rulai.cshl.edurulai.cshl.edu/tissuespecclass/motifpairs.pdf · accession factor logo accession...
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Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None A
GTGGA
GAGGAG
CG
TC M00445 Xvent-1
ACG
TCG
ATCG
AGTC
GAT
GATC
TCTT
GGCT
TGC
GTC FG 0.384 0.454 0.778
Novel-3 None GCG
TCTA
GTGGT
AGCG Novel-4 None
TAG
AG
AGGA
GAAGGGA
G FG 0.385 0.474 0.756Novel-5 None
CGGAA
GGGCG
TC
TGG M01000 AIRE
CG
ACGTTC
TATA
TGTA
CTA
CGT
ACTGG
GAT
CT
GA
CGT
CGA
CTTC
TG
ACGC
GT
CGTG
TA FG 0.390 0.416 0.804
Novel-7 None GTCT
CCCTCCG
TGC
TC M00238 BarbieBox
GCTA
CAGT
GTAC
CGTAAAAGA
TGC
GCAT
ACTG
CTAG
CGTA
ATG
CTAG FG 0.392 0.560 0.656
Novel-9 None ATCA
CTA
GAAC
TAGC
TAG
A Novel-10 None TA
GC
TATT
GTGA
TCGAG
A BG 0.394 0.476 0.736
Table 1: Five motif pairs with lowest classification error in Human AdiposeTissue.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp1 A
GGAGGC
GTC
CGA
GGCG M00468 AP-2rep
TAC
CTA
ACG
CT
CTAG
ACTG
CATG FG 0.353 0.736 0.558
Novel-3 None AG
AGC
GCGC
ATGGGCC
T M00528 PPARCGTA
CGTA
ATGC
GACT
CTGAGA
GACTG
GATC
GA
CGTA
CGTA
AGT
GCGT
TGC
GTA FG 0.364 0.584 0.688
Novel-5 Sp-1 GGGCTGGT
AGG M01014 SOX
ATC
GTCA
TTTGAT
GT
CTA
AGCT
ACG
CGTA FG 0.365 0.732 0.538
Novel-7 None TA
GA
CAAATT
ATA
TA
GA Novel-8 None T
ATATAT
ATA
CGAG
AGA BG 0.378 0.342 0.902
Novel-9 None ATAT
AT
GTA
TCA
CAT
AT M00078 Evi-1GTAGAG
CT
TAAGAC
TTAAGAC
GT
CTA
CTA BG 0.380 0.442 0.798
Table 2: Five motif pairs with lowest classification error in Mouse AdiposeTissue.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 KROX GA
GGCTGGC
GAGA
CG M00469 AP-2α GCCAGTC
ATCG
TCAG
TCAG
TCAG
ATCG FG 0.379 0.536 0.706
Novel-3 NoneCGA
TAAA
TGA
CTTTG
AT
GT M00421 MEIS1BHOXA9 TGACG
ATCG
ACGT
AT
AT
CGAT
GA
GCT
TAG
CAG BG 0.382 0.570 0.666
Novel-5 None TTCT
CAT
AT
TAG
ATTA
CAG Novel-6 None
ATT
CAGA
TGA
TAGAC
TCT BG 0.385 0.444 0.786
Novel-7 Sp-1 GAGA
GGTGT
CTGGGG M00974 SMAD
GACT
CTGA
ACTG
ATGC
TCAGC
GACG
CTA
ATCG FG 0.385 0.518 0.712
Novel-9 None CGC
GCGGGAG
ACT
CG Novel-10 NoneCGGAA
GGGCG
TC
TGG FG 0.386 0.632 0.596
Table 3: Five motif pairs with lowest classification error in Human AdrenalGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp1 GT
CCT
GCCTAGA
GCAA
C M00088 Ik-3AGT
TGAC
GTC
CAT
AGGGAAC
TTGA
ATC
ATC FG 0.336 0.652 0.676
Novel-3 None GTCG
AGCA
GC
ACC
ACGG Novel-4 KROX GGGCGGGT
AC FG 0.338 0.794 0.530
Novel-5 None GC
CAGT
AGGA
GCGAGA
G Novel-6 None GCGCCAGGGC FG 0.338 0.800 0.524
Novel-7 None TAAT
ATAA
TTATGA
TTA M00162 Oct-1
AGC
GTA
CGAT
CTA
CTATG
TGTA
AGCATT
AG
CT
CGAT BG 0.371 0.444 0.814
Novel-9 None CAT
AGAATATA M00145 Brn-2
ACTG
AGCT
AGTC
TA
ATA
CGT
ATGC
TAG
ATAAAT
TCAG
GTCA
TAG
GATC BG 0.371 0.462 0.796
Table 4: Five motif pairs with lowest classification error in Mouse AdrenalGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GGCGA
CG
TGGGG
CCG Novel-2 None C
GCG
CG
CAGGAGGAC
G FG 0.378 0.440 0.804Novel-3 None
TAC
AAGCTT
GTCTC
GCG M00063 IRF-2
CGAT
AAACGC
TGAAAGC
GTC BG 0.380 0.412 0.828
Novel-5 None GCG
CGGA
CGCTAGC
G Novel-6 KROX CTGCCCG
CCTGCA
GC FG 0.381 0.500 0.738
Novel-7 NoneGCG
ATAAC
GCTG
CTCTG Novel-8 None GGT
CTTGC
GACGG
TAG BG 0.382 0.466 0.770
Novel-9 None TGCA
CGC
TAG
AGA
CGTG M00104 CDP-CR1
CGTA
CA
GACT
GTC
CTAG
CTA
CGT
AGTC
ATCG
ATGC BG 0.383 0.424 0.810
Table 5: Five motif pairs with lowest classification error in Human Amygdala.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None A
GGAGAG
TGGT
CG
TA
TG Novel-2 None A
TGC
AC
ATCCTCCT
CTC FG 0.391 0.586 0.632
Novel-3 None AG
TG
TGAA
TCGTAAAC
G M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC BG 0.392 0.488 0.728
Novel-5 None AGGC
AAGA
GGGCAGC
A M00073 δEF1GCAT
GATC
AGCT
GTC
TAC
G
CTCATG
CTGA
TCGA FG 0.392 0.490 0.726
Novel-7 Sp-1 TGGGGGA
TTGGT
CG
TG Novel-8 None GC
GTAGGC
AGCG
TCGG FG 0.394 0.416 0.796
Novel-9 None TATCCA
TAGAGG
TAT
AC M00239 v-ErbA
ACG
GCTA
ACGT
GT
CAG
GAGGTCAA
TC
ATCG
AGC
AGTC
GTCA BG 0.394 0.428 0.784
Table 6: Five motif pairs with lowest classification error in Mouse Amygdala.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None AGC
AACAA
GAG
TGC
TTC M00193 NF-1
GACT
GATC
ACTTGG
G
AC
GCTA
TCGA
TACG
GTCA
CTGA
ACTG
GATC
AGTC
GCTA
CTGA
CTGA FG 0.380 0.466 0.774
Novel-3 None CTCA
CAC
GAGG
CTAC
TC Novel-4 None C
GAT
ATGGC
GCCTAGG FG 0.384 0.460 0.772
Novel-5 Sp1 GAGCGGGGA
GC
GC
TCG M00394 Msx-1
GATC
AGTC
ATCG
ACGT
CGTA
CTA
CGAT
CGT
ACTG BG 0.386 0.574 0.654
Novel-7 NoneAGC
GAC
CTGGCGCA
GG Novel-8 CdxA AGTAAT
AATTAT BG 0.387 0.592 0.634
Novel-9 None AG
AGG
CACAGGA
CTTG M00764 HNF-4
AGT
CG
TGA
GTAC
ACC
TACT
AT
AGC
GTA
TGC
TC
GATC FG 0.388 0.408 0.816
Table 7: Five motif pairs with lowest classification error in Human BoneMarrow.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
CCGCGG
CCGCG
CTGG
C M00916 CREBTACG
CATG
CGAT
ACGT
TGAC
CAGTG
CCA
ACTG
AGTC
CATG
ATCG BG 0.367 0.654 0.612
Novel-3 None TC
ACA
TCG
GC
ACTCT
CC Novel-4 NRF-2 GCCGGC
AACG
ATC
CG
AC BG 0.374 0.526 0.726
Novel-5 None CTCT
AGCTA
GA
CATT
CC Novel-6 Sp-1 ACGGC
GGCGCG BG 0.376 0.640 0.608
Novel-7 Sp1ACC
GGGCT
CGCCT
GTCC M00277 Lmo2
ATGC
ATCG
TAGCCAA
TG
ACGTGG
TC
GCAT
ATCG BG 0.378 0.498 0.746
Novel-9 NoneGAG
ATCCCTA
TGT
CGCA Novel-10 Nrf-1 GCGG
CTAC
CTGCT
CG
TC BG 0.379 0.550 0.692
Table 8: Five motif pairs with lowest classification error in Mouse BoneMarrow.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
AATTC
TTTC
TCTC
TGC M00321 MuscleInit
CAGT
ATGC
TAGC
TAGC
ATCG
TGAC
AGTC
TCAG
GTACCAA
GTC
AGTC
AGC
TAC
TACG
ATCG
TGAC
ACG
AGTC
GATC FG 0.390 0.462 0.758
Novel-3 None AAGACT
AGGA
GTGTC
T Novel-4 Sp-1 GTC
TC
ACCGCCT
CTC FG 0.397 0.390 0.816
Novel-5 PITX2GT
CGTAG
ATTC
ATC
AC
GA M00017 ATF
GTAC
ACGT
TACGTGACG
GCAT
GTAC
CGTA
TACG
AGTC
AGTC FG 0.397 0.462 0.744
Novel-7 Lyf-1 TTTAGGT
GCAGA
GAGC M00032 c-Ets-1
CGTA
AC
TACGGAC
TA
CAG
ACT
TCGA FG 0.400 0.492 0.708
Novel-9 None AT
GAAC
ATGA
TAAATG
ATA
TA M00431 E2F-1
AGCT
CGT
ATG
CCG
GC
CG
TGC FG 0.401 0.428 0.770
Table 9: Five motif pairs with lowest classification error in Human CD4TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None A
GGACCC
AAGCA
CTA
AG M00650 MTF-1
ACGT
CGTTGCG
ACTCACC
TAG
CTG
AGC
GTAC
TGC FG 0.368 0.520 0.744
Novel-3 None AG
TAGA
GGC
TCAT
GGCC Novel-4 None C
TAG
CAC
GTGTCC
TAGGA
GA FG 0.372 0.412 0.844Novel-5 Hmx3 GCACC
TGTGG Novel-6 None G
CAGGCCTAGA
GTG
GCC
TCA FG 0.374 0.526 0.726
Novel-7 NoneCAA
GAT
TG
GCA
TGGAGA M00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC FG 0.376 0.448 0.800
Novel-9 None CGAC
GGACAA
GTGAGC
G M00447 ARGA
AGA
TGA
GC
CGTA
CGT
ACTG
CAT
ATGTA
TCAT FG 0.376 0.558 0.690
Table 10: Five motif pairs with lowest classification error in Mouse CD4TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00691 ATF-1 CG
CT
AGTC
CGT
CGAA
CGAT
AC
TA M00743 c-Ets-1
GC
GCAGGAT
AGTC FG 0.384 0.500 0.732
Novel-3 None ATGGT
GAAC
AGAG
ACAT
G Novel-4 None TC
ACTG
TGTCC
TCTC
CT BG 0.387 0.398 0.828
Novel-5 None AGGGG
ATGA
GAG
AGAG Novel-6 AP-4 AGCTG
CTGTG BG 0.390 0.496 0.724
Novel-7 None GGGTAGC
ATG
TGGAA
G M00626 RFX1 AC
AG
AT
CT
GA
AC
GCT
CTA
TG
AGG
CGTA
CAA
C BG 0.392 0.506 0.710Novel-9 None TT
CTCTA
CATCA
CCATC M00264 Staf
GTCA
GACT
CGT
CAT
ATCCCG
AACGT
GAC
CTGA
GT
CTGCT
AC
CGAT
GACT
ACTG
AC
CTAG
CGA BG 0.395 0.450 0.760
Table 11: Five motif pairs with lowest classification error in Human CD8TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
AAGGA
CAGGA
AG
CAGC M00761 p53decamer
TCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC FG 0.388 0.576 0.648
Novel-3 None TA
CGT
GCTTGGA
CTC
CT Novel-4 None AA
GGTGC
TCTA
TCATCA
TAG FG 0.390 0.546 0.674
Novel-5 NoneTCA
GC
TAA
GCGCAGA
GG M00317 PolyAGTAC
CATG
GTAC
TCGTGA
GT
CTG
CTG
AT
AGTC
ACT
TGAC
GTAG
CT
AGTC FG 0.393 0.502 0.712
Novel-7 None GA
TGT
GCGAGAA
GAG
TC Novel-8 None
CAGT
AAGA
CTAGA
GAGA FG 0.398 0.432 0.772
Novel-9 None ACA
CAGG
AAAG M01009 HES1CTGA
TCGA
ACG
TCG
ACG
TGTCGTGT
CG
ATGC
AGCT
GTAC
CTAG FG 0.401 0.520 0.678
Table 12: Five motif pairs with lowest classification error in Mouse CD8TCells.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp-1 GGC
GCGT
CTGGGGA
G Novel-2 NoneTGGA
GGACGCC
AGAG FG 0.360 0.504 0.776
Novel-3 NoneCTAAAAC
TATA
TCTA
GTC
T M00526 GCNFTGAC
ACGT
TAGC
CTGA
GTA
A
GCGTTCAC
ATG
A
CGT
A
CGT
TC
CGTAG
TAC
AGTC BG 0.363 0.568 0.706
Novel-5 None ACA
GAT
ATAC
TGTAAG
ACA M00225 STAT3
ACGT
ACTG
ACTG
ATGC
GA
CATTTCCC
GGT
GAATGA
A
GCT
TACG
CTGA
CGAT
GACT BG 0.366 0.640 0.628
Novel-7 None CT
TAAAG
AACT
CA
GCA
TA M00128 GATA-1
CTGA
ACGT
TGAC
CGTAGATAC
TGA
TCAG
CTAG
TCAG
ATCG BG 0.370 0.588 0.672
Novel-9 None TTGTT
GAG
TAG
TAA
GGC M00742 HFH-4GCTA
AT
ATG
GACT
AG
A
TTTAG
CT
AT
AT
GTA BG 0.374 0.632 0.620
Table 13: Five motif pairs with lowest classification error in Human Cerebellum.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GA
GAG
CGGA
CTCAGC
GG Novel-2 None GCTAGGT
AGGC
GACA
GG FG 0.371 0.462 0.796Novel-3 None C
GAG
AGGT
GACGC
GCGG Novel-4 None GGT
ACGAGC
GGAGC
GCG FG 0.379 0.526 0.716
Novel-5 None AC
GCA
CGACT
CCCAT
GCCT
C Novel-6 None CGCAGCTGCC FG 0.379 0.636 0.606
Novel-7 CAC-bind GGCGC
GATGGGT
CG
TCG Novel-8 Sp1 C
GCAGGGA
GGAC
AGGA
GAG FG 0.380 0.530 0.710
Novel-9 None TGCA
CAAC
AAGAAT
GTA Novel-10 None AA
GTTAC
CA
TAA
GTGT
A BG 0.381 0.442 0.796
Table 14: Five motif pairs with lowest classification error in Mouse Cerebellum.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GC
ACG
CGG
CTGGAA
GG Novel-2 Nrf-1 CGCATGGCG BG 0.326 0.714 0.634
Novel-3 Sp-1 CGAGGGCGG M00651 NF-muE1
GCC
GGCCATTC
GT BG 0.336 0.728 0.600
Novel-5 Sp-1 ATA
GTCGG
AGAGCGT
GG M00189 AP-2GAC
ATG
TCCT
CACG
AGC
TGAC
ACTG
ACG
GAC
ATCG BG 0.346 0.588 0.720
M00539 ArntTAGC
TGCA
CTGA
GTCA
CATG
TCAG
AGTCACGTGT
CA
AGTC
GATC
ACGT
GACT
ACGT
ATCG M00803 E2F
CG
CGCGG
CACTG BG 0.347 0.832 0.474
Novel-9 None CGAGGCGT
CG M00025 Elk-1AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC BG 0.348 0.698 0.606
Table 15: Five motif pairs with lowest classification error in Human DorsalRootGanglia.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None C
GTCGGC
GTGT
CTGGC
G M00057 COMP1ACGT
ACG
ACGT
ACGT
AT
AGT
CG
TA
AT
AT
AG
CGA
GC
CTGA
TGA
TGC
TGA
CGAA
CG
CA
CAG
CAG
CGT
ATCG FG 0.365 0.802 0.468
Novel-3 None GCTCGG
CAGGG
CGC
CG M00927 AP-4
CAG
GTAC
GC
CTA
CG
AGCTGA
TC FG 0.368 0.612 0.652
Novel-5 None CG
CGGAC
GCGC
GAC
AGG Novel-6 None C
GGC
TC
CGGGCT
GCG
CGGC FG 0.369 0.684 0.578
Novel-7 None CG
ACGCC
GGCTGCG
C M00233 MEF-2GTCA
TAGC
AGCT
ATG
GAT
GTT
GA
G
CC
TC
TAT
AAAAC
TAA
GTGCA
CTA
G
TCA
GTAC
GACT FG 0.371 0.648 0.610
Novel-9 Sp-1 TAGGGA
CATG
CG
CGGT
C M00532 RP58ACTG
TCGA
CA
GACAG
TG
CTGCTG
GCA FG 0.374 0.432 0.820
Table 16: Five motif pairs with lowest classification error in Mouse DorsalRootGanglia.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None AG
AACTA
CTGT
AGAAC
A Novel-2 None TA
GTAAT
AAGTATG
TTA
GA BG 0.351 0.636 0.662
Novel-3 None ATA
CA
GTTTTC
A M00241 Nkx2-5GCA
TTAATAT
ACG BG 0.351 0.662 0.636
Novel-5 None AC
GCCCTG
CGCCA
CAC Novel-6 None
TGCCT
ACG
TCCA
TGGG FG 0.354 0.670 0.622Novel-7 None C
TTTTTCACT
GCC
TGACT Novel-8 None TTTC
TACC
ACGAT
GTC
TAT BG 0.355 0.548 0.742
Novel-9 None TGGG
AGTG
GCA
TCGAG Novel-10 None CA
TGGGTG
AGCCT
CGC FG 0.355 0.682 0.608
Table 17: Five motif pairs with lowest classification error in Human Heart.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp-1 A
GACG
TA
TGGGC
AGGAG Novel-2 None GA
GAC
CGA
GTGGCG
TCG BG 0.389 0.454 0.768
Novel-3 None CA
CG
TGGAGT
GCGG
AAG Novel-4 None GGA
CTGC
GCG
AC
AGGT
C BG 0.390 0.444 0.776Novel-5 KROX G
TGCCT
CGT
TCCCA
CTC M00124 Pbx1b
TGAC
GCTA
GTAC
C
GA
C
TCCAATC
G
T
CA
C
GTA
CGTA
GCAT
GCAT BG 0.402 0.492 0.704
Novel-7 None CAAA
GGCCCA
TCGT
CCATC
G M00075 GATA-1ATGC
TACG
GACTG
C
TA
A
C
G
TCTAG
ATCG
ACTG
ACTG BG 0.404 0.496 0.696
Novel-9 NoneTAT
AGAG
CA
GAGC
GGAA M00985 Stra13
ATGC
AGCT
TACG
CGTCAT
CGTGTCAT
GC
AGTC
CGTA FG 0.405 0.412 0.778
Table 18: Five motif pairs with lowest classification error in Mouse Heart.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GC
GTAGA
GAG
AGGCT
G M00243 Egr-1CGTA
CAGT
AG
T
CA
GCGTA
GGGTACGG
T FG 0.394 0.536 0.676Novel-3 KROX GC
GTACGC
GGGGAC
CG M00941 MEF-2
TAG
TCGT
CCT
CTATATA
TATA
TGA
CTAG FG 0.401 0.524 0.674
Novel-5 Sp-1 TC
GCCCCA
TGCG
CACC Novel-6 None GT
GGAAGGC
GTGA
GCG FG 0.402 0.432 0.764
Novel-7 NoneCAAAG
TTA
GCT
TA
TAAC
A Novel-8 None CA
CAAGC
AT
TGCTC
GCG BG 0.403 0.464 0.730
Novel-9 KROX GGAGGGCT
GCG
TGC
G M00331 LV-TATAGTAC
GA
TCAG
TA
TCGA
CA
ACG
CTA
TA
AGC
GT
TAGC
AT
GA
GACCC
AG
ACAG
AAG
GTCA FG 0.403 0.486 0.708
Table 19: Five motif pairs with lowest classification error in Human Hypothalamus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GT
CGGC
AGCG
AG
AGGA
C M01013 IPF1GACT
ATCG
CATG
ACG
ACT
TACATC
TTAC
TAG
GCTA
ATCG
GACT
ATGC FG 0.374 0.516 0.736
Novel-3 None TG
CGC
GGCG
TCA
TGTCG Novel-4 None GGA
CTAGA
CTA
TGCC FG 0.380 0.492 0.748
Novel-5 None CGA
GGTAGA
GCAGC
GCG M00744 POU1F1
GTATGG
CTA
TATG
TAT
AGTA
CAT FG 0.382 0.548 0.688
Novel-7 None GGTAGT
GGAG
TG
TAG
CG Novel-8 None CT
ATGAGC
ATCAAA
GAG FG 0.384 0.482 0.750
Novel-9 None AC
AG
AC
ACC
GCTAGCG
C M00423 FOXJ2CGA
ACTA
CTAC
TAACT
GA
CGT
CT
GT
AGT
ACGT FG 0.385 0.546 0.684
Table 20: Five motif pairs with lowest classification error in Mouse Hypothalamus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None A
GGGCAGAG
TG
TAG
CG Novel-2 None T
GGAGCCCAG FG 0.370 0.462 0.798
Novel-3 None GCCA
CTGGGCA
TGTCG Novel-4 None T
GGGCTGCTG FG 0.381 0.476 0.762
Novel-5 None TAGA
GCGCCT
AAGC
GAC Novel-6 None C
GTAGGG
CCAGGCG
AC FG 0.381 0.564 0.674
Novel-7 None AGTTTTG
AT
TA
CGA
TA
CTA M00326 Pax-1 CCGTTA
CCGGCTCTAGATAT BG 0.383 0.624 0.610
Novel-9 None GCA
CGCCTGG Novel-10 None CCA
CGAGG
CCCT
CGC
G FG 0.384 0.588 0.644
Table 21: Five motif pairs with lowest classification error in Human Kidney.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None AC
GGAG
AGA
TACC
AATA Novel-2 PPAR AA
GGGGA
CAAC
AG
TGAG FG 0.389 0.396 0.826
Novel-3 None CG
GC
TCTG
CCT
GCTGA
G M00684 XPF-1GTCG
AT
TGG
ATAG
CGAC
AGC FG 0.389 0.460 0.762
Novel-5 None ATCTG
TGTCAG M00469 AP-2α GCCA
GTC
ATCG
TCAG
TCAG
TCAG
ATCG FG 0.392 0.690 0.526
Novel-7 None AGAC
GGC
GTCT
ACGAA
G M00206 HNF-1GTAGG
CT
CT
GA
GTA
ATC
GT
TCA
GATTG
CTA
GTAA
CATC
CTA
GCA FG 0.393 0.438 0.776
Novel-9 None CT
AGC
CA
TCT
CTCTGTA Novel-10 None T
CTC
TC
TCTA
GCTCCC
T FG 0.393 0.554 0.660
Table 22: Five motif pairs with lowest classification error in Mouse Kidney.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None CT
AGAG
ACG
ACA
TGAGG Novel-2 None C
TCA
GCT
AGAG
GC
ACTC
GAG FG 0.346 0.570 0.738Novel-3 None
AGGCA
TGGAG
CG
AT
TG Novel-4 None CCA
TGACG
ACCT
CCTA FG 0.355 0.566 0.724
Novel-5 NoneTGC
ACT
ACGCCA
TGGG Novel-6 None CATCT
AGAGGA
CCTC FG 0.358 0.482 0.802
Novel-7 None GCGGCTCGG
CCGG
C M00103 CloxCGAT
GCTA
CAGTATT
CGATG
ACT
C
GTA
CAGT
GACT
CAGT
CGAT BG 0.358 0.630 0.654
Novel-9 NoneCAT
GA
CTTTC
AT
TAAT
ACA Novel-10 None T
CGCCGG
CACT
GCGCG BG 0.359 0.570 0.712
Table 23: Five motif pairs with lowest classification error in Human Liver.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GC
GCG
TCC
GCG
AGC
GCG Novel-2 GABP CAGCC
TTCCG BG 0.325 0.654 0.696Novel-3 None C
GTCGC
GCG
CGCT
GGCG M00332 Whn
CGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT BG 0.329 0.682 0.660
Novel-5 None AG
TGC
GCG
TCC
GGCGGC Novel-6 None GT
CCGGA
CTGC
GACC
GG BG 0.332 0.572 0.764Novel-7 None C
GTGCGC
GCGC
GACGG
C Novel-8 None CGCG
AGGCG
CCGCA
TCG BG 0.332 0.598 0.738
Novel-9 None AGTGT
AGAGCT
CTCTT
G Novel-10 None AAGGC
ATCAAC
GAGGCA FG 0.379 0.530 0.712
Table 24: Five motif pairs with lowest classification error in Mouse Liver.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 HNF1
GTAAT
ACTA
CT
GATTT
AATA Novel-2 None
GA
GA
CAT
ATGTA
TTA
GAT
A BG 0.307 0.588 0.798Novel-3 None AT
ATA
GTC
ACTA
ATTT
ACAT Novel-4 None AC
AGTATA
TTGATG
ACA
CTA BG 0.307 0.610 0.776
Novel-5 MEF-2 AT
CGATTTAG
TA
CTA
CAAT
A M00102 CDPCGAT
GCTA
CAGTATA
TCGATG
ACT
C
T
GA
CAGT
G
ACT
CGAT
GCAT BG 0.308 0.640 0.744
Novel-7 None TCCG
CTA
CGCCA
TGCG Novel-8 None CT
ACGCCCA
CAGG
CAC FG 0.331 0.618 0.720
Novel-9 None ATGGAGTG
TGG
CGA
CG Novel-10 Sp-1 G
CCTCT
GCCCTACGG
C FG 0.339 0.532 0.790
Table 25: Five motif pairs with lowest classification error in Human Lung.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp-1
TCG
AGGT
GACGC
GGGAC Novel-2 None C
GGC
TC
CG
AGGC
GTAGG FG 0.334 0.706 0.626
Novel-3 Sp-1 GCG
TAG
AG
TGC
GCTGGG Novel-4 CAC-bind
CTGGGC
GATGGGA
GTCG FG 0.347 0.600 0.706
Novel-5 Sp-1 CGA
GAGGGC
AGGA
CTGG Novel-6 None GC
AGAGGC
GAC
CAG
AGG FG 0.347 0.602 0.704
Novel-7 None ACA
TAG
AACAT
ATCAT
A Novel-8 IRF ATACATGAATA BG 0.364 0.458 0.814
Novel-9 None TA
GT
GAAG
ATAATG
ATA Novel-10 None T
ACAGAT
GAATGG
TACT BG 0.365 0.472 0.798
Table 26: Five motif pairs with lowest classification error in Mouse Lung.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
TTGA
GCT
CT
GTCTTG
T Novel-2 None TTG
TGCCTGA
TG
AG
CG
CT FG 0.383 0.612 0.622
Novel-3 None TC
TC
TCTG
CTCA
CTGAG Novel-4 None AGC
GTAAG
CTA
CG
TAA
G FG 0.393 0.426 0.788Novel-5 None GGG
CGC
TCG
AGGGCG M00214 SEF-1
CGA
GA
TGC
CACC
GCG
CAC
GT
GA
GCTCTGC
TGGTATC BG 0.402 0.436 0.760
Novel-7 IRF AACGA
TAGT
AGAAC
ACT Novel-8 None AGC
GCAAA
GTC
TG
CGG
C FG 0.403 0.372 0.822Novel-9 None TG
CCGGC
GC
TCGG
CGC M00670 TCF-1
AGG
TGCA
GGTGTT BG 0.405 0.412 0.778
Table 27: Five motif pairs with lowest classification error in Human LymphNode.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GCT
GCTAC
CGGG
CCG
GC M00095 CDP
ATC
TC
TA
CATAT
ACT
GTCA
GGTA
CGAT BG 0.363 0.474 0.800
Novel-3 NoneTGG
CAC
TGC
GCGCAG
CG M00734 CIZ C
GAAAAATCGA
AGCT
GTAC BG 0.364 0.570 0.702
Novel-5 NoneACG
CG
ACGC
GTGGCGC
G Novel-6 None GGAGCT
GCGG BG 0.365 0.506 0.764Novel-7 None
TGCGG
CGC
TCCT
CCGG
C Novel-8 None CGCGGC
TCCC
GCGC BG 0.368 0.530 0.734
Novel-9 CAC-bind GAGG
ATGGA
CTAGA
GCG M00035 v-Maf
CGTA
CGAT
GCTA
G
ACT
T
AG
T
AC
ACT
A
CTG
GAT
CACGT
TGAC
C
GTA
A
TG
TAGC
TCGA
GATC
TGCA
TGCA FG 0.371 0.468 0.790
Table 28: Five motif pairs with lowest classification error in Mouse LymphNode.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00025 Elk-1
AGTC
ATGC
TGCA
CTGA
TGAC
TGACGGAT
ATCAG
AGCT
GTAC
GTAC M00695 ETF
TGA
GC
TGGA
CCGG BG 0.387 0.596 0.630
Novel-3 NoneATC
TCT
ATG
TACGTAC
AG Novel-4 Nrf-1 CGCAT
GGCG BG 0.392 0.364 0.852Novel-5 None AG
AGA
CAAT
CACGA
GTA
GT Novel-6 None G
AATG
ATAATG
ATGA
ATC
GAT FG 0.394 0.572 0.640
M00444 VDRAGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA Novel-8 None T
GGGCGG
CTGAGGA
CG FG 0.396 0.434 0.774
Novel-9 None TAGT
GGAGAA
GAG
TGTA Novel-10 None C
AAAGGC
AAGA
TA
CTG
TA FG 0.398 0.450 0.754
Table 29: Five motif pairs with lowest classification error in Human OlfactoryBulb.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 CAC-bind
ATC
TG
AGGGG
CTGGCG Novel-2 None A
CCATC
TCAT
AGC
GCATTGC FG 0.366 0.600 0.668
Novel-3 None CGC
GCG
AGGC
GGACGC Novel-4 None CA
CAGGG
CTGCC
ATGG
C FG 0.379 0.458 0.784M00773 MYB
CTGA
ATCG
CAGT
ACTG
ATCG
AGTC
TGCAGTG
TTCAG Novel-6 None C
TAAATCT
CCA BG 0.385 0.652 0.578Novel-7 None
CT
ATTT
ACATA
TC
ACCA Novel-8 None T
AATA
TTCTGA BG 0.389 0.438 0.784Novel-9 None AG
ACA
TCC
AAGA
GACA
T Novel-10 None GT
GTTG
TGTGC
GTTTG
T BG 0.391 0.520 0.698
Table 30: Five motif pairs with lowest classification error in Mouse OlfactoryBulb.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None T
CTGTCT
CTGAG
CA
GTCA Novel-2 None
CAT
CTTC
TTCA
GAT
AT
GTA FG 0.364 0.482 0.790
M00976 AHRHIFACGT
AG
A
CGTGGTAC
ATCG
TACG Novel-4 Sp1
CAG
AGGC
GCGAGGA
GC BG 0.364 0.544 0.728Novel-5 None G
TCACA
CGCCGTC
GCG Novel-6 None
AGG
CGCAC
TGGCC
GTC BG 0.368 0.564 0.700
Novel-7 None AC
TGG
CCACCCGG
CAG Novel-8 None
AG
AGAC
GGCCGGG
ACG BG 0.371 0.524 0.734
Novel-9 None TG
CG
CAGG
CCACCCA
G Novel-10 None GCGCC
GCG
CGGT
CGG BG 0.376 0.512 0.736
Table 31: Five motif pairs with lowest classification error in Human Ovary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00716 ZF5
TAG
TACG
CAG
TAGC
CTAG
AGTC
ACTGA
G Novel-2 Sp-1TAGGGT
CGGAG
CG
ACG
CG FG 0.295 0.740 0.670
M00079 Evi-1CGTA
TGAC
TAAGACT
CAG
A M00802 Pit-1GCTA
TCA
AT
CGTCC
TA
AT
CTGA
CTA
GAT
CGT
CGA
CAT
GCTA
GATC
GTCA
GATC
CTA BG 0.334 0.644 0.688
M00619 Alx-4 CCTGAGAATAATC Novel-6 MEF-2 AAAATACA
CTA
CT
GCTA BG 0.338 0.612 0.712
M00138 Oct-1CAGT
GACT
CGTA
ACGT
CTAG
CGTA
CGAT
GCAT
T
GCA
CGT
C
ATG
GATC
CTA
GTA
C
GA
CGAT
GCAT
GCTA
CGTA
CGTA
GTCA
ATCG
CGTA Novel-8 None A
TATC
ATTGTC
TTCTC
A BG 0.344 0.542 0.770M00616 AFP1 AA
TATAAT
CATG
AGCAT
C Novel-10 None ATA
TTAT
AT
GT
GAAAA BG 0.345 0.498 0.812
Table 32: Five motif pairs with lowest classification error in Mouse Ovary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00489 Nkx6-2
CTAG
CAT
TGA
GTATAAA
TAGT
CGTA
ACGT
ACGT M00976 AHRHIF
ACGT
AG
A
CGTGGTAC
ATCG
TACG BG 0.394 0.628 0.584
M00701 SMAD-3ACT
AGG
TCCTGA
CTCA
CT Novel-4 None C
GACG
TAGT
GTGCAA
GG FG 0.397 0.434 0.772Novel-5 None
AGC
ACT
ACGCCCAGT
G Novel-6 None CAGCT
ATGCCA
CCAG
C FG 0.399 0.522 0.680Novel-7 None GT
GCG
ACT
AGGCGAC
G Novel-8 None AGCGCAC
GAG FG 0.400 0.452 0.748M00698 HEB A
GCCTAGCTG Novel-10 None AT
GAG
AG
CGAGGA
GTCA FG 0.401 0.462 0.736
Table 33: Five motif pairs with lowest classification error in Human Pancreas.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00803 E2F
CG
CGCGG
CACTG Novel-2 GABP A
GCCTTCCGC
G BG 0.310 0.684 0.696M00144 BSAP
CAG
GA
TAC
ACG
GAT
AG
GTA
ACGT
GAT
GCT
GTC
CT
ACTG
GA
GAGCGG
TAG
TACA
CG
GA
CT
CGTA
ACG
TAC Novel-4 None
TACGGGCCGCG BG 0.317 0.752 0.614
Novel-5 None TCT
GTTT
CACTG
CATG
T Novel-6 None ATG
GA
CAAT
AC
TACAT
G FG 0.368 0.530 0.734M00342 Oct-1
G
ACTATG
A
CGAAG
ACAGT
TGAC Novel-8 None T
ATGGAT
AGAT
AGA
TGA FG 0.372 0.448 0.808
M00209 NF-YGCAT
GTCTGATTGGC
TACT
GAA
CG
ACT Novel-10 None T
AGCAGAGT
CA
CA
TAA
G FG 0.376 0.532 0.716
Table 34: Five motif pairs with lowest classification error in Mouse Pancreas.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
TCTC
TCAGA
CGTAGAC
G Novel-2 None GACT
CACT
CGCTCA
TTC BG 0.394 0.478 0.734
M00155 ARP-1CT
CG
CAA
GGTC
TCT
CACTTGG
AGAC
AC
TC
GTC
AT Novel-4 None AAT
ACAG
TTGC
GTA
CGA BG 0.395 0.412 0.798
M00313 GEN-INIATGC
ATGC
AGCT
TC
CAC
AGT
GAT
AGCT Novel-6 None GC
GCGAGT
CGAGCGC
G FG 0.397 0.432 0.774M00634 GCM
TAC
GTCA
ACGT
TAGCCA
CATGCAG
TAGT Novel-8 None A
TGGC
GCACC
TTCCAA
G BG 0.398 0.442 0.762Novel-9 None A
GTGGAGC
TAGT
CTGG Novel-10 None GA
CCAG
CGC
GAG
AGGT
CGG FG 0.400 0.370 0.830
Table 35: Five motif pairs with lowest classification error in Human Pituitary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00448 Zic1
ACGT
TCAG
ACTG
ACTG
ACGT
ATCG
ACG
AGCT
TGAC Novel-2 None T
GGGTCG
AT
AGA
TGAGG FG 0.385 0.606 0.624
Novel-3 None CACATA
TCTA
TAC
CAT
A Novel-4 None GAAC
AGATT
AGT
CA
CAA BG 0.392 0.462 0.754
M00761 p53decamerTCGA
AGG
AT
AGC
CGTA
CGTA
AGG
ACT
ATGC
AGTC Novel-6 Sp-1
AG
TGA
GGAC
CGGC
GAGC FG 0.393 0.468 0.746
M00419 MEIS1GATC
GCTA
TCAG
AGTG
GTACAA
TCG
CTAG
CAGT
ATGC Novel-8 Sp-1 C
GTGGGGT
CGATG
TGA
G FG 0.394 0.500 0.712M00312 Bel-1
GTA
GAT
GCA
TAC
C
ATGCTT
GAGTC
TAG
GTC
CGAT
ATG
GAC
CAG
ATCG
CTG
ACTG
GTCAT
CGAT
GCAT
GTC
AGC
GCA
GCA Novel-10 Sp-1 C
AGGCAG
AGGT
CGTGA
G FG 0.398 0.428 0.776
Table 36: Five motif pairs with lowest classification error in Mouse Pituitary.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp-1
TGGGGA
GCAGGC
AG
AG Novel-2 None CTCCT
CGC
GC
AGCCG
C FG 0.358 0.542 0.742M00040 CRE-BP1 TG
TACAGTT
CA
CA Novel-4 None AC
AGCAT
GATTTTG
ATA
TA BG 0.361 0.600 0.678
Novel-5 MAZR AG
TGGG
CGAGA
GGGAC Novel-6 None CCG
AGGGAG FG 0.363 0.632 0.642Novel-7 Sp-1 GA
GGTGA
GTCGA
GGCG Novel-8 None GGAA
CG
ACCT
CCGA
GCG FG 0.363 0.652 0.622
M00465 POU6F1CAG
TAC
TA
AT
CTA
CGAA
TTATAG
T Novel-10 None TTAT
AGT
CTAT
GAAG
ACA BG 0.364 0.526 0.746
Table 37: Five motif pairs with lowest classification error in Human Placenta.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00616 AFP1 AA
TATAAT
CATG
AGCAT
C Novel-2 None GGTC
TACA
CATG
TGA
CC BG 0.387 0.386 0.840Novel-3 NF-muE1 ATGGCC
GGAC Novel-4 Nrf-1 CGCC
AGCTGCGT
CCGA BG 0.387 0.428 0.798
M00102 CDPCGAT
GCTA
CAGTATA
TCGATG
ACT
C
T
GA
CAGT
G
ACT
CGAT
GCAT Novel-6 None AA
GGCTC
TCGA
AGCCC
T BG 0.392 0.540 0.676Novel-7 None C
TCTCG
AT
ATC
GTCA
TG Novel-8 NoneCTG
CTCCA
TAGTG
CCTCTA
G FG 0.393 0.394 0.820M00626 RFX1 A
CAG
ATCT
GA
AC
GCT
CTAT
GAGG
CGTA
CAA
C Novel-10 None CG
GA
AGGA
CTCAGC
GCG BG 0.393 0.454 0.760
Table 38: Five motif pairs with lowest classification error in Mouse Placenta.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00444 VDR
AGA
GTGG
TTACG
CGTA
CAG
ACTG
CTAG
TAG
AGT
GCGAT
TCG
CGTA Novel-2 None GT
CGCCA
CTGGCC
TCG FG 0.372 0.550 0.706
Novel-3 NoneAGC
ACA
GGCGCG
TGGG Novel-4 None CCATGGGGCCTC
GGC FG 0.375 0.514 0.736
Novel-5 None TA
CA
GA
TCAAG
TGAA
TTCT Novel-6 None G
AACAG
ACGA
TGAT
ACAGT BG 0.377 0.440 0.806
Novel-7 None CTGCC
ACCTCCG
CA
AG Novel-8 None ATGGT
CGCA
CACA
GCCCAC FG 0.380 0.508 0.732
Novel-9 None AGCAT
GAAAG
TA
CTA
TCTA Novel-10 None AAAG
TCAATTG
T BG 0.381 0.566 0.672
Table 39: Five motif pairs with lowest classification error in Human Prostate.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00099 S8
CGAT
GCAT
CAGT
CGTA
TGAC
GACT
A
TC
CGAATTAC
TGA
AGTC
ATGC
CGAT Novel-2 Sp1
TCG
AGGGCT
GGGACG
TC FG 0.384 0.490 0.742
M01000 AIRECG
ACGTTC
TATA
TGTA
CTA
CGT
ACTGG
GAT
CT
GA
CGT
CGA
CTTC
TG
ACGC
GT
CGTG
TA Novel-4 None
CA
CAATG
AACAT
ACAT
A BG 0.385 0.454 0.776M00476 FOXO4
GTCA
ACGT
CTGTTGTTC
AT
TA
TCT
ACG
GCAT
ACGT Novel-6 None C
GAC
TGC
GCAGGT
CGGG FG 0.385 0.570 0.660M00793 YY1
ATG
AGC
TC
CGA
CGT
AGTC
CAGT
ACGT
ACTG Novel-8 Sp1 C
GAGC
GACG
TGGGCA
GG FG 0.387 0.620 0.606Novel-9 MEF-2 C
TGCTTTTC
AGAAG
AGA Novel-10 None
CGGT
CTGGGCT
GAGC
G FG 0.393 0.626 0.588
Table 40: Five motif pairs with lowest classification error in Mouse Prostate.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00939 E2F
GACT
AGT
AGCT
A
CG
CGCGG
CACTG Novel-2 KROX
AGCCGCCC
TGC
TC
AG
AC BG 0.320 0.740 0.620
Novel-3 Sp-1AGA
GGGCGGTGA
GAC Novel-4 None G
TCACGCCC
TGC
GC
GC BG 0.322 0.712 0.644
M00978 LEF1TCF1TGAC
GC
ACTTTA
GTA
AT
ACG
GACT
AGCT Novel-6 None AT
AATTC
GAAC
AACGA
CTA FG 0.324 0.546 0.806
Novel-7 None AGTA
AT
CGA
CT
ATTTG
TCA Novel-8 Oct-1 TTA
TCTCAT
ATA FG 0.327 0.546 0.800
Novel-9 Sp1 GGCGCGGGT
CTCG
CG Novel-10 None GC
GAGT
CGT
AG
GC
GAGG BG 0.327 0.750 0.596
Table 41: Five motif pairs with lowest classification error in Human SalivaryGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None GG
AATC
TCA
TAG
AAGGC Novel-2 None GGAA
GGCCG
CG BG 0.362 0.626 0.650
Novel-3 None GAG
CAGC
GGC
CGAGAA
G Novel-4 None GGCGTAGGCG BG 0.363 0.674 0.600
M00104 CDP-CR1CGTA
CA
GACT
GTC
CTAG
CTA
CGT
AGTC
ATCG
ATGC Novel-6 Nrf-1 GCGG
CCA
TGC
AGCC
GTC BG 0.369 0.706 0.556
M00803 E2FCG
CGCGG
CACTG Novel-8 NRF-2 A
GTCCGGG
AAG BG 0.374 0.728 0.524M00109 C/EBPβ
CTGA
CATG
TCGA
AT
AGT
TAG
CAGTGT
AC
CAAC
AGT
TACG
ACGT Novel-10 None TG
ATGAAG
AAGT
GA
TAA FG 0.384 0.414 0.818
Table 42: Five motif pairs with lowest classification error in Mouse SalivaryGland.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None G
CTA
GC
ATTCCGG
CGC Novel-2 Nrf-1
AGCGCT
GCA
GTGCGT
C BG 0.334 0.656 0.676M00227 v-Myb
AGCT
TAGC
CTAAC
CTGGA
TC M00939 E2F
GACT
AGT
AGCT
A
CG
CGCGG
CACTG BG 0.337 0.700 0.626
M00221 SREBP-1CGT
GATCACCCCAC Novel-6 GABP CG
ACTTCCTGC
GAGTC BG 0.348 0.492 0.812
M00238 BarbieBoxGCTA
CAGT
GTAC
CGTAAAAGA
TGC
GCAT
ACTG
CTAG
CGTA
ATG
CTAG Novel-8 Sp-1 GA
CGGGGCG BG 0.348 0.722 0.582Novel-9 Sp-1 A
GAG
ATC
TCCCGCCT
C Novel-10 None GCGGAC
ACGCCGG
C BG 0.348 0.742 0.562
Table 43: Five motif pairs with lowest classification error in Human SkeletalMuscle.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00773 MYB
CTGA
ATCG
CAGT
ACTG
ATCG
AGTC
TGCAGTG
TTCAG Novel-2 ISRE G
AGAAAT
GAAT
CGAAG
A BG 0.385 0.678 0.552Novel-3 None G
ATACA
TTCAG
AACA
TA Novel-4 None AAG
AGAT
GGAAAT
ATGA BG 0.392 0.448 0.768
Novel-5 None ACT
CTCT
AGAG
GA
CGAG Novel-6 None
GCTCT
CCCAT
GCCA
C FG 0.393 0.456 0.758Novel-7 None T
ACTAGG
TTA
GT
TCTA
G Novel-8 NoneTAG
TAGGGAGA
GAGGT
A FG 0.397 0.444 0.762Novel-9 None A
CCGTCTGTG
CTC
TC
TC Novel-10 None C
GTGGGC
GAGACG
TGC
G FG 0.399 0.434 0.768
Table 44: Five motif pairs with lowest classification error in Mouse SkeletalMuscle.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00481 AR
CTAG
T
GCGAT
CTAC
CTGA
ACTG
ACTG
CTAG
ACTG
AGTC
AGT
AC
AGCT Novel-2 None ATT
GGTCCCT
CAGC
GC FG 0.364 0.504 0.768Novel-3 None
GTTG
TGTAAC
AGA
GTA
CTA Novel-4 OCT-x T
AGCAAAATT
G BG 0.368 0.444 0.820Novel-5 None A
TTCT
CAT
GTAT
AACA
CTA Novel-6 HP1 ATAA
TTCT
GCTTAC
ACAT
A BG 0.371 0.500 0.758Novel-7 None AG
CCTTG
TCAT
TA
TATATA Novel-8 None TTA
TGAT
ATA
GAT
AAT
GT BG 0.372 0.510 0.746
M00332 WhnCGTA
TCGA
AGTC
TACGACGCA
GCT
CGAT
ACGT Novel-10 None C
GCT
TGAG
AGTCT
CCAG FG 0.373 0.534 0.720
Table 45: Five motif pairs with lowest classification error in Human Testis.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00795 Octamer
CAGT
CATG
GCTA
CAT
GCAT
CGAT
CTAG
TAC
TA
A
C
GTCGTA Novel-2 None A
TGACA
GCA
ATCAT
CTA FG 0.376 0.482 0.766
M00532 RP58ACTG
TCGA
CA
GACAG
TG
CTGCTG
GCA Novel-4 None GT
GC
GCGCT
GCGCG
CCG BG 0.381 0.470 0.768
M00141 Lyf-1CGT
CT
ACT
AG
AG
CGG
ATAGG
A Novel-6 None ATAC
ACGTCAT
CAGA
TA FG 0.382 0.458 0.778
Novel-7 NoneAG
TCG
GCCGCCG
TCGG
C Novel-8 NoneCAGGC
GGTACGGC
AGCG BG 0.386 0.424 0.804
Table 46: Five motif pairs with lowest classification error in Mouse Testis.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None T
AGTA
GA
GA
CAG
ATTA
TAA Novel-2 None T
AGAAT
GA
TG
GAAT
ACGAT BG 0.355 0.532 0.758
M00045 E4BP4GTAC
CAG
ATG
TACT
AGTAAG
TC
CTAG Novel-4 None C
AATTA
TCTC
TTA
CAAT
A BG 0.355 0.590 0.700Novel-5 None TG
ATTG
TCTC
AATA
CTA
TA Novel-6 None G
AGTA
GAT
AATGTTC
AGAT BG 0.364 0.474 0.798
Novel-7 None GAGA
GGCTT
GCAGGG
C Novel-8 None TGGA
GGCGC
AC
CG
CGG FG 0.364 0.482 0.790
Novel-9 None ATAT
ACATTA
TGTA
GAGT
A Novel-10 None TA
GTAAT
GCGAAT
AATTG
T BG 0.368 0.498 0.766
Table 47: Five motif pairs with lowest classification error in Human Thymus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG Novel-2 None AAG
ATC
TCA
TAAAC
AGC FG 0.350 0.608 0.692
Novel-3 Sp-1CGGGT
CGTG
TG
TAGCG
C Novel-4 GABP CGACTTCCC
G FG 0.374 0.518 0.734M00476 FOXO4
GTCA
ACGT
CTGTTGTTC
AT
TA
TCT
ACG
GCAT
ACGT Novel-6 None A
TCGCA
GCTAT
GCGG
CG FG 0.379 0.446 0.796Novel-7 None C
AAAACCA
CA
GA
TGA
TA Novel-8 Sp-1 C
AAG
TAGGGGCGT
GAG FG 0.381 0.462 0.776
Novel-9 None CTCTC
TCTTG
ACG
TA
AG Novel-10 None
AGC
CTCA
TTCTC
GGCAG BG 0.392 0.332 0.884
Table 48: Five motif pairs with lowest classification error in Mouse Thymus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None C
GTCTGG
AAG
CGCC
AG Novel-2 None CCG
GTGA
CCGCCA
GCTCC
G FG 0.379 0.454 0.788M01017 PBX1
TGCA
AGTC
TGCA
ACT
AC
TCA
CTGA
GCAT
GTC
CTGA
CGAT
CTAG Novel-4 Sp1 GC
GCAGC
GAGGCC
GG FG 0.379 0.570 0.672M00652 Nrf-1 CA
GCTGATGCGCG
A Novel-6 Sp-1 TGGG
CCAGT
GAGC
AGC FG 0.390 0.516 0.704M00331 LV-TATA
GTAC
GA
TCAG
TA
TCGA
CA
ACG
CTA
TA
AGC
GT
TAGC
AT
GA
GACCC
AG
ACAG
AAG
GTCA Novel-8 None GCCGCT
GGG FG 0.390 0.534 0.686M00105 CDP-CR3
AGC
GCA
AGCG
AC
TCGA
GA
ACGT
TCGA
GACT
TCAG
CTATT
CGG Novel-10 Sp-1
ATGGGGCT
GGTGGA
C FG 0.391 0.508 0.710
Table 49: Five motif pairs with lowest classification error in Human Thyroid.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 AP-2 C
AAGATGAAC
TGAT
ACA Novel-2 None CGCCCGA
TGCC BG 0.331 0.780 0.558
M00657 PTF1β GAG
AGG
AAACA
GTC
GTC
GATCC
AAGC
G Novel-4 None GCGC
GCTCC
GCCGG
CGC BG 0.333 0.716 0.618
Novel-5 None TA
GTA
GT
GAAAAG
TATA Novel-6 Nrf-1 GCGCA
CCGTGC BG 0.333 0.726 0.608
Novel-7 Sp-1 GAAC
ATGGA
CA
CAT
AAG Novel-8 None GGCCGCGT
ACG BG 0.334 0.696 0.636
Novel-9 GABP AGCTG
TCCGCG Novel-10 None G
CCGC
GCGG
CCGC
GC
CG BG 0.340 0.564 0.756
Table 50: Five motif pairs with lowest classification error in Mouse Thyroid.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None TTA
GC
CTTG
TGT
CAAC
AG Novel-2 None CAGC
AGCTG FG 0.391 0.402 0.816M00241 Nkx2-5
GCA
TTAATAT
ACG Novel-4 None
ACTTT
CCATCTT
CTGCC FG 0.393 0.450 0.764
M00801 CREBAGTC
C
T
A
GCTC
C
T
AACGT Novel-6 None
CGG
AAG
CGCC
TAGAGG BG 0.397 0.402 0.804
Novel-7 None ACTT
CTTGGAC
A Novel-8 NoneGTCT
CCTC
TTCCTT
CTC FG 0.398 0.466 0.738
M00626 RFX1 AC
AG
AT
CT
GA
AC
GCT
CTA
TG
AGG
CGTA
CAA
C Novel-10 ISRE TAC
ATC
TCTTT
CTCCC
T FG 0.399 0.484 0.718
Table 51: Five motif pairs with lowest classification error in Human Trachea.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None C
AAACAT
CATA
TCAAC
A Novel-2 None GT
GCT
CTCCA
TGCCCCATG
C FG 0.387 0.410 0.816Novel-3 HFH-4 AG
ATACAAC
ACCA
GCAA Novel-4 Sp-1 GA
GGTG
TGA
CTGGA
GCG FG 0.387 0.534 0.692
Novel-5 NoneCTT
GCT
CTG
TGCTTA
TG Novel-6 None AGGCTAGGA
GC FG 0.388 0.514 0.710M00665 Sp3 AT
CG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG Novel-8 None
GCA
GC
GCT
AGGCTCGT
G FG 0.393 0.514 0.700Novel-9 None A
GAGC
GATC
AC
CAGGGC Novel-10 None
CAAC
ACAC
ACAC
AAACACC
A FG 0.396 0.624 0.584
Table 52: Five motif pairs with lowest classification error in Mouse Trachea.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00918 E2F
AGCT
AGT
AGCTC
GCGCGG
CATCG Novel-2 None
CT
ACG
CTAG
AGTCCCC
A BG 0.326 0.668 0.680Novel-3 None
CTAGGCC
TGCG
CTAGT Novel-4 Nrf-1 CGCC
ACGTGCGCC
AG BG 0.329 0.708 0.634
M00651 NF-muE1GCC
GGCCATTC
GT Novel-6 None CGG
CGCCCCGG
CAGC BG 0.337 0.718 0.608
Novel-7 None GGCGCCGCG Novel-8 GABP CCGGAAGT
C BG 0.339 0.736 0.586Novel-9 None AT
CAAT
GCG
TAG
AAGA
TA Novel-10 HNF-3β ATA
TAT
GAT
CT
CTC
TAT
CA FG 0.341 0.536 0.782
Table 53: Five motif pairs with lowest classification error in Human TrigeminalGanglion.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 None AAAG
AGTAT
ACGA
CGTA Novel-2 None AA
TTAT
GAT
GCTTTG
CT BG 0.396 0.466 0.742Novel-3 None C
AACG
TAGGGC
AAGGA
G Novel-4 None AGACTATGACA FG 0.398 0.476 0.728
M00999 AIREGCAT
CAT
CGTA
CAGT
CAGT
GCTA
GTCA
GACT
CGATGGC
ATGCATC
GTA
CGAT
CGTA
CGAT
GCATGGC
GAT
AGCT
CGTA
GCTA
GCTA
CGAT Novel-6 None AGCT
AAGGC
GCTA
AG
AG FG 0.400 0.386 0.814
M00809 FOXCTG
GTA
GCAT
GTA
GTAGT
GTG
ACT
CT
GAT
GTA Novel-8 CACCC-bind T
ATGA
GGTGGT
AAG
CGG FG 0.400 0.426 0.774
M00405 MEF-2AGC
AGT
TCG
CAGT
ACTTAT
AATA
TA
CAT
CGA
GAC
AGTC
ATC Novel-10 None
CGAAGT
GCGAAAA
GGGA FG 0.402 0.434 0.762
Table 54: Five motif pairs with lowest classification error in Mouse TrigeminalGanglion.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecM00237 AhR-Arnt
CTAG
CTAG
ATCG
ACTG
TGA
GTT
CGCGTGTCA
ATGC
GTA
CTGA
TCG
TGCC Novel-2 None AG
AACATC
TTAC FG 0.385 0.612 0.618
M00721 CACCC-bindTCG
ACAGT
GTC
GAC
AGTC
ACGT
ATGGGG
TGAGT
AG
CG Novel-4 None GT
AGTGCA
TGGA
CGC
G BG 0.386 0.522 0.706M00978 LEF1TCF1
TGAC
GC
ACTTTA
GTA
AT
ACG
GACT
AGCT Novel-6 None T
AATGTTC
AAGA FG 0.388 0.504 0.720
M00277 Lmo2ATGC
ATCG
TAGCCAA
TG
ACGTGG
TC
GCAT
ATCG Novel-8 None GC
GTAC
TTGA
GCAC
GAG BG 0.389 0.498 0.724
Novel-9 Lyf-1 GA
TCC
TTCTGGA
GTAT
G Novel-10 None GCTGC
GCTCA BG 0.391 0.548 0.670
Table 55: Five motif pairs with lowest classification error in Human Uterus.
Accession Factor Logo Accession Factor Logo Enrich Error Sens SpecNovel-1 Sp-1
AGGGT
CGCGA
GGACG
CG Novel-2 None GGG
CGTGGA
CC FG 0.348 0.748 0.556Novel-3 None GGA
CCAGCGT
G Novel-4 None GCGCG
TGGAAG FG 0.349 0.678 0.624
Novel-5 CACCC-bindGCCT
AGC
AGCCCCT
AGC Novel-6 Sp-1 GGCGGGT
CAGC FG 0.350 0.672 0.628
Novel-7 Sp-1 TC
ACA
CTGCCCT
AC
TGC Novel-8 None A
GAGGC
GCTAGA
GTA
CG FG 0.353 0.656 0.638
M00665 Sp3 ATCG
TAC
AC
CGT
AGT
CG
TGGA
CG
CGA
AG
CGG Novel-10 Sp-1 GC
GAG
CG
TGT
CTGGA
GG FG 0.355 0.614 0.676
Table 56: Five motif pairs with lowest classification error in Mouse Uterus.