law: Matching versus optimal behaviors. Neural Comput, 20: 227-251, doi:10.1162/neco.2008.20.1.227

58. Siu Kang, Katsunori Kitano and Tomoki Fukai (2008) Structure of spontaneous up and down transitions self-organizing in a cortical network model. PLoS Comput Biol, 4(3): e1000022, 1-12, doi: 10.1371/journal.pcbi.1000022

59. Jun-nosuke Teramae and Tomoki Fukai (2007) Sequential associative memory with non-uniformity of the layer sizes. Phys Rev E, 75:011910, 1-7, doi: 10.1103/PhysRevE.75.011910

60. Yoko Fujiwara-Tsukamoto, Yoshikazu Isomura, Michiko Imanishi, Tomoki Fukai and Masahiko Takada (2007) Distinct types of ionic modulation of GABA actions in pyramidal cells and interneurons during electrical induction of hippocampal seizure-like network activity. Eur J Neurosci, 25: 2713-2725, doi:10.1111/j.1460-9568.2007.05543.x

61. Jun-nosuke Teramae and Tomoki Fukai (2007) Local cortical circuit model inferred from power-law distributed neuronal avalanches. J Comput Neurosci, 22:301-312, doi: 10.1007/s10827-006-0014-6

7

62. Yasuhiro Tsubo, Masahiko Takada, Alex D Reyes and Tomoki Fukai (2007) Layer and frequency dependences of phase response properties of pyramidal neurons in rat moter cortex. Eur J Neurosci, 25:3429-3441, doi: 10.1111/j.1460-9568.2007.05579.x

63. Hiroshi Okamoto, Yoshikazu Isomura, Masahiko Takada and Tomoki Fukai (2007) Temporal integration by stochastic recurrent network dynamics with bimodal neurons. J Neurophysiol, 97: 3859-3867, doi:10.1152/jn.01100.2006

64. Takashi Takekawa, Toshio Aoyagi and Tomoki Fukai (2007) Synchronous and asynchronous bursting states: Role of intrinsic neural dynamics. J Comput Neurosci, 23:189-200, doi: 10.1007/s10827-007-0027-9

65. Katsunori Kitano and Tomoki Fukai (2007) Variability v.s. synchrony of neuronal activity in local cortical network models with different topologies. J Comput Neurosci. 23: 237-250, doi: 10.1007/s10827-007-0030-1

66. Yasuhiro Tsubo, Jun-nosuke Teramae and Tomoki Fukai (2007) Synchronization of excitatory neurons with strongly heterogeneous phase responses. Phys Rev Lett, 99: 228101, 1-4, doi: http://dx.doi.org/10.1103/PhysRevLett.99.228101

67. Keiji Miura, Yasuhiro Tsubo, Masato Okada and Tomoki Fukai (2007) Balanced excitatory and inhibitory inputs to cortical neurons decouple firing irregularity from rate modulations. J Neurosci. 27:13802-13812, doi: 10.1523/JNEUROSCI.2452-07.2007

68. Takashi Takekawa, Toshio Aoyagi and Tomoki Fukai (2006) Synchronization property of slow cortical oscillations. PTP Supplement, 161:356-359, doi: 10.1143/PTPS.161.356

69. Yutaka Sakai, Hiroshi Okamoto and Tomoki Fukai (2006) Computational algorithms and neuronal network models underlying decision processes. Neural Netw, 19: 1091-1105, doi:10.1016/j.neunet.2006.05.034

70. Hiroshi Okamoto, Yoshikazu Isomura, Masahiko Takada and Tomoki Fukai (2005) Combined modeling and extracellular recording studies of up and down transitions in awake or behaving monkeys. Basal Ganglia VIII Advances in Behavioral Biology, 56, 555-561

71. Jun-nosuke Teramae and Tomoki Fukai (2005) A cellular mechanism for graded persistent activity in a model neuron and its implications in working memory. J Comput Neurosci, 18: 105-121, doi:10.1007/s10827-005-5474-6

72. Katsunori Kitano and Tomoki Fukai (2004) Temporal characteristics of the predictive synchronous firing modeled by spike-timing-dependent plasticity. Learn Mem, 11: 267-276, doi:10.1101/lm.64904

8

73. Masaki Nomura, Toshio Aoyagi and Tomoki Fukai (2004) Gamma frequency synchronization in a local cortical network model. Neurocomputing, 58-60: 173-178

74. Hiroshi Okamoto and Tomoki Fukai (2004) Propagation of quasi-stable activation in a chain of recurrent neural networks. Neurocomputing, 58-60: 235-238

75. Siu Kang, Katsunori Kitano and Tomoki Fukai (2004) Spontaneous two-state membrane potential fluctuations in a self-organized network of realistic cortical neuron models. The Journal of Japan Neural Network Society, 11(2):56-63 (in Japanese).

76. Siu Kang, Katsunori Kitano and Tomoki Fukai (2004) Self-organized two-state membrane potential transitions in a network of realistically modeled cortical neurons. Neural Netw, 17: 307-312, doi:10.1016/j.neunet.2003.11.010

77. Takashi Takekawa, Toshio Aoyagi and Tomoki Fukai (2004) Influences of synaptic location on the synchronization of rhythmic bursting neurons. Network: Comput. Neural Syst, 15: 1-12

78. Katsunori Kitano and Tomoki Fukai (2004) Predictive synchrony organized by spike-based Hebbian learning with time-representing synfire activities. In: Neural Information Processing: Research and Development, pp.77-93, Rajapakse, Jagath C., Wang, Lipo (Eds), Springer-Verlag.

79. Hiroshi Okamoto and Tomoki Fukai (2003) Neural bases of accumulator models. Neurocomputing, 52-54: 285-288, doi:10.1016/S0925-2312(02)00778-6

80. Masaki Nomura, Tomoki Fukai and Toshio Aoyagi (2003) Synchrony of fast-spiking interneurons interconnected by GABAergic and electrical synapses. Neural Comput, 15: 2179-2198, doi:10.1162/089976603322297340

81. Hiroshi Okamoto and Tomoki Fukai (2003) Physiologically realistic modelling of a mechanism for neural representation of intervals of time. BioSystems, 68: 229-233

82. Katsunori Kitano, Hiroshi Okamoto and Tomoki Fukai (2003) Time representing cortical activities: two models inspired by prefrontal persistent activity. Biol Cybern, 88: 387-394, doi:10.1007/s00422-002-0390-6

83. Toshio Aoyagi, Takashi Takekawa and Tomoki Fukai (2003) Gamma rhythmic bursts: coherence control in networks of cortical pyramidal neurons. Neural Comput, 15: 1035-1061, doi:10.1162/089976603765202659

84. Hideyuki Cateau and Tomoki Fukai (2003) A stochastic method to predict the consequence of arbitrary forms of spike-timing-dependent plasticity. Neural Comput, 15(3): 597-620, doi:10.1162/089976603321192095

9

85. Hideyuki Cateau, Katsunori Kitano and Tomoki Fukai (2002) An accurate and widely applicable method to determine the distribution of synaptic strength formed by the spike-timing-dependent plasticity. Neurocomputing, 44-46: 343-351

86. Tomoki Fukai, Katsunori Kitano, Toshio Aoyagi and Youngnam Kang (2002) Modeling the layer V cortical pyramidal neurons showing theta-rhythmic firing in the presence of muscarine. Neurocomputing, 44-46: 103-108

87. Katsunori Kitano, Hideyuki Cateau and Tomoki Fukai (2002) Sustained activity with low firing rate in a recurrent network regulated by spike-timing-dependent plasticity. Neurocomputing, 44-46: 473-478

88. Katsunori Kitano, Hideyuki Cateau and Tomoki Fukai (2002) Self-organization of memory activity through spike-timing- dependent plasticity. NeuroReport, 13: 795-798

89. Toshio Aoyagi, Youngnam Kang, Nobuhiko Terada, Takeshi Kaneko and Tomoki Fukai (2002) The role of Ca2+-dependent cationic current in generating gamma frequency rhythmic bursts: modeling study. Neuroscience, 115(4): 1127-1138

90. Katsunori Kitano, Hideyuki Cateau, Katsuyuki Kaneda, Atsushi Nambu, Masahiko Takada and Tomoki Fukai (2002) Two-state membrane potential transitions of striatal spiny neurons as evidenced by numerical simulations and electrophysiological recordings in awake monkeys. J Neurosci, 22 RC230: 1-6

91. Hiroshi Okamoto and Tomoki Fukai (2001) On experimental predictions from a model for a neural mechanism of internal timer. Neurocomputing, 38-40, 1489-1493

92. Katsunori Kitano, Toshio Aoyagi and Tomoki Fukai (2001) Synchronous and asynchronous activities in a network of striatal spiny projection neurons. Neurocomputing, 38-40:721-726

93. Toshio Aoyagi, Nobuhiko Terada, Youngnam Kang, Takeshi Kaneko and Tomoki Fukai (2001) A bursting mechanism of chattering neurons based on calcium-dependent cationic currents. Neurocomputing, 38-40: 93-98

94. Tomoki Fukai (2001) Neuronal analog-digital information transformations at the gamma frequency. Neurocomputing, 38-40: 615-619

95. Hideyuki Cateau and Tomoki Fukai (2001) Fokker-Planck approach to the pulse packet propagation in synfire chain. Neural Netw, 14: 675-685 (Special Issue: Spiking Neurons in Neuroscience and Technology).

96. Tomoki Fukai and Seinichi Kanemura (2001) Noise-tolerant stimulus discrimination by synchronization with depressing synapses. Biol Cybern, 85: 107-116

10

97. Katsunori Kitano, Toshio Aoyagi and Tomoki Fukai (2001) A possible functional organization of the corticostriatal input within the weakly-correlated striatal activity: A modeling study. Neurosci Res, 40: 87-96

98. Hiroshi Okamoto and Tomoki Fukai (2001) Neural mechanism for cognitive timer. Phys Rev Lett, 86(17): 3919-3922

99. Tomoki Fukai (2000) Neuronal communication within synchronous gamma oscillations. NeuroReport, 11: 3457-3460

100. Tomoki Fukai and Seinichi Kanemura (2000) Precisely-timed synchronization by depressing synapses. Neurocomputing, 32-33: 133-140

101. Hiroshi Okamoto and Tomoki Fukai (2000) A model for neural representation of intervals of time. Neurocomputing, 32-33: 935-939

102. Hiroshi Okamoto and Tomoki Fukai (2000) A model for neural representation of temporal duration. BioSystems, 55: 59-64

103. Tomoki Fukai, Tomoyuki Kimoto, Makoto Doi and Masato Okada (1999) Coexistence of uncorrelated and correlated attractors in a nonmonotonic neural network. J Phys A Math Gen, 32(30): 5551-5562

104. Tomoki Fukai (1999) Modeling the interplay of short-term memory and the basal ganglia in sequence processing. Neurocomputing, 26-27: 687-692

105. Tomoki Fukai (1999) Sequence generation in arbitrary temporal patterns from theta-nested gamma oscillations: A model of the basal ganglia-thalamo-cortical loops. Neural Netw, 12:975-987 (Special Issue: Organisation of Computation in Brain-like Systems)

106. Tetsuya Asai, Tomoki Fukai and Shigeru Tanaka (1999) A subthreshold MOS circuit for the Lotka-Volterra neural network possessing the winner-take-all and winners-share-all solutions. Neural Netw, 12: 211-216

107. Masato Okada, Tomoki Fukai and Masatoshi Shiino (1998) Random and systematic dilutions of synaptic connections in a neural network with a nonmonotonic response function. Phys Rev E, 57: 2095-2103

108. Tomoki Fukai and Shigeru Tanaka (1997) A simple neural network exhibiting selective activation of neuronal ensembles: From winner-take-all to winners-share-all. Neural Comput, 9: 77-97

109. Tomoki Fukai (1996) Competition in the temporal domain among neural activities phase locked to subthreshold oscillations. Biol Cybern, 75: 453-461

110. Tomoki Fukai (1996) Bulbocortical interplay in olfactory information processing via synchronous oscillations. Biol Cybern, 74: 309-317

11

111. Tatsuya Asai, Hideyo Yokotsuka and Tomoki Fukai (1996) A MOS circuit for a nonmonotonic neural network with excellent retrieval abilities. IEEE Trans Neural Netw, 7: 182-189

112. Tomoki Fukai (1995) Oscillations for rapid selection of neural activities based on spike timing. Neuroreport, 7: 273-277

113. Toshiki Matsushita, Susumu Moriyama and Tomoki Fukai (1995) Switching dynamics and the transient memory storage in a model enzyme network involving Ca2+/calmodulin protein kinase II in synapses. Biol Cybern, 72: 497-509

114. Tomoki Fukai, Jongho Kim and Masatoshi Shiino (1995) Retrieval properties of analog neural networks and the nonmonotonicity of transfer functions. Neural Netw, 8: 391-404

115. Tomoki Fukai (1995) A model cortical circuit for the storage of temporal sequences in cortex. Biol Cybern, 72: 321-328

116. Tomoki Fukai and Masatoshi Shiino (1995) Memory recall by quasi-fixed-point attractors in neural networks of oscillators. Neural Comput, 7: 529-548

117. Tomoki Fukai (1994) Synchronization of neural activity is a promizing mechanism of memory information processing in networks of columns. Biol Cybern, 71: 215-226

118. Tomoki Fukai and Masatoshi Shiino (1994) Memory encoding by oscillator death. Europhys Lett, 26: 647-652

119. Tomoki Fukai (1994) A model of cortical memory-processing based on columnar organization. Biol Cybern, 70: 427-434

120. Masatoshi Shiino and Tomoki Fukai (1993) Self-consistent signal-to-noise analysis of the statistical behavior of analog neural networks & enhancement of the storage capacity. Phys Rev E,48: 867-897

121. Masatoshi Shiino and Tomoki Fukai (1993) Onset of super retrieval phase & enhancement of the storage capacity in neural networks of nonmonotonic neurons. J Phys A Math Gen, 26: L831-L841

122. Tomoki Fukai and Masatoshi Shiino (1992) Study of self-inhibited analog neural networks using the self-consistent signal-to-noise analysis. J Phys A Math Gen, 25: 4799-4811

123. Tomoki Fukai and Masatoshi Shiino (1992) Comparative study of spurious state distribution of analog neural networks & the Boltzmann machine. J Phys A Math Gen, 25: 2873-2887

124. Masatoshi Shiino and Tomoki Fukai (1992) Self-consistent signal-to-noise analysis & its application to analog neural networks with asymmetric connections. J Phys A Math Gen, 25: L375 -L381

12

125. Tomoki Fukai and Masatoshi Shiino (1990) Large suppression of spurious states in neural networks of nonlinear analog neurons. Phys Rev A,42 (12): 7459-7466

126. Masatoshi Shiino and Tomoki Fukai (1990) Replica-symmetric theory of the nonlinear analogue neural networks. J Phys A Math Gen, 23: L1009-L1017

127. Masatoshi Shiino and Tomoki Fukai (1990) Chaotic image retrieval in markovian asymmetric neural networks with sign-constrained synaptic couplings. Journal of Physical Society of Japan, 59(5): 1529-1532

128. Tomoki Fukai and Masatoshi Shiino (1990) Asymmetric neural networks incorporating the Dale hypothesis & noise-driven chaos. Phys Rev Lett, 64: 1465-1468

129. Tomoki Fukai (1990) Metastable states of neural networks incorporating the physiological Dale hypothesis. J Phys A Math Gen, 23(2): 249-258

130. Akira Shudo, Masahiro Mizutani and Tomoki Fukai (1988) Canonical correlations of non-integrable quantum system. Phys Let, 130A: 338-343

131. Tomoki Fukai (1988) BRST quantization of local supersymmetric chiral boson-fermion system. Phys Rev, D37: 3582-3587

132. Tomoki Fukai (1988) Anomaly cancellations in the local supersymmetric Siegel lagrangian. Nucl Phys, B299: 346-354

133. Tomoki Fukai and Madhusudan V Atre (1987) Topology of the grassmanian sigma model on a lattice. Mod Phys Lett A,2: 601-608

134. Tomoki Fukai, Yoshiki Kizukuri, Noriyuki Oshimo, Yoshie Otake and Naoshi Sugiyama (1987) Study of wino pair production in e+e- annihilation. Progress of Theoretical Physics, 78: 395-412

135. Tomoki Fukai and Naoshi Sugiyama (1986) Gravitino as the dark matter on all scales. Phys Lett, 173B: 120-125

136. Tomoki Fukai and Keisuke Okano (1985) Stochastic quantization of linearized Euclidean gravity & no-ghost Feynman rules. Progress of Theoretical Physics 73(3): 790-802

137. Tomoki Fukai and Yoshiki Kizukuri (1984) A backward hierarchy model coupled to N=1 supergravity & the double missing partner mechanism. Phys Lett, 143B: 396-402

138. Tomoki Fukai, Noriyuki Oshimo and Yoshiki Kizukuri (1984) A supersymmetric SU(5)xU(1) model with natural gauge hierarchy. Zeitschrift fur Physik, C25: 75-80

139. Tomoki Fukai (1984) The pseudoscalar masses in the technicolor model with the massive techniquarks. Nuovo Cimento, 79A: 410-418

13

140. Tomoki Fukai, Hiromichi Nakazato, Ichiro Ohba, Keisuke Okano and Yoshiya Yamanaka (1983) Stochastic quantization method of fermion fields. Progress of Theoretical Physics, 69: 1600-1616

Miscellaneous

1. 深井朋樹（2018）「脳回路研究とAIの融合に向けて」、ファルマシア（公益社団法人日

本薬学会編集）2018年54巻9号, pp.867-869. 2. Naoki Hiratani and Tomoki Fukai (2017) Selection of Synaptic Connections by Wiring

Plasticity for Robust Learning by Synaptic Weight Plasticity. In: The Rewiring Brain: A Computational Approach to Structural Plasticity in the Adult Brain, (eds. Arjen van Ooyen and Markus Butz-Ostendorf) pp.275-292, Academic Press, doi:.

3. 深井朋樹（2017）「脳とAIの両方を視野に入れた研究 AIと人間が共存する社会の構築

に欠かせない」日経ビッグデータ、データが創る未来 2017年8月号、pp.32-33. 4. Tomoki Fukai, Vladimir Klinshov and Jun-nosuke Teramae (2014) Cortical Networks with

Lognormal Synaptic Connectivity and Their Implications in Neuronal Avalanches, Criticality in Neural Systems edited by Dietmar Plenz and Ernst Niebur, pp.403-416, WILEY-VCH Verlag GmbH & Co, KGaA, Boschstr. 12, 69469 Weinheim, Germany ISBN: 978-3-527-41104-7.

5. Jun-nosuke Teramae, Yasuhiro Tsubo and Tomoki Fukai (2013) Long-tailed statistics of corticocortical EPSPs: Origin and computational role of noise in cortical circuits, Advances in Cognitive Neurodynamics (III) Proceedings of the Third International Conference on Cognitive Neurodynamics-2011 edited by Yoko Yamaguchi, pp.161-167, Springer Dordrecht Heidelberg New York London, ISBN: 978-94-007-4791-3.

6. 深井朋樹（2009）シリーズ脳科学１ 脳の計算論「第1章：総論、第2章：ニューロンと

シナプスの数学的モデル、第7章：スパイクニューロンの回路モデルと認知機能」、東

京大学出版会 2009.6.22, 1-43, pp.253-267. 7. 深井朋樹、姜時友、北野勝則、寺前順之介（2008）「大脳皮質神経細胞集団の形成：シ

ナプス可塑性とその先」、Brain and Nerve:神経研究の進歩 60(7), pp.763-770. 8. 坪泰宏、深井朋樹（2008）「ダイナミッククランプ：導入とネットワーク研究への展開」、

日本神経回路学会誌 15(2), pp.110-116. 9. 深井朋樹（2007）「第6章 脳はどのように情報を伝えるのか」、脳研究の最前線 上：

脳の認知と進化 pp.281-331. 10. 深井朋樹、岡本洋、酒井裕 (2005)「行動決定の計算論」、神経研究の進歩 49(4),

pp.573-581.

14

11. 岡本洋、坪下幸寛、深井朋樹 (2005)「漸次的持続活動の神経生理学および計算論的知

見が開く連想記憶の新しい地平」、日本神経回路学会誌 12(4), pp.235-248. 12. 深井朋樹（2002）「計算論的神経科学」、ネットサイエンス・インタビュー・メールに

て配信（編集 森山和道、発行人 科学技術用ソフトウェアデータベースサイト・ネッ

トサイエンス） 13. 深井朋樹、加藤英之、北野勝則（2002）「脳の情報表現」、Computer Today 2002年7月

号、pp.9-15（サイエンス社） 14. 深井朋樹（2002）「脳内クロックの計算モデル」、脳を知る・創る・守る第4巻、pp.94-117.

2002年7月（脳の世紀推進会議編、クバプロ） 15. 岡本洋、深井朋樹（2002） 「脳内時計の神経機構」、別冊・数理科学2002年10月、pp.51-59

（サイエンス社） 16. 加藤英之、深井朋樹（2002）「Fokker-Planck方程式を用いた発火タイミング依存シナプ

ス可塑性の解析―ラットの海馬、電気魚の小脳様器官への応用―」、電子情報通信学会

信学技報 NLP2001-88, pp.23-28. 17. 姜英男、青柳富誌生、深井朋樹（2002）「大脳皮質の錐体細胞とガンマ周波数帯のバー

スト発火」、脳の情報表現、pp.120-130. 2002年3月（銅谷賢治、伊藤浩之他編. 朝倉書

店） 18. 深井朋樹、高木博（2002）「ニューロンと局所回路のダイナミクス」、脳の情報表現、

pp.107-119. 2002年3月（銅谷賢治、伊藤浩之他編. 朝倉書店） 19. 加藤英之、深井朋樹（2001）「Fokker-Planck方程式を用いた神経集団活動の解析」、日

本神経回路学会誌8､pp.94-102. 解説 20. 伊藤正夫、榊佳之、田中繁、深井朋樹、三品昌美、藤田道也、脳とこころ－21世紀の課

題－（座談会）Ⅱ．こころと脳の要素との関係、生態の科学、53巻第１号、pp.27-44、（金原一郎記念医学医療振興財団／医学書院）

21. 加藤英之、深井朋樹（2001）「発火タイミング依存性Hebb学習によるシナプス荷重分

布の変化を記述する厳密なFokker-Planck方程式を用いた学習結果の予測」、電子情報通

信学会 信学技報、NC2000-165, pp.67-73. 22. 深井朋樹、加藤英之、北野勝則（2001）「前頭皮質における記憶機能の計算論的モデル

と線条体神経活動解析への応用」、脳の科学23巻12号（特集／大脳皮質－大脳基底核ル

ープと運動制御）pp.1069-1075.（2001年12月、星和書店） 23. 深井朋樹（2000）「Self-consistentな信号雑音解析法による連想記憶モデルの記憶特性の

解析」、システム/制御/情報 44, pp.512-517（システム制御情報学会） 24. 岡本洋、深井朋樹（2000）「脳内時計の神経機構」、数理科学2000年6月号、pp.37-44

（サイエンス社） 25. 深井朋樹（2000）「動物の記憶作業と神経活動」（第８章７節）、脳科学大事典（甘利

俊一、外山敬介編. 朝倉書店. 2000年４月初版）pp.809-812.

15

26. 深井朋樹（2000）「スパースコーディング・スパース結合」（第８章３節）、脳科学大

事典（甘利俊一、外山敬介編. 朝倉書店. 2000年４月初版）pp.791-796. 27. 深井朋樹 (1997)「ブレインウェア：連想記憶と神経競合」Computer Today 1997年9月（サ

イエンス社） 28. 椎野正寿、深井朋樹 (1993) 「ニューラルネットの統計力学とカオス」、ニューラルネ

ットワークシステムとカオス、pp.189-244.（合原一幸編．東京電機大学出版会、1993） 29. Masatoshi Shiino and Tomoki Fukai (1990) Chaotic dynamics of stochastic neural networks,

Proceedings of International Conference on Fuzzy Logic & Neural Networks, IIZUKA-90, pp.595-599.