42 47 4825. book review: "introduction to a submolecular biology" by albert szent-gyorgyi,...
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PUBLICATIONS - I. TINOCO, JR.
1. The Conversion of Fibrinogen to Fibrin. XII. Influence of pH, Ionic Strength and Hexamethylene Glycol Concentration on the Polymerization of Fibrinogen, S. Shulman, J. D.
Ferry and I. Tinoco, Jr., Arch. Biochem. Biophys. 42, 245-256 (1953).
2. The Conversion of Fibrinogen to Fibrin. XIV. The Effect of Calcium on the Formation and Dissociation of Intermediate Polymers, S. Katz, S. Shulman, I. Tinoco, Jr., I. H. Billick, K.
Gutfreund and J. D. Ferry, Arch. Biochem. Biophys. 47, 165-173 (1953).
3. The Conversion of Fibrinogen to Fibrin. XV. Sedimentation Studies of the Polymerization of Fibrinogen at High pH, I. Tinoco, Jr. and J. D. Ferry, Arch. Biochem. Biophys.
48, 7-16 (1954).
4. Some Aspects of the Polymerization of Fibrinogen, J. D. Ferry, S. Katz, and I. Tinoco,
Jr., J. Polymer Sci. 12, 509-516 (1954).
5. The Site of Attack by Thrombin on Fibrinogen, I. Tinoco, Jr. and J. D. Ferry, J. Amer.
Chem. Soc. 76, 5573 (1954).
6. The Conversion of Fibrinogen to Fibrin. XVI. Electrical Birefringence of Fibrinogen
and Activated Fibrinogen, I. Tinoco, Jr., J. Amer. Chem. Soc. 77, 3476-3480 (1955).
7. The Dynamic Electrical Birefringence of Rigid Macromolecules, I. Tinoco, Jr., J. Amer.
Chem. Soc. 77, 4486-4489 (1955).
8. Small-Angle X-ray Scattering of Iodinated Bovine Serum Albumin, L. A. Siegel and I.
Tinoco, Jr., J. Polymer Sci. 21, 335-338 (1956).
9. The Influence of an External Electric Field on the Optical Activity of Fluids, I. Tinoco,
Jr. and W. G. Hammerle, J. Phys. Chem. 60, 1619-1623 (1956).
10. Diffusion of Isoionic, Salt-Free Bovine Serum Albumin, I. Tinoco, Jr. and P. A. Lyons,
J. Phys. Chem. 60, 1342-1343 (1956).
11. Light Scattering of Isoionic Conalbumin, S. N. Timasheff and I. Tinoco, Jr., Arch.
Biochem. Biophys. 66, 427-437 (1957).
12. The Polymerization of Enzymatically Active α-Chymotrypsin, I. Tinoco, Jr., Arch.
Biochem. Biophys. 68, 367-372 (1957).
13. Optical Activity of a Solution of Macromolecules in a Hydrodynamic Field, I. Tinoco,
Jr., J. Chem. Phys. 26, 1356-1357 (1957).
14. The Change of Optical Activity of Poly-γ-Benzyl-L-Glutamate in an Electric Field, I.
Tinoco, Jr., J. Am. Chem. Soc. 79, 4248 (1957).
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15. Dynamic Electrical Birefringence Studies of Poly-γ-Benzyl-L-Glutamate, I. Tinoco,
Jr., J. Am. Chem. Soc. 79, 4336-4338 (1957).
16. The Optical Activity of Oriented Copper Helices. I. Experimental, I. Tinoco, Jr. and M.
P. Freeman, J. Phys. Chem. 61, 1196-1200 (1957).
17. The α-Chymotrypsin Catalyzed Hydrolysis of Ethyl Lactate, I. Tinoco, Jr. Arch.
Biochem. Biophys.76, 148-160 (1958).
18. The Reversing Pulse Technique in Electric Birefringence, I. Tinoco, Jr. and K.
Yamoka, J. Phys. Chem. 63, 423-427 (1959).
19. The Optical Rotation of Oriented Helices. I. Electrical Orientation of Poly-γ-Benzyl-L-
Glutamate in Ethylene Dichloride, I. Tinoco, Jr., J. Am. Chem. Soc. 81, 1540-1544 (1959).
20. Optical Rotation of Oriented Helices. II. Calculation of the Rotatory Dispersion of the
Alpha Helix, I. Tinoco, Jr. and R. W. Woody, J. Chem. Phys.32, 461-467 (1960).
21. Hypochromism in Polynucleotides, I. Tinoco, Jr., J. Am. Chem. Soc. 82, 4785-4790
(1960). Erratum: J. Am. Chem. Soc. 84, 5047 (1961).
22. Optical and Other Electronic Properties of Polymers, I. Tinoco, Jr., J. Chem. Phys. 33
1332-1334 (1960). Erratum: J. Chem. Phys. 34, 1067 (1961).
23. The Effect of Chain Length Upon Hypochromism in Nucleic Acids and
Polynucleotides, A. Rich and I. Tinoco, Jr., J. Am. Chem. Soc. 82, 6409-6410 (1960).
24. Optical Rotation and Polypeptide Structure, I. Tinoco, Jr., R. W. Woody and K.
Yamaoka, Tetrahedron 13, 134-142 (1961).
25. Book Review: "Introduction to a Submolecular Biology" by Albert Szent-Gyorgyi,
Academic Press, N. Y., 1960 Arch. Biochem. Biophys. 94, 548 (1961).
26. The Relation between Conformation and Light Absorption in Polypeptides and Proteins, I. Tinoco, Jr., A. Halpern and W. T. Simpson, Polyamino Acids, Polypetides, and
Proteins, M. A. Stahmann, Ediotr, U. of Wisconsin Press, Madison, Wisconsin, 147-160 (1962).
27. The Stability of Helical Polynucleotides: Base Contributions, H. DeVoe and I. Tinoco,
Jr., J. Mol. Biol. 4, 500-517 (1962).
28. The Hypochromism of Helical Polynucleotides, H. DeVoe and I. Tinoco, Jr., J. Mol.
Biol. 4, 518-527 (1962).
29. Charge Distribution of Fibrinogen as Determined by Transient Electric Birefringence
Studies, A. E. V. Haschemeyer and I. Tinoco, Jr., Biochemistry 1, 996-1004 (1962).
30. Theoretical Aspects of Optical Activity. Part Two: Polymers, I. Tinoco, Jr., Advances
in Chemical Physics 4, 113-160 (1962), Interscience Publishers, New York.
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31. A General Method for Determination of Nucleotide Sequences in Nucleic Acids, S.
Mandeles and I. Tinoco, Jr., Biopolymers 1, 183-190 (1963).
32. Absorption and Rotation of Light by Helical Polymers: The Effect of Chain Length, I.
Tinoco, Jr., R. W. Woody and D. F. Bradley, J. Chem. Phys. 38, 1317-1325 (1963).
33. Absorption and Rotation of Light by Helical Oligomers: The Nearest Neighbor
Approximation, D. F. Bradley, I. Tinoco, Jr. and R. W. Woody, Biopolymers 1, 239-267 (1963).
34. The Exciton Contribution to the Optical Rotation of Polymers, I. Tinoco, Jr., Radiation
Research 20, 133-139 (1963).
35. Electrical Birefringence at High Fields, D. N. Holcomb and I. Tinoco, Jr., J. Phys.
Chem. 67, 2691-2698 (1963).
36. The Influence of Static Electric and Magnetic Fields on the Optical Properties of
Polymers, I. Tinoco, Jr. and C. A. Bush, Biopolymers Symposia No.1, 235-250 (1964).
37. Optical Rotation of Oriented Helices. IV. A Free Electron on a Helix, I. Tinoco, Jr.
and R. W. Woody, J. Chem. Phys. 40, 160-165 (1964).
38. Circular Dichroism and Rotatory Dispersion Curves for Helices, I. Tinoco, Jr., J. Am.
Chem. Soc. 86, 297-298 (1964).
39. Exoenzyme Kinetics with Applications to the Determination of Nucleotide Sequences,
C. R. Cantor, I. Tinoco, Jr. and L. Peller, Biopolymers 2, 51-63 (1964).
40. Nucleic Acids, I. Tinoco, Jr. and D. N. Holcomb, Annual Review of Physical
Chemistry 15, 371-394 (1964).
41. Correlations in the Ultraviolet Spectra of the Purine and Pyrimidine Bases, L. B. Clark
and I. Tinoco, Jr., J. Am. Chem. Soc. 87, 11-15 (1965).
42. The Optical Rotatory Dispersion of Adenyl (3'-5') Adenosine and its Significance for Polynucleotide Rotations, M. M. Warshaw, C. A. Bush and I. Tinoco, Jr., Biochem. Biophys.
Res. Commun. 18, 633-638 (1965).
43. Conformation of Polyriboadenylic Acid: pH and Temperature Dependence, D. N.
Holcomb and I. Tinoco, Jr., Biopolymers 3, 121-133 (1965).
44. Optical Rotatory Dispersion of Bacteriophages, M. F. Maestre and I. Tinoco, Jr., J.
Mol. Biol. 12, 287-289 (1965).
45. Absorption and Optical Rotatory Dispersion of Six Dinucleoside Phosphates, M. M.
Warshaw and I. Tinoco, Jr., J. Mol. Biol. 13, 54-64 (1965).
46. Absorption and Optical Rotatory Dispersion of Seven Trinucleoside Diphosphates, C.
R. Cantor and I. Tinoco, Jr., J. Mol. Biol. 13, 65-77 (1965).
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47. Absorption and Rotation of Polarized Light by Polymers, I. Tinoco, Jr., Molecular
Biophysics, B. Pullman and M. Weissbluth, Editors, Academic Press, Inc., 269-291 (1965).
48. Vapor Spectra and Heats of Vaporization of Some Purine and Pyrimidine Bases, L. B.
Clark, G. G. Peschel and I. Tinoco, Jr., J. Phys. Chem. 69, 3615-3618 (1965).
49. Book Review: Molecular Orbitals in Chemistry, Physics and Biology - A Tribute to R.
S. Mulliken, Arch. Biochem. Biophys. 111, 479 (1965).
50. RNA: Structures and Optical Properties. Acceptance Address, California Section
Award, American Chemical Society, Vortex 26, 318 (1965).
51. Ultra-Violet Absorption Spectrum of Thymine in Ice, S. L. Davis and I. Tinoco, Jr.,
Nature 210, 1286 (1966).
52. Optical Properties of Sixteen Dinucleoside Phosphates, M. M. Warshaw and I. Tinoco,
Jr., J. Mol. Biol. 20, 29-38 (1966).
53. Optical Properties of Ribonucleic Acids Predicted from Oligomers, C. R. Cantor, S. R.
Jaskunas and I. Tinoco, Jr., J. Mol. Biol. 20, 39-62 (1966).
54. Calculation of the Optical Rotatory Dispersion of Dinucleoside Phosphates. Appendix. Derivation of the ORD and CD Curves from Absorption and Rotational Strengths, C. A. Bush
and I. Tinoco, Jr., J. Mol. Biol. 23, 601-614 (1967).
55. Optical Rotatory Dispersion of Viruses, M. F. Maestre and I. Tinoco, Jr., J. Mol. Biol.
23, 323-335 (1967).
56. Application of Matrix Rank Analysis to the Optical Rotatory Dispersion of TMV
RNA, D. W. McMullen, S. R. Jaskunas and I. Tinoco, Jr., Biopolymers 5, 589-613 (1967).
57. Calculated Optical Properties of 64 Trinucleoside Diphosphates, C. R. Cantor and I.
Tinoco, Jr., Biopolymers 5, 821-835 (1967).
58. Optical Rotation of Oriented Helices. III. Calculation of the Rotatory Dispersion and Circular Dichroism of the Alpha- and 310-Helix, R. W. Woody and I. Tinoco, Jr., J. Chem. Phys.
46, 4927-4945 (1967).
59. Temperature-Dependent Properties of Dinucleoside Phosphates, R. C. Davis and I.
Tinoco, Jr., Biopolymers 6, 223-242 (1968).
60. Base-Base Interactions in Nucleic Acids, I. Tinoco, Jr., R. C. Davis and S. R. Jaskunas, Molecular Associations in Biology, B. Pullman, Editor, Academic Press, Inc., New York, 77-92 (1968).
61. Temperature-Dependent Optical Properties of a Torsional Oscillator Model for
Dinucleoside Phosphates, D. Glaubiger, D. A. Lloyd, and I. Tinoco, Jr., Biopolymers 6, 409-414 (1968).
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62. The Optical Properties of Polynucleotides, I. Tinoco, Jr., J. Chimie Physique 65, 91-97 (1968).
63. Enzymatic Synthesis of Oligoguanylic Acids Containing 2'-5' Phosphodiester
Linkages, S. K. Podder and I. Tinoco, Jr., Biochem. Biophys. Res. Comm. 34, 569-574 (1969).
64. Association of Complementary Oligoribonucleotides in Aqueous Solution, S. R.
Jaskunas, C. R. Cantor, and I. Tinoco, Jr., Biochemistry 7, 3164-3178 (1968).
65. Circular Dichroism of Polynucleotides: A Simple Theory, W. C. Johnson, Jr., and I.
Tinoco, Jr., Biopolymers 7, 727-749 (1969).
66. Circular Dichroism of Polynucleotides: A General Method Applied to Dimers, W. C.
Johnson, Jr. and I. Tinoco, Jr., Biopolymers 8, 715-731 (1969).
67. A New Approach to the Study of Sequence-Dependent Properties of Polynucleotides,
D. M. Gray and I. Tinoco, Jr., Biopolymers 9, 223-244 (1970).
68. Application of Optical Rotatory Dispersion and Circular Dichroism to the Study of
Biopolymers, I. Tinoco, Jr. and C. R. Cantor, Methods of Biochemical Analysis 18, D. Glick, Editor, John Wiley and Sons, New York, 1970.
69. Minor Nucleoside in RNA: Optical Studies of Dinucleoside Phosphates Containing
Inosine, C. Formoso and I. Tinoco, Jr., Biopolymers 10, 531 (1971).
70. Estimation of Secondary Structure in Ribonucleic Acids, I. Tinoco, Jr., O. C.
Uhlenbeck, and M. D. Levine, Nature 230, 362-367 (1971).
71. Minor Nucleosides in RNA: Optical Studies of Dinucleoside Phosphates Containing
Dihydrouridine, C. Formoso and I. Tinoco, Jr., Biopolymers 10, 1533-1541 (1971).
72. Calculation of the Rotational Strengths of Mononucleosides, N. N. H. Teng, M. S.
Itzkowitz and I. Tinoco, Jr., J. Am. Chem. Soc. 93, 6257-6264 (1971).
73. Circular Dichroism of Polynucleotides: Dimers as a Function of Conformation, W. C.
Johnson, Jr., M. S. Itzkowitz and I. Tinoco, Jr., Biopolymers 11, 225-234 (1972).
74. The Ultraviolet Circular Dichroism of Some Natural DNAs and an Analysis of the Spectra for Sequence Information, F. S. Allen, D. M. Gray, G. P. Roberts and I. Tinoco, Jr.,
Biopolymers 11, 853-879 (1972).
75. Circular Dichroism of Polypeptide Solutions in the Vacuum Ultraviolet, W. C.
Johnson, Jr. and I. Tinoco, Jr., J. Am. Chem. Soc. 94, 4389-4390 (1972).
76. Circular Dichroism Study of Nine Species of Transfer Ribonucleic Acid, A. D. Blum,
O. C. Uhlenbeck and I. Tinoco, Jr., Biochemistry 11, 3248-3256 (1972).
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77. The Circular Dichroism of Synthetic Ribonucleic Acids and the Influence of Uracil on
Conformation, D. M. Gray and I. Tinoco, Jr. and M. J. Chamberlin, Biopolymers 11, 1235-1258 (1972).
78. Stability of RNA Hairpin Loops: A6-Cm-U6, O. C. Uhlenbeck, P. N. Borer, B.
Dengler and I. Tinoco, Jr., J. Mol. Biol. 73, 483-496 (1973).
79. Electronic Spectra of Nucleic Acid Bases. I. Interpretation of the In-Plane Spectra with the Aid of All Valence Electron MO-CI Calculations, W. Hug and I. Tinoco, Jr., J. Am. Chem.
Soc. 95, 2803-2813 (1973).
80. Circular Dichroism of Double-helical Oligoribonucleotides, P. N. Borer, O. C.
Uhlenbeck, B. Dengler and I. Tinoco, Jr., J. Mol. Biol. 80 759-771 (1973).
81. Improved Estimation of Secondary Structure in Ribonucleic Acids, I. Tinoco, Jr., P. N. Borer, B. Dengler, M. D. Levine, O. C. Uhlenbeck, D. M. Crothers and J. Gralla, Nature New
Biology 246, 40-41 (1973).
82. Calculation of Circular Dichroism and Optical Rotatory Dispersion of Polymers, I. Tinoco, Jr., Fundamental Aspects and Recent Developments in Optical Rotatory Dispersion and
Circular Dichroism, R. Ciardelli and P. Salvadori, Eds. Heyden and Sons, Ltd. London (1973).
83. Book Review: Biological Transmutations. J. Nutrition Education 6, (1974).
84. Book: The Physical Chemistry of Nucleic Acids, V. A. Bloomfield, D. M. Crothers and I. Tinoco, Jr., Harper and Row, New York (1974).
85. The Electronic Spectra of Nucleic Acid Bases. II. Out-of-Plane Transitions and the
Structure of the Nonbonding Orbitals, W. Hug and I. Tinoco, Jr., J. Am. Chem. Soc. 96, 665 (1974).
86. Investigation of Chiroptical Properties of Helical Copolymers with Aromatic Side
Chains, W. Hug, F. Ciardelli and I. Tinoco, Jr., J. Am. Chem. Soc. 96, 3407-3410 (1974).
87. Fluorescence Detected Circular Dichroism, D. H. Turner, I. Tinoco, Jr. and M. F.
Maestre, J. Am. Chem. Soc. 96 4340-4342 (1974).
88. Stability of Ribonucleic Acid Double-Stranded Helices, P. N. Borer, B. Dengler, I.
Tinoco, Jr. and O. C. Uhlenbeck, J. Mol. Biol. 86, 843-853 (1974).
89. The Stability of RNA Hairpin Loops Containing A-U-G: An-U-G-Um, E. Wickstrom
and I. Tinoco, Jr., Biopolymers 13, 2367-2383 (1974).
90. Two-Photon Circular Dichroism, I. Tinoco, Jr., J. Chem. Phys. 62, 1006-1009 (1975).
91. The Binding of Complementary Oligoribonucleotides to Yeast Initiator Transfer RNA,
S. M. Freier and I. Tinoco, Jr., Biochemistry 14, 3310-3314 (1975).
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92. Fluorescence Detected Circular Dichroism Study of the Anticodon Loop of Yeast
tRNAPhe, D. H. Turner, I. Tinoco, Jr. and M. F. Maestre, Biochemistry 14, 3794-3799 (1975).
93. The Kinetics of Codon-Anticodon Interaction in Yeast Phenylalanine Transfer RNA,
K. Yoon, D. H. Turner and I. Tinoco, Jr., J. Mol. Biol. 99, 507-518 (1975).
94. Circular Dichroism Calculations for Polyinosinic Acid in Proposed Multi-Stranded
Geometries, C. L. Cech and I. Tinoco, Jr., Nucleic Acids Res. 3, 399-404 (1976).
95. Polynucleotide Circular Dichroism Calculations: Use of an All-Order Classical Coupled Oscillator Polarizability Theory, C. L. Cech, W. Hug, and I. Tinoco, Jr., Biopolymers
15, 131-152 (1976).
96. Calorimetric and Spectroscopic Investigation of the Helix-to-Coil Transitions of a Ribo-Oligonucleotide: rA7U7, K. J. Breslauer, J. M. Sturtevant and I. Tinoco, Jr., J. Mol. Biol.
99, 549-565 (1975).
97. The Kinetics of Binding of U-U-C-A to a Dodecanucleotide Anticodon Fragment from
Yeast tRNAPhe, K. Yoon, D. H. Turner, I. Tinoco, Jr., F. von der Haar and F. Cramer, Nucleic
Acids Res. 3, 2233-2241 (1976).
98. Fluorescence Detected Circular Dichroism. Theory, I. Tinoco, Jr. and D. H. Turner, J.
Am. Chem. Soc. 98, 6453-6456 (1976).
99. Circular Dichroism and Optical Rotation in an Electric Field, I. Tinoco, Jr., Chapter 10 of "Molecular Electro-optics," C. T. O'Konski, Ed., Marcel Dekker, Inc., New York (1976).
100. Fluorescence Detected Circular Dichroism and Circular Polarization of Luminescence in Rigid Media: Direction Dependent Optical Acitivity Obtained by Photoselection, I. Tinoco,
Jr., B. Ehrenberg and I. Z. Steinberg, J. Chem. Phys. 66, 916-920 (1977).
101. Circular Dichroism Calculations for Double-Stranded Polynucleotides of Repeating
Sequence, C. L. Cech and I. Tinoco, Jr., Biopolymers 16, 43-65 (1977).
102. Classical Theory of Circular Dichroism in Infinite Helical Polymers, A. I. Levin and
I. Tinoco, Jr., J. Chem. Phys. 66, 3491-3497 (1977).
103. Studies of the Conformation of Modified Dinucleoside Phosphates Containing 1,N6--
Ethanoadenosine and 2'-O-Methylcytidine by 360-MHz 1H Nuclear Magnetic Resonance Spectroscopy. Investigation of the Solution Conformations of Dinucleoside Phosphates, C.-H.
Lee and I. Tinoco, Jr., Biochemistry 16, 5403-5414 (1977).
104. Sequences and Efficiencies of Proposed mRNA Terminators, J. E. McMahon and I.
Tinoco, Jr., Nature 271, 275-277 (1978).
105. Interactions of 4-Nitroquinoline 1-Oxide with Four Deoxyribonucleotides, S. A.
Winkle and I. Tinoco, Jr., Biochemistry 17, 1352-1356 (1978).
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106. Role of Hypermodified Bases in Transfer RNA. Solution Properties of Dinucleoside
Monophosphates, M. T. Watts and I. Tinoco, Jr., Biochemistry 17, 2455-2463 (1978).
107. Book: Physical Chemistry: Principles and Applications in Biological Sciences, I. Tinoco, Jr., K. Sauer and J. C. Wang, Prentice-Hall, Englewood Cliffs, N. J. (1978). Spanish Translation, 1980. Second Edition, 1985.
108. Mutagen-oligonucleotide Complexes with a Bulged Base as Models for Frameshift
Mutation, C.-H. Lee and I. Tinoco, Jr., Nature 274, 609-610 (1978).
109. Circular Dichroism and Fluorescence Detected Circular Dichroism of Macromolecules, I. Tinoco, Jr., Optical Activity and Chiral Discrimination, S. F. Mason, Ed., D. Reidel Publishing Co. pp. 57-85 (1979).
110. Circular Dichroism of Large Molecules, I. Tinoco, Jr., Intern. J. Quantum Chem.16, 111-17 (1979).
111. Interactions of 4-Nitroquinoline 1-Oxide with Deoxyribodinucleotides, S. A. Winkle
and I. Tinoco, Jr., Biochemistry 18, 3833-3839 (1979).
112. Circular Dichroism of Polymers: Theory and Practice, I. Tinoco, Jr. Optically Active
Polymers, E. Selegny, Ed., D. Reidel Publishing Co., pp. 1-13 (1979).
113. Conformations of Dinucleoside Phosphates in Aqueous Solution, C.-H. Lee, E.
Charney and I. Tinoco, Jr., Biochemistry 18, 5636-71 (1979).
114. Fluorescence Detected Circular Dichroism of Dinucleoside Phosphates, A Study of
Solution Conformations and the Two-State Model, C. Reich and I. Tinoco, Jr., Biopolymers 19, 833-48 (1980).
115. The Circular Dichroism of Large Helices, A Free Particle on a Helix, D. Moore and I.
Tinoco, Jr., J. Chem. Phys. 82, 3396-3400 (1980).
116. Conformation Studies of 13 Trinucleoside Diphosphates by 360 MHz PMR Spectroscopy, A Bulged Base Conformation. I. Base Protons and H1' Protons, C.-H. Lee and I.
Tinoco, Jr., Biophys. Chem. 11, 283-294 (1980).
117. DNA-RNA Hybrid Duplexes Containing Oligo (dA:rU) Sequences are Exceptionally Unstable and May Facilitate Termination of Transcription, F. H. Martin and I. Tinoco, Jr.,
Nucleic Acids Res. 8, 2295-2299 (1980).
118. Book Review: Nucleic Acid Structure, by W. Gushlbauer; I. Tinoco, Jr., J. Am.
Chem. Soc. 102, 2516 (1980).
119. The Optical Activity of Nucleic Acids and Their Aggregates, I. Tinoco, Jr., C.
Bustamante and M. F. Maestre, Ann. Rev. Biophys. Bioeng. 9, 107-141 (1980).
120. Circular Intensity Differential Scattering of Light by Helical Structures. I. Theory, C.
Bustamante, M. F. Maestre and I. Tinoco, Jr., J. Chem. Phys. 73, 4273-4281 (1980).
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121. Circular Intensity Differential Scattering of Light by Helical Structures. II.
Applications. C. Bustamante, M. F. Maestre and I. Tinoco, Jr., J. Chem. Phys. 73, 6046-6055 (1980).
122. Book Review: Biophysical Chemistry, Parts I-III, by C. R. Cantor and P. R.
Schimmel. I. Tinoco, Jr., Cell 22, 320-321 (1980).
123. Correlations Between DNA Structural Parameters and Calculated Circular Dichroism Spectra. B. B. Johnson, K. S. Dahl, I. Tinoco, Jr., V. I. Ivanov and V. B. Zhurkin, Biochemistry
20, 73-78 (1981).
124. Mismatched Bases in Nucleic Acids: Their Effects on Structure and Stability. I. Tinoco, Jr., F. H. Martin, J. W. Nelson and A. Pardi, Macromolecular Chemistry and Physics
1981, 143-154 (1981).
125. A Comparative Study of Ribonucleotide, Deoxyribonucleotide and Hybrid Oligonucleotide Helices by Nuclear Magnetic Resonance. A. Pardi, F. H. Martin and I. Tinoco,
Jr., Biochemistry 20, 3986-3995 (1981).
126. Circular Intensity Differential Scattering of Light by Helical Structures. III. A General Polarizability and Anomalous Scattering. C. Bustamante, M. F. Maestre and I. Tinoco,
Jr., J. Chem. Phys. 74, 4839-4850 (1981).
127. DNA and RNA Oligomer Thermodynamics: The Effect of Mismatched Bases on
Double Helix Stability. J. W. Nelson, F. H. Martin and I. Tinoco, Jr., Biochemistry 20, 2509-2531 (1981).
128. Sequential Folding of a Messenger RNA Molecule. R. Nussinov and I. Tinoco, Jr., J.
Mol. Biol. 151, 519-533 (1981).
129. Crystallization and Preliminary Crystallographic Investigation of a DNA-RNA Hybrid. S. R. Holbrook, F. H. Martin, I. Tinoco, Jr., T. S.-Young and S.-H. Kim, J. Mol. Biol.
153, 837-840 (1981).
130. Chiroptical Methods and Their Applications to Biomolecular Systems. I. Tinoco, Jr., C. Bustamante and M. F. Maestre, Structural Molecular Biology: Methods and Applications, D. B. Davies, W. Saenger and S. S. Danyluk, Eds., Plenum Press, pp. 269-303 (1982).
131. Circular Intensity Differential Scattering of Light. IV. Randomly Oriented Species.
C. Bustamante, I. Tinoco, Jr. and M. F. Maestre. J. Chem. Phys. 76, 3440-3446 (1982).
132. Small Changes in Free Energy Assignments for Unpaired Bases Do Not Affect Predicted Secondary Structures in Single Stranded RNA. R. Nussinov, I. Tinoco, Jr. and A.
Jacobson, Nucleic Acids Res. 10, 341-350 (1982).
133. Secondary Structure Model for the Complete Simian Virus 40 Late Precursor mRNA,
R. Nussinov, I. Tinoco, Jr. and A. Jacobson, Nucleic Acids Res. 10, 351-364 (1982).
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134. Structural Effects on the Circular Dichroism of Ethidium Ion-Nucleic Acid
Complexes, K. S. Dahl, A. Pardi and I. Tinoco, Jr., Biochemistry 21, 2730-2736 (1982).
135. Differential Scattering of Circularly Polarized Light by the Helical Sperm Head from the Octopus Eledone cirrhosa, M. F. Maestre, C. Bustamante, T. L. Hayes, J. A. Subirana and I.
Tinoco, Jr., Nature 298, 773-774 (1982).
136. Kinetics for Exchange of Imino Protons in Deoxyribonucleic Acid, Ribonucleic Acid
and Hybrid Oligonucleotide Helices, A. Pardi and I. Tinoco, Jr., Biochemistry 21, 4686-4693 (1982).
137. Comparison of the Kinetics of Ribooligonucleotide, Deoxyribooligonucleotide and Hybrid Oligonucleotide Double-Strand Formation by Temperature-Jump Kinetics, J. W. Nelson
and I. Tinoco, Jr., Biochemistry 21, 5289-5295 (1982).
138. Kinetics for Exchange of the Imino Protons in the d(C-G-C-G-A-A- T-T-C-G-C-G) Double Helix and in Two Similar Helices that Contain a G:T Base Pair d(C-G-T-G-A-A-T-T-C-G-C-G) and an Extra Adenine d(C-G-C-A-G-A-A-T-T-C-G-C-G), A. Pardi, K. M. Morden, D. J.
Patel and I. Tinoco, Jr., Biochemistry 21, 6567-6574 (1982).
139. Circular Dichroism in Samples Which Scatter Light, I. Tinoco, Jr., M. F. Maestre and
C. Bustamante, Trends in Biochemical Sciences 8, 41-44 (1983).
140. Kinetics for Exchange of the Imino Protons of the d(C-G-C-G-A-A- T-T-C-G-C-G) Double Helix in Complexes with the Antibiotics Netropsin, K. M. Morden, D. J. Patel and I.
Tinoco, Jr., Biochemistry 22, 1107-1113 (1983).
141. Temperature-Jump Kinetics of the dC-G-T-G-A-A-T-T-C-G-C-G Double Helix Containing a G:T Base Pair and the dC-G-C-A-G-A-A-T-T-C-G-C-G Double Helix Containing
an Extra Adenine, Y. G. Chu and I. Tinoco, Jr., Biopolymers 22, 1235-1246 (1983).
142. Circular Differential Scattering Can Be an Important Part of the Circular Dichroism of Macromolecules, C. Bustamante, I. Tinoco, Jr. and M. F. Maestre, Proc. Nat'l. Acad. Sci.
USA 80, 3568-3572 (1983).
143. Scattering of Circularly Polarized Radiation, I. Tinoco, Jr. and D. Keller, J. Phys.
Chem. 87, 2915-2917 (1983).
144. Secondary Structure of the Tetrahymena Ribosomal RNA Intervening Sequence: Structural Homology with Fungal Mitochondrial Intervening Sequences, T. R. Cech, N. K.
Tanner, I. Tinoco, Jr., B. R. Weir, M. Zuker and P. S. Perlman, Proc. Nat'l. Acad. Sci. USA 80, 3903-3907 (1983).
145. Unpaired Cytosine in the Deoxyoligonucleotide Duplex dCA3CA3G.dCT6G is
Outside of the Helix, K. M. Morden, Y. G. Chu, F. H. Martin and I. Tinoco, Jr., Biochemistry
22, 5557-5563 (1983).
11
146. Intercalation of Ethidium Ion into DNA and RNA Oligonucleotides, J. W. Nelson
and I. Tinoco, Jr., Biopolymers 23, 213-233 (1984).
147. Chemically Induced Dynamic Nuclear Polarization Studies of Guanosine in Nucleotides, Dinucleotides and Oligonucleotides, E. F. McCord, K. M. Morden, A. Pardi, I.
Tinoco, Jr. and S. G. Boxer, Biochemistry 23, 1926-1934 (1984).
148. Chemically Induced Dynamic Nuclear Polarization Studies of Yeast t-RNAPhe, E. F.
McCord, K. M. Morden, I. Tinoco, Jr. and S. G. Boxer, Biochemistry 23, 1935-1939 (1984).
149. Differential Scattering (CIDS) of Circularly Polarized Light by Dense Particles, C.
Bustamante, M. F. Maestre, D. Keller and I. Tinoco, Jr., J. Chem. Phys. 80, 4817-4823 (1984).
150. Differential Absorption and Differential Scattering of Circularly Polarized Light: Applications to Biological Macromolecules, I. Tinoco, Jr. and A. Williams, Ann. Rev. Phys.
Chem. 35, 329-355 (1984).
151. Quantum Mechanical Treatment of Circular Intensity Differential Scattering: The
Elastic Process, D. Keller, C. Bustamante and I. Tinoco, Jr., J. Chem. Phys. 81, 1643-1649 (1984).
152. 'Z-RNA'--a Left-Handed RNA Double Helix, K. Hall, P. Cruz, I. Tinoco, Jr., T. M.
Jovin and J. H. van de Sande, Nature 311, 584-586 (1984).
153. Use of Circularly Polarized Light to Study Biological Macromolecules, I. Tinoco, Jr.,
M. F. Maestre, C. Bustamante and D. Keller, Pure and Applied Chemistry 56, 1423-1428 (1984).
154. The Circular Intensity Differential Scattering (CIDS) of Cholesteric and Blue Mesophases, C. Bustamante, K. S. Wells, D. Keller, B. Samori, M. F. Maestre and I. Tinoco, Jr.,
Mol. Cryst. Liq. Cryst. 111, 79-102 (1984).
155. Model Computations on the Differential Scattering of Circularly Polarized Light (CIDS) by Dense Macromolecular Particles, D. Keller, C. Bustamante, M. F. Maestre and I.
Tinoco, Jr., Biopolymers 24, 783-797 (1985).
156. Imaging of Optically Active Biological Structures Using Circularly Polarized Light,
D. Keller, C. Bustamante, M. F. Maestre and I. Tinoco, Jr., Proc. Nat'l. Acad. Sci. USA 82, 401-405 (1985).
157. End-to-End Transcription of an Alu Family Repeat: A New Type of Polymerase III-Dependent Terminator and Evolutionary Implication. J. Hess, C.Perez-Stable, G. J. Wu, B.
Weir, I. Tinoco, Jr. and C.-K. J. Shen, J. Mol. Biol. 184, 7-21 (1985).
158. Visualization of Oriented Hemoglobin S in Erythrocytes by Differential Extinction of Polarized Light. W. Mickols, M. F. Maestre, I. Tinoco, Jr. and S. H. Embury, Proc. Nat'l. Acad.
Sci. USA 82, 6527-6531 (1985).
12
159. Base-Base Mismatches. Thermodynamics of Double Helix Formation for dCA3XA3G+ dCT3YT3G (X, Y = A,C,G,T). F. Aboul-ela, D. Koh, I. Tinoco, Jr. and F. H.
Martin, Nucleic Acids Res. 13, 4811-4824 (1985).
160. Evidence for Z-Form RNA by Vacuum UV Circular Dichroism, J. H. Riazance, W.
A. Baase, W. C. Johnson, Jr., K. Hall, P. Cruz and I. Tinoco, Jr., Nucleic Acids Res. 13, 4983-4989 (1985).
161. Ethidium Ion Binds More Strongly to a DNA Double Helix with a Bulged Cytosine
than to a Regular Double Helix. J. W. Nelson and I. Tinoco, Jr., Biochemistry 24, 6416-6421 (1985).
162. Differential Polarization Microscopy: A New Imaging Technique. W. Mickols, C.
Bustamante, M. F. Maestre, I. Tinoco, Jr., S. H. Embury, Biotechnology 3, 711-714 (1985).
163. Circular Intensity Differential Scattering of Planar and Focal Conic Orientations of Cholesteric Liquid Crystals, K. Hall, K. S. Wells, D. Keller, B. Samori, M. F. Maestre, I. Tinoco, Jr. and C. Bustamante, Applications of Circularly Polarized Radiation Using
Synchrotron and Ordinary Sources, Eds: F. S. Allen and C. Bustamante, Plenum Press, pp. 77-91 (1985).
164. Circular Differential Imaging of Chiral Objects, M. F. Maestre, D. Keller, C. Bustamante and I. Tinoco, Jr. Applications of Circularly Polarized Radiation Using Synchrotron
and Ordinary Sources, Eds: F. S. Allen and C. Bustamante, Plenum Press, pp. 133-146 (1985).
165. Base Pairing Involving Deoxyinosine: Implications for Probe Design, F. H. Martin,
M. M. Castro, F. Aboul-ela and I. Tinoco, Jr., Nucleic Acids Res. 13, 8927-8938 (1985).
166. An Imaging Differential Polarization Microscope with Electronic Readout. W.
Mickols, I. Tinoco, Jr., J. E. Katz, M. F. Maestre and C. Bustamante, Rev. Sci. Instr. 56, 2228-2236 (1985).
167. A Dynamic Programming Algorithm for Finding Alternate RNA Secondary
Structures. A. L. Williams, Jr. and I. Tinoco, Jr., Nucleic Acids Res. 14, 299-315 (1986).
168. The Left-Handed Z-form of Double-Stranded RNA. P. Cruz, K. Hall, J. Puglisi, P. Davis, C. C. Hardin, M. O. Trulson, R. A. Mathies, I. Tinoco, Jr., W. C. Johnson, Jr. and T.
Neilson, Biomolecular Stereodynamics IV, Adenine Press, New York, pp. 179-200, 1986.
169. Z-RNA: A Left-Handed Double Helix. I. Tinoco, Jr., P. Cruz, P. Davis, K. Hall, C. C. Hardin, R. A. Mathies, J. D. Puglisi, M. O. Trulson, W. C. Johnson and T. Neilson, Structure
and Dynamics of RNA, Plenum Press, New York, pp. 55-68, 1986.
170. The Tetraribonucleotide rCpGpCpG Forms a Left-Handed Z-RNA Double Helix, P.
W. Davis, K. Hall, P. Cruz, I. Tinoco, Jr. and T. Neilson, Nucleic Acids Res. 14, 1279-1291 (1986).
13
171. This Week's Citation Classic, I. Tinoco, Jr., Current Contents Life Sciences 29, 17
(1986) and Current Contents Engineering, Technology and Applied Sciences 17, 16 (1986).
172. Vacuum Ultraviolet Circular Dichroism as an Indicator of Helical Handedness in Nucleic Acids, A. L. Williams, Jr., C. Cheong, I. Tinoco, Jr. and L. B. Clark, Nucleic Acids Res.
14, 6649-6659 (1986).
173. Circular Differential Scattering and Circular Differential Absorption of DNA-Protein Condensates and of Dyes Bound to DNA-Protein Condensates, C. L. Phillips, W. Mickols, M. F.
Maestre and I. Tinoco, Jr., Biochemistry 25, 7803-7811 (1986).
174. Absorption, Scattering and Imaging of Biomolecular Structures with Polarized Light, I. Tinoco, Jr., W. Mickols, M. Maestre and C. Bustamante, Ann. Rev. Biophysics Biophys. Chem.
16, 319-349 (1987).
175. Structure, Dynamics and Thermodynamics of Mismatched DNA Oligonucleotide Duplexes d(CCCAGGG)2 and d(CCCTGGG)2, F. H. Arnold, S. Wolk, P. Cruz and I. Tinoco, Jr.,
Biochemistry 26, 4068-4075 (1987).
176. Differential Polarization Microscopy of Changes in Structure in Spermatocyte Nuclei,
W. Mickols, M. F. Maestre and I. Tinoco, Jr., Nature 328, 452-454 (1987).
177. Structure and Function in Nucleic Acids: Mutagenesis, I. Tinoco, Jr., S. Wolk, F. Arnold and F. Aboul-ela, Structure and Dynamics of Biopolymers, C. Nicolini, Ed., Martinus Nijhoff, pp. 92-111 (1987).
178. Stabilization of Z-RNA by Chemical Bromination and its Recognition by Anti-Z-DNA Antibodies, C. C. Hardin, D. A. Zarling, J. D. Puglisi, M. O. Trulson, P. D. Davis and I.
Tinoco, Jr., Biochemistry 26, 5191-5199 (1987).
179. Raman Spectroscopic Study of Left-Handed Z-RNA, M. O. Trulson, J. D. Puglisi, P.
Cruz, I. Tinoco, Jr. and R. A. Mathies, Biochemistry 26, 8624-8630 (1987)
180. RNA Structure from A to Z, I. Tinoco, Jr., P. Davis, C. C. Hardin, J. D. Puglisi, G. T.
Walker and J. Wyatt, Cold Spring Harbor Symp. Quant. Biol. 52, 135-146 (1987).
181. Telomeric DNA Sequences Form Novel Intramolecular Structures Containing Guanine•Guanine Base-Pairs. E. Henderson, C. C. Hardin, S. K. Wolk, I. Tinoco, Jr. and E. H.
Blackburn, Cell 51, 899-908 (1987).
182. The Effect of Speed of Deoxygenation on the Percentage of Aligned Hemoglobin in Sickle Cells. Application of Differential Polarization Microscopy, W. E. Mickols, J. D. Corbett,
M. F. Maestre, I. Tinoco, Jr., J. Kropp and S. H. Embury, J. Biol. Chem. 263, 4338-4346 (1988).
183. A Pseudoknotted RNA Oligonucleotide, J. D. Puglisi, J. R. Wyatt and I. Tinoco, Jr.,
Nature 321, 283-286 (1988).
14
184. Binding of Ethidium Ion to Left-handed Z-RNA Induces a Cooperative Transition to Right-Handed RNA at the Intercalation Site, C. C. Hardin, G. T. Walker and I. Tinoco, Jr.,
Biochemistry 27, 4178-4184 (1988).
185. Characterization of Anti-Z-RNA Polyclonal Antibodies: Epitope Properties and Recognition of Z-DNA, C. C. Hardin, D. A. Zarling, S. K. Wolk, W. S. Ross and I. Tinoco, Jr.,
Biochemistry 27, 4169-4177 (1988).
186. CUUCGG Hairpins: Extraordinarily Stable RNA Secondary Structure Associated with Various Biochemical Processes, C. Tuerk, P. Gauss, C. Thermes, D. R. Groebe, N. Guild, G. Stormo, M. Gayle, Y. d'Auberton-Carafa, O. C. Uhlenbeck, I. T inoco, Jr., E. N. Brody and L.
Gold, Proc. Nat'l. Acad. Sci. USA 85, 1364-1368 (1988).
187. The TFIIIA Recognition Fragment d(GGATGGGAG):d(CTCCCATCC) is B-form in
Solution, F. Aboul-ela, G. Varani, G. T. Walker and I. Tinoco, Jr., Nucleic Acids Res. 16, 3559-3572 (1988).
188. Comparison of the B- and Z-form Hairpin Loop Structures Formed by d(CG)5T4(CG)5, S.Wolk, C. C. Hardin, M. W. Germann, J. H. van de Sande & I. Tinoco, Jr.,
Biochemistry 27 6960-6967 (1988).
189. Thermodynamics of Base Pairing Involving 2,6-Diaminopurine, C. Cheong, I.
Tinoco, Jr. & A. Chollet, Nucleic Acids Res. 16 5115-5122 (1988).
190. Comparison Between DNA Melting Thermodynamics and DNA Polymerase Fidelity, J. Petruska, M. F. Goodman, M. S. Boosalis, L. C. Sowers, C. Cheong and I. Tinoco, Jr., Proc.
Nat'l. Acad. Sci. USA 85, 6252-6256 (1988).
191. Self-assembly of Porphyrins on Nucleic Acid Templates, Esther J. Gibbs, I. Tinoco,
Jr., M. F. Maestre, P. A. Ellinas and R. F. Pasternack, Biochem. Biophys. Res. Comm. 157, 350-358 (1988).
192. Pseudoknotted RNA Oligonucleotides, J. R. Wyatt, J. D. Puglisi and I. Tinoco, Jr., in Molecular Biology of RNA, T. Cech, Ed., UCLA Symposia on Molecular and Cellular Biology, Vol. 94, Alan R. Liss, Inc. New York, pp. 25-32 (1989).
193. Conformational Analysis of dC3G3: A B-family Duplex in Solution, S. Wolk, W. N.
Thurmes, W. S. Ross, C. C. Hardin and I. Tinoco, Jr., Biochemistry 28, 2452-2459 (1989).
194. Conformation and Dynamics of an RNA Internal Loop, G. Varani, B. Wimberly & I.
Tinoco, Jr., Biochemistry 28, 7760-7772 (1989).
195. Nucleic Acid Structure from A to Z, I. Tinoco, Jr., F. Aboul-ela, C. C. Hardin, J. D. Puglisi, G. Varani, G. T. Walker, S. K. Wolk & J. R. Wyatt, in Frontiers of Macromolecular
Science, T. Saegusa, T. Higashimura and A. Abe, Eds., Blackwell Scientific Publications, Oxford, pp. 519-524 (1989).
15
196. Effects of Nucleotide Bromination on the Stabilities of Z-RNA and Z-DNA. A Molecular Mechanics and Thermodynamic Perturbation Study, W. S. Ross, C. C. Hardin, I.
Tinoco, Jr.. S. N. Rao, D. A. Pearlman and P. A. Kollman, Biopolymers 28, 1939-1957 (1989).
197. RNA Folding: Pseudoknots, Loops and Bulges, J. R. Wyatt, J. D. Puglisi & I. Tinoco,
Jr., Bioessays 11, 100-106 (1989).
198. Absorbance Melting Curves of RNA, J. D. Puglisi & I. Tinoco, Jr., in RNA
Processing, J. E. Dahlberg & J. N. Abelson, Eds., Methods in Enzymology, Vol. 180, Academic Press, New York, pp. 304-325 (1989).
199. Z-RNA: The Solution NMR structure of r(CGCGCG), P. W. Davis, R. W. Adamiak
& I. Tinoco, Jr., Biopolymers 29, 109-122 (1990).
200. RNA Folding, I. Tinoco, Jr., J. D. Puglisi & J. R. Wyatt, in Nucleic Acids and
Molecular Biology, F. Eckstein & D. M. J. Lilley, Eds.,Springer-Verlag, New York, pp. 205-226 (1990).
201. Solution Conformation of an RNA Hairpin Loop, J. D. Puglisi, J. R. Wyatt & I.
Tinoco, Jr., Biochemistry 29, 4215-4226 (1990).
202. Conformation of an RNA Pseudoknot, J. D. Puglisi, J. R. Wyatt & I. Tinoco, Jr., J.
Mol. Biol. 214, 437-453 (1990).
203. RNA Pseudoknots: Stability and Loop Size Requirements, J. R. Wyatt, J. D. Puglisi
& I. Tinoco, Jr., J. Mol. Biol. 214, 455-470 (1990).
204. Solution Structure of an Unusually Stable RNA Hairpin, 5'GGAC(UUCG)GUCC, C.
Cheong, G. Varani & I. Tinoco, Jr., Nature 346, 680-682 (1990).
205. DNA Dynamics in Aqueous Solution: Opening the Double Helix, A. Pohorille, W. S.
Ross & I. Tinoco, Jr., Int'l. J. Supercomputer Applications 4, 81-96 (1990).
206. Structural Elements in RNA, M. Chastain & I. Tinoco, Jr., Prog. Nucleic Acid Res.
Mol. Biol. 41, 131-177 W. E. Cohn & K. Moldave, Eds., Academic Press, Orlando, Fl. (1991).
207. RNA Pseudoknots, J. D. Puglisi, J. R. Wyatt & I. Tinoco, Jr., Accounts Chem. Res.
24, 152-158 (1991).
208. Structure of an Unusually Stable RNA Hairpin, G. Varani, C. Cheong & I. Tinoco,
Jr., Biochemistry 30, 3280-3289 (1991).
209. A Proton NMR Study of a DNA Dumbbell Structure with Hairpin Loops of Only Two Nucleotides: d(CACGTGTGTGCGTGCA), L. J. Rinkel & I. Tinoco, Jr., Nucleic Acids Res.
19, 3695-3700 (1991).
210. Structural Determinants of RNA Function, B. Wimberly, G. Varani & I. Tinoco, Jr.,
Current Opinion in Structural Biology 1, 405-409 (1991).
16
211. Carbon Assignments and Heteronuclear Coupling Constants for an RNA
Oligonucleotide from Natural Abundance 13C-1H Correlated Experiments, G. Varani & I.
Tinoco, Jr., J. Am. Chem. Soc. 113, 9349-9354 (1991).
212. Crystal Structure of an RNA Double Helix Incorporating a Track of Non-Watson-
Crick Base Pairs, S. Holbrook, C. Cheong, I. Tinoco, Jr. & S.-H. Kim, Nature, 353, 579-581 (1991).
213. RNA Structure and NMR Spectroscopy, G. Varani & I. Tinoco, Jr., Quarterly Revs.
Biophys. 24, 479-532 (1991).
214. A Thermodynamic Study of Unusually Stable RNA and DNA Hairpins, V. P. Antao,
S. Y. Lai & I. Tinoco, Jr., Nucleic Acids Res. 19, 5901-5905 (1991).
215. Poly(rA) Binds Poly(rG)•Poly(rC) to Form a Triple Helix, M. Chastain & I. Tinoco,
Jr., Nucleic Acids Res. 20, 315-318 (1992).
216. Thermodynamic Parameters for Loop Formation in RNA and DNA Hairpin
Tetraloops, V. P. Antao & I. Tinoco, Jr., Nucleic Acids Res. 20, 819-824 (1992).
217. A Base-Triple Structural Domain in RNA, M. Chastain and I. Tinoco, Jr.,
Biochemistry 31, 12733-12741 (1992).
218. Laser-Enhanced NMR Spectroscopy: Theoretical Considerations, R. A. Harris and I.
Tinoco, Jr. Science 259, 835-836 (1993).
219. The Conformation of Loop E of Eukaryotic 5S Ribosomal RNA, B. Wimberly, G.
Varani and I. Tinoco, Jr., Biochemistry 32, 1078-1087 (1993).
220. Structure of a Small RNA Hairpin, P. W. Davis, W. Thurmes and I. Tinoco, Jr.,
Nucleic Acids Res. 21, 537-545 (1993).
221. RNA Structural Elements and RNA Function, J. R. Wyatt and I. Tinoco, Jr., in The
RNA World, R. Gesteland and J. Atkins, Editors, Cold Spring Harbor Press, (1993).
222. Determination of RNA Structure and Thermodynamics, J. Jaeger, J. SantaLucia, Jr.
and I. Tinoco, Jr. Ann. Rev. Biochem. 62, 255-287 (1993).
223. RNA Structure as Related to Antisense Drugs, M. Chastain and I. Tinoco, Jr., in Antisense Research and Applications, S. T. Crooke, Editor, CRC Press, pp. 55-66 (1993).
224. The Solution Structure of a d[C(TTCG)G] DNA Hairpin and Comparison to the
Unusually Stable RNA Hairpin, J. K. James and I. Tinoco, Jr., Nucleic Acids Res. 21, 3287-3293 (1993).
225. An NMR Study of the HIV-1 TAR Element Hairpin, J. A. Jaeger and I. Tinoco, Jr.,
Biochemistry, 32, 12522-12530 (1993)
17
226. Stereospecific Assignment of H5' and H5" in RNA Using Two-Bond Carbon-Proton
Scalar Couplings, J. V. Hines, G. Varani, S. M. Landry and I. Tinoco, Jr., J. Am. Chem. Soc. 115, 11002-11003 (1993).
227. Nucleoside Triples from the Group I Intron, M. Chastain and I. Tinoco, Jr.,
Biochemistry 32, 14220-14228 (1993).
228. Nucleic Acids, P. Hagerman and I. Tinoco, Jr., Current Opinion Structural Biology 3, 311-312 (1993).
229. A "kissing" hairpin complex derived from the HIV genome, K.-Y. Chang and I.
Tinoco, Jr., Proc. Nat'l. Acad. Sci. USA 91, 8705-8709 (1994).
230. Carbon-Proton Scalar Couplings in RNA: 3D Heteronuclear and 2D Isotope-edited
NMR of a 13C-Labeled Extra-Stable Hairpin J. V. Hines, S. M. Landry, G. Varani and I. Tinoco,
Jr., J. Am. Chem. Soc. 116, 5823-5831 (1994).
231. Laser-Perturbed NMR Spectroscopy and the Conservation of Parity, R. A. Harris and
I. Tinoco, Jr. J. Chem. Phys. 101, 9289-9294 (1994).
232. Nucleic Acids, P. Hagerman and I.Tinoco, Jr., Current Opinion Structural Biology 4, 319-321 (1994).
233. Optical Spectroscopy: General Principles and Overview, I. Tinoco, Jr.. in Biochemical Spectroscopy, K. Sauer, Editor, pp. 13-19, Academic Press, New York (1995).
234. RNA Structure and Scalar Coupling Constants, I. Tinoco, Jr., Z. Cai, J. V. Hines, S. Landry, J. SantaLucia, Jr., L. X. Shen, and G. Varani, Stable Isotope Applications in
Biomolecular Structure and Mechanisms, J. Trewhella, T. A. Cross, C. J. Unkefer, Editors, Los Alamos, NM (1995), pp. 247-261.
235. Structural and Functional Studies of Retroviral RNA Pseudoknots Involved in Ribosomal Frameshifting: Nucleotides at the Junction of the Two Stems Are Important for Efficient Ribosomal Frameshifting, X. Chen, M. Chamorro, S. Lee, L. X. Shen, J. V. Hines, I.
Tinoco, Jr. and H. E. Varmus, EMBO J. 14, 842-852 (1995).
236. The Structure of an RNA Pseudoknot that Causes Efficient Frameshifting in Mouse
Mammary Tumor Virus, L. X. Shen and I. Tinoco, Jr. J. Mol. Biol. 247, 963-978 (1995).
237. RNA Structure at High Resolution, L. X. Shen, Z. Cai and I. Tinoco, Jr.,
FASEB J. 9, 1023-1033 (1995).
238. Use of Ultra-Stable UNCG Tetraloop Hairpins to Fold RNA Structures - Thermodynamic and Spectroscopic Applications, M. Molinaro and I. Tinoco, Jr. Nucleic
Acids Res. 23, 3056-3063 (1995).
239. Book: Physical Chemistry: Principles and Applications in Biological Sciences, I. Tinoco, Jr., K. Sauer and J. C. Wang, Prentice-Hall, Englewood Cliffs, N. J. (1978). Spanish Translation, 1980. Second Edition, 1985. Third Edition, 1995.
18
240. Synthesis and NMR of RNA with Selective Isotopic Enrichment in the Base Moieties, J. SantaLucia, Jr., L. X. Shen, Z. Cai, H. Lewis and I. Tinoco, Jr., Nucleic Acids
Res. 23, 4913-4921 (1995).
241. Conformation of an RNA Molecule that Models the P4/P6 Junction from
Group I Introns, J. Nowakowski and I. Tinoco, Jr., Biochemistry 35, 2577-2585 (1996).
242 Nucleic Acid Structures, Energetics and Dynamics, I. Tinoco, Jr., J. Phys.
Chem. 100, 13311-13322 (1996).
243. Conformation of a Non-Frameshifting RNA Pseudoknot from Mouse
Mammary Tumor Virus, H. Kang, J. V. Hines and I. Tinoco, Jr., J. Mol. Biol. 259, 135-147 (1996).
244. Solution Structure of Loop A from the Hairpin Ribozyme from Tobacco
Ringspot Virus Satellite, Z. Cai and I. Tinoco, Jr., Biochemistry 35, 6026-6036 (1996).
245. A Characteristic Bent Conformation of RNA Pseudoknots Causes Minus-one Frameshifting During Translation of Retroviral RNA, X. Chen, H. Kang, L. X. Shen, M.
Chamorro, H. E. Varmus and I. Tinoco, Jr., J. Mol. Biol. 260, 479-483 (1996).
246. NMR Structure of a Bacteriophage T4 RNA Hairpin Involved in Translational
Repression, S. R. Mirmira and I. Tinoco, Jr., Biochemistry 35, 7664-7674 (1996).
247. A Quadruple Mutant T4 RNA Hairpin with the Same Structure as the Wild-
Type Translational Repressor, S. R. Mirmira and I. Tinoco, Jr., Biochemistry 35, 7675-7683 (1996).
248. Nucleic Acids: from Sequence to Structure to Function, P. Hagerman and
I.Tinoco, Jr., Current Opinion Structural Biology 6, 277-280 (1996).
249. Sequence Effects on RNA Bulge-Induced Helix Bending and a Conserved Five-Nucleotide Bulge from the Group I Introns, K. J. Luebke and I. Tinoco, Jr.,
Biochemistry 35, 11677-11784 (1996).
250. NMR Assignment of a 2'-Hydroxyl Proton from the UUCG Tetraloop through
Long-Range Correlations with 13C, S. R. Lynch, J. G. Pelton and I. Tinoco, Jr., Magnetic
Resonance in Chemistry 34, S11-S17 (1996).
251. Time Evolution of NMR Proton Chemical Shifts of an RNA Hairpin During a Molecular Dynamics Simulation, J. Nowakowski, J. L. Miller, P. A. Kollman and I.
Tinoco, Jr., J. Am. Chem. Soc. 118, 12812-12820 (1996).
252. RNA Enzymes: Putting Together a Large Ribozyme, I. Tinoco, Jr., Current
Biology 6, 1374-1376 (1996).
253. The Structure of an RNA "Kissing" Hairpin Complex of the HIV TAR
Hairpin Loop and its Complement, K.-Y. Chang and I. Tinoco, Jr., J. Mol. Biol. 269, 52-66 (1997).
19
254. A Mutant RNA Pseudoknot That Promotes Ribosomal Frameshifting In
Mouse Mammary Tumor Virus, H. Kang and I. Tinoco, Jr., Nucleic Acids Res. 25, 1943-1949 (1997).
255. Solution Conformation of a Five-Nucleotide RNA Bulge Loop from a Group I
Intron, K. J. Luebke, S. M. Landry and I. Tinoco, Jr., Biochemistry 36, 10246-10255 (1997).
256. Solution Structure of a Metal-Binding Site in the Major Groove of RNA
Complexed with Cobalt (III) Hexammine, J. S. Kieft and I. Tinoco, Jr., Structure 5, 713-721 (1997).
257. The Ion Core in RNA Folding, J. S. Kieft and I. Tinoco, Jr., Nature Structural
Biology 4, 509-511 (1997).
258. From RNA Hairpins to Kisses to Pseudoknots, I. Tinoco, Jr., Nucleic Acids
Symposium Series No. 36, 49-51 (1997).
259. RNA Structure and Stability, J. Nowakowski and I. Tinoco, Jr., Seminars in
Virology, 8, 153-165 (1997).
260. The Structure of the L3 Loop from the Hepatitis Delta Virus Ribozyme: a syn
Cytidine, S. R. Lynch and I. Tinoco, Jr., Nucleic Acids Res. 26, 980-987 (1998).
261. Nucleic Acids: Understanding Structure, P. Hagerman and I. Tinoco, Jr.,
Current Opinion Structural Biology 8, 275-277 (1998).
262. Mapping of a Protein-RNA Interface: Rom and the Tar-Tar* Kissing Hairpins,
L. Comolli, J. G. Pelton and I. Tinoco, Jr., Nucleic Acids Res. 26, 4688-4695 (1998).
263. RNA Folding Causes Secondary Structure Rearrangement, M. Wu and I.
Tinoco, Jr., Proc. Natl. Acad. Sci. USA 95, 11555-11560 (1998). Commentary, D.
Thirumalai, PNAS 95, 11506-11508.
264. RNA Structure in Solution, J. Nowakowski and I. Tinoco, Jr., in Oxford
Handbook of Nucleic Acid Structure, pp. 567-602, S. Neidle, Ed., Oxford University Press, 1999.
265. The Interactions that Shape RNA Structure, M. E. Burkard, D. H. Turner and I. Tinoco, Jr., pp. 233-264, in The RNA World, 2nd edition, R. F. Gesteland, T. Cech, J. F. Atkins, Eds. Cold Spring Harbor Press, 1999.
266. Structure and Thermodynamics of Metal Binding in the P5 helix of a Group I
Intron Ribozyme, G. Colmenarejo and I. Tinoco, Jr., J. Mol. Biol.290, 119-135 (1999).
267. Solution Structure and Thermodynamics of a Divalent Metal Ion Binding Site
in an RNA Pseudoknot, R. L. Gonzalez, Jr. and I. Tinoco, Jr., J. Mol. Biol. 289, 1267-1282 (1999).
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268. How RNA Folds, I. Tinoco, Jr. and C. Bustamante, J. Mol. Biol., 293, 271-281(1999).
269. A Novel 5' Displacement Spin-Labeling Technique for EPR Spectroscopy of
RNA, J. C. Macosko, M. S. Pio, I. Tinoco, Jr. and Y.-K. Shin, RNA 5, 1158-1166 (1999).
270. Quantifying the Energetic Interplay of RNA Tertiary and Secondary Structure
Interactions, S. K. Silverman, M. Zheng, M. Wu, I. Tinoco, Jr., and T. R. Cech, RNA 5, 1665-1674 (1999).
271. Assignment of Cytosine N3 Resonances in Nucleic Acids via Intrabase Three-bond Coupling to Amino Protons, S. Rüdisser, J. G. Pelton and I. Tinoco, Jr. J.
Biomolecular NMR 15, 173-176 (1999).
272. Biophysical Analysis of Nucleic Acids, I. Tinoco, Jr., in Current Protocols in
Nucleic Acid Chemistry, S. Beaucage, D. E. Bergstrom, G. D. Glick, R. A. Jones, Eds. pp. 7.1.1-7.1.8, John Wiley & Sons, New York, 2000.
273. High Resolution NMR Spectroscopy of Ribozymes, M. Zheng and I. Tinoco, Jr., in Ribozymes: Biochemistry and Molecular Biology. G. Krupp and R. K. Gaur, Eds, p. 297-314, Eaton Publishing, Natick, MA, 2000.
274. Thermodynamics of Formation of Secondary Structure in RNA, I. Tinoco, Jr. and M. Schmitz, in Thermodynamics in Biology, pp. 131-176, E. Di Cera, Ed. Oxford University Press, 2000.
275. Book: Nucleic Acids: Structures, Properties, and Functions, V. A. Bloomfield, D. M. Crothers and I. Tinoco, Jr., pp. 794, University Science Press, New York, 2000.
276. Solution Structure of Cobalt(III)Hexammine Complexed to the GAAA
Tetraloop, and Metal-Ion Binding to G•A Mismatches, S. Rüdisser and I. Tinoco, Jr., J.
Mol. Biol. 295, 1211-1223 (2000).
277. RNA motifs that determine specificity between a viral replicase and its
promoter. C.-H. Kim, C. C. Kao, and I. Tinoco, Jr., Nature Structural Biology, 5, 415-423, (2000).
278. Solution Structure and Metal-Ion Binding of the P4 Element from Bacterial
RNase P RNA. M. Schmitz and I. Tinoco, Jr. RNA, 6,1212-1225 (2000).
279. A retroviral RNA kissing complex containing only two G•C base pairs. C.-H.
Kim and I. Tinoco, Jr., Proc. Natl. Acad. Sci. USA 97, 9396-9401 (2000).
280. Nucleic Acids: Theory and experiment, P. Hagerman and I. Tinoco, Jr.,
Current Opinion Structural Biology. 10, 275-278 (2000).
281. Identification and Characterization of Metal Ion Binding Sites in RNA, R. L. Gonzalez, Jr. and I. Tinoco, Jr., in Nuclear Magnetic Resonance of Biological
21
Macromolecules, Methods in Enzymology, T. L. James, V. Dötsch, & U. Schmitz, Eds. Vol. 338, pp. 421-442 (2001), Academic Press, San Diego..
282. Book: Physical Chemistry: Principles and Applications in Biological Sciences, I. Tinoco, Jr., K. Sauer, J. C. Wang and J. D. Puglisi, Fourth edition, 2001, Prentice-Hall, Upper Valley, N. J.
283. Reversible Unfolding of Single RNA Molecules by Mechanical Force. J.
Liphardt, B. Onoa, S. B. Smith, I. Tinoco, Jr. and C. Bustamante, Science, 292, 733-737 (2001). Perspective by J. M. Fernandez, S. Chu, A. F. Oberhauser, pp. 653-654.
284. Formation of a GNRA tetraloop in P5abc can disrupt an inter-domain interaction in the Tetrahymena group I ribozyme. M. Zheng, M. Wu and I. Tinoco, Jr.,
Proc. Natl. Acad. Sci. USA, 98, 3695-3700 (2001).
285. Structural and thermodynamic studies on mutant RNA motifs that impair the specificity between a viral replicase and its promoter. C.-H. Kim and I. Tinoco, Jr., J.
Mol. Biol. 307, 827-839 (2001).
286. Physical Chemistry of Nucleic Acids. I. Tinoco, Jr. Ann. Rev. Phys. Chem. 54, 1-15 (2002).
287. The effect of force on thermodynamics and kinetics of single molecule
reactions. I. Tinoco, Jr. and C. Bustamante. Biophysical Chemistry 101-102, 513-533 (2002).
288. Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski’s Equality. J. Liphardt, S. Dumont, S. B. Smith, I.
Tinoco, Jr. and C. Bustamante, Science 296, 1832-1835 (2002). Perspective by D. A. Egolf, p. 1813.
289. A Two-state Kinetic Model for the Unfolding of Single Molecules by Mechanical Force. F. Ritort, C. Bustamante and I. Tinoco, Jr. Proc. Natl. Acad. Sci. USA,
99, 13544-13548 (2002).
290. Mechanical Unfolding of the T. thermophila Ribozyme. Identifying the Kinetic Barriers that Control the Unfolding of RNA. B. Onoa, S. Dumont, J. Liphardt ,
S. B. Smith, I. Tinoco, Jr. and C. Bustamante. Science, 299, 1892-1895 (2003). PubMed #10104
291. Force as a Useful Variable in Reactions: Unfolding RNA. I. Tinoco, Jr. Ann.
Rev. Biophys. Biomol. Struct. 33, 363-385 (2004). PubMed #4607
292. RNA Folding and Unfolding. B. Onoa and I. Tinoco, Jr. Curr. Opin. Struct.
Biol. 14, 1374-1379 (2004).
293. An Appreciation of John D. Ferry and the Mechanical Properties of Single
Molecules. I. Tinoco, Jr. Biophysical Chemistry, 112, 105-108 (2004).
22
294. Book: Physical Chemistry: Principles and Applications in Biological Sciences, I. Tinoco, Jr., K. Sauer, J. C. Wang and J. D. Puglisi, Fourth edition, Japanese translation, 2004, Prentice-Hall, Upper Valley, N. J.
295. The Effect of Force on Thermodynamics and Kinetics: Unfolding Single RNA
Molecules. I. Tinoco, Jr., D. Collin, P. T. X. Li. Biochem. Soc. Transactions, 32, 757-760 (2004).PubMed#4496
296. Temperature Control Methods in a Laser-Tweezers System. H. Mao, J. R.
Arias-Gonzalez, S. B. Smith, I. Tinoco Jr., and C. Bustamante . Biophys. J., 89 1-9 (2005).
297. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies. D. Collin, F. Ritort, C. Jarzynski, S. B. Smith, I. Tinoco, Jr. and C.
Bustamante. Nature, 437 231-234 (2005). News & Views. Rare returns on lost effort. W.
P. Wong and E. Evans, 437 198-199 (2005). PubMed #11654
298. Folding, Unfolding, and Dynamics of RNA. One Molecule at a Time. I. Tinoco, Jr., B. Onoa in The RNA World, 3rd edition, R. Gesteland, T. Cech, J. Atkins, Eds. pp. 723-745 (2005).
299. RNA Translocation and Unwinding Mechanism of HCV NS3 Helicase and its Coordination by ATP. S. Dumont, W. Cheng, V. Serebrov, I. Tinoco, Jr., A. M. Pyle, C.
Bustamante, Nature, 439 105-108 (2006). Commentary: Nature Struct Mol. Biol. 13, 101 (2006) PubMed #11658
300. Probing the Mechanical Folding Kinetics of TAR RNA by Hopping, Force-Jump and Force-Ramp Methods. P. T. X. Li, D. Collin, S. B. Smith, C. Bustamante, I.
Tinoco, Jr. Biophys. J., 90, 250-260 (2006). PubMed #11655
301. Modeling RNA Unfolding Under Mechanical Tension. J. Vieregg, I. Tinoco,
Jr., Molecular Physics, 104, 1343-1352 (2006). PubMed #11656
302. Determination of Thermodynamics and Kinetics of RNA Reactions by Force,
I. Tinoco, Jr. , P. TX. Li, C. Bustamante, Quart. Rev. Biophys. 39 (4), 1-36 (2006).
303. Unusual Mechanical Stability of a Minimal RNA Kissing Complex. P. TX. Li,
C. Bustamante, I. Tinoco, Jr. Proc. Natl. Acad. Sci. USA. 103, 15847-15852 (2006).
___________________________________________________________________
304. Single molecule force unfolding kinetics of RNA. I. Experimental measurements using optical tweezers. J.-D. Wen, M. Manosas, P. TX. Li, S. B. Smith, C.
Bustamante, F. Ritort, I. Tinoco, Jr., Biophys. J. , 92, 2996-3009 (2007).
305. Single molecule RNA force unfolding kinetics using optical tweezers. II.
Modeling experiments, M. Manosas, J.-D. Wen, P. TX. Li, S. B. Smith, C. Bustamante, I.
Tinoco, Jr., F. Ritort, Biophys. J. , 92, 3010-3021 (2007).
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306. Real-Time Control of the Energy Landscape by Force Directs the Folding of Single RNA Molecules P. TX. Li, C. Bustamante, I. Tinoco, Jr., Proc. Natl. Acad. Sci.
USA. 104, 7039-7044 (2007).
307. NS3 Helicase Actively Separates RNA Strands and Senses Sequence Barriers Ahead of the Opening Fork. W. Chen, S. Dumont, I. Tinoco Jr., C. Bustamante, Proc.
Natl. Acad. Sci. USA. 104, 13954-13959 (2007). Editor's choice in Science 317, 1295 (2007).
308. Characterization of the Mechanical Unfolding of RNA Pseudoknots. L. Green, C.-H. Kim, C. Bustamante, I. Tinoco, Jr., J. Mol. Biol. in press (2007).
309. Measurement of the Effect of Monovalent Cations on RNA Hairpin Stability.
J. Vieregg, C. Bustamante, I. Tinoco, Jr., J. Am. Chem. Soc. 129, 14966-14973 (2007).
310. Single-Molecule Mechanical Unfolding and Folding of a Pseudoknot in
Human Telomerase RNA. G. Chen, J.-D. Wen, I. Tinoco, Jr., RNA 13, 2175-88 (2007).