an ecohydrological investigation into the relationship

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Rob Starkie Supervisors: Professor Neil Macdonald and Dr Thea Wingfield Dissertation submitted as partial fulfilment for the degree of M.Sc. in Environmental Science School of Environmental Sciences, University of Liverpool, 2020-21 Word count: 9350 An ecohydrological investigation into the relationship between river flow regime and juvenile Salmonid populations in the River Ribble catchment, NW England.

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Page 1: An ecohydrological investigation into the relationship

Rob Starkie

Supervisors: Professor Neil Macdonald and Dr Thea Wingfield

Dissertation submitted as partial fulfilment for the degree of M.Sc. in Environmental Science

School of Environmental Sciences, University of Liverpool, 2020-21

Word count: 9350

An ecohydrological investigation

into the relationship between river

flow regime and juvenile Salmonid

populations in the River Ribble

catchment, NW England.

Page 2: An ecohydrological investigation into the relationship

Declaration

I hereby declare that the following dissertation is based on the results of investigations conducted by myself, and that this dissertation is of composition. This dissertation has not, in whole, or part, been previously submitted, to any university of institution for any degree, diploma, or other qualification. Work other than my own is clearly indicated in the text by reference to the relevant researcher or publications. Signed: R. Starkie Date: 09/09/2021 The work presented in this dissertation is the work of the candidate. Conditions of the relevant ordinance and regulations of the University of Liverpool have been fulfilled.

Page 3: An ecohydrological investigation into the relationship

Acknowledgments

I would like to thank my supervisors Professor Neil Macdonald and Dr. Thea

Wingfield for their advice and guidance throughout my MSc Dissertation

project. I would also like to thank Mike Forty, from The Ribble Rivers Trust for

his help and advice during this project. Finally, I would like to thank The

Ribble Rivers Trust, as this project would not have been possible without

them sharing their electrofishing data with me.

Page 4: An ecohydrological investigation into the relationship

Abstract

Atlantic Salmon (Salmo salar) and Brown Trout (Salmo trutta) are key species

in the river systems in the UK and are protected as priority species under the

UK POST-2010 Biodiversity Framework. They require ecological stability and

are an indicator of water and habitat quality. The number of juvenile Atlantic

Salmon and Brown Trout have been decreasing in River Ribble and its sub-

catchments, the Calder and Hodder since 2009. The aim of this study is to

determine if high flow events are negatively impacting the number of juvenile

Salmonids in the Ribble system and to determine if the number of adult

Salmonids returning to spawn is decreasing.

Cumulative densities of Atlantic Salmon fry and Brown Trout fry for the Ribble,

Calder and Hodder were obtained from The Ribble Rivers Trust who undertake

annual electrofishing surveys in the summer. Hydrological data from the

National River Flow Archive (NRFA) was analysed using the Indicators of

Hydrologic Alteration (IHA) software. The flow regimes of the Ribble, Calder

and Hodder all indicate an increase in annual median flow since 2009 and an

increase in December median flow. Statistically significant relationships

between March median flow and the cumulative densities of Atlantic Salmon

and Brown Trout fry were observed in each of the Ribble, Hodder and Calder,

indicating that high flows in March result in lower cumulative densities of fry in

the summer.

Page 5: An ecohydrological investigation into the relationship

Table of Contents

1. Introduction 1

1.1. Flow Regime 1

1.1.1. Human Impacts on Flow Regime 2

1.2. Salmonids 2

1.2.1. Lifecyle of Salmonids 3

1.2.2. Salmonids and Flow Regime Requirements 4

1.2.2.1. Spawning 5

1.2.2.2. Incubation 5

1.2.2.3. Fry emergence 6

1.2.3. Temperature and early life stages of Salmonids 6

1.2.4. Other pressures on Salmonids 7

1.2.5. Salmonid trends in the UK 8

1.2.6. Salmonids in the Ribble Catchment 8

1.3. Aims of research 10

2. Methodology 11

2.1. Study area 11

2.2. Electrofishing Data 12

2.3. Daily Flow Data 14

2.3.1. Indicators of Hydrologic Alteration (IHA) 14

2.4. Rod Catch and Fish Counter Data 15

2.4.1. Limitations of Rod Catch and Fish Counter Data 15

2.5. Atmospheric Temperature Data 16

2.6. Statistical Analysis 16

3. Results 17

Page 6: An ecohydrological investigation into the relationship

3.1. Hydrological Data 17

3.1.1. Annual Flow Data 17

3.1.2. Indicators of Hydrologic Alteration (IHA) Analysis: IHA Parameter 1 18

3.2. Salmonid Data 21

3.2.1. Cumulative Density of Atlantic Salmon fry 21

3.2.2. Cumulative Density of Brown Trout fry 22

3.3. Rod Catch Data 24

3.4. Waddow Fish Counter Data 25

3.5. Analysis of Flow and Salmonids 26

3.6. Atmospheric temperature and Salmonids 30

4. Discussion 31

4.1. Hydrological Data 31

4.2. Salmonid Data 32

4.2.1. Rod Catch and Fish Counter 33

4.2.2. Juvenile Salmonids and Median Monthly Flow 33

4.2.3. Salmonids and Atmospheric Temperature 36

4.3. Future Climate Scenarios 37

4.4. Management Solutions 37

5. Conclusion 38

Bibliography 41

Appendices 50

Appendix A: NFCS Trout fry Classifications (2009-2020) 50

Appendix B: NFCS Salmon Fry Classifications (2009-2020). 62

Appendix C: Data used for Dissertation 74

Record of Meetings 75

Page 7: An ecohydrological investigation into the relationship

List of Figures

Figure 1: Basic life cycle of Atlantic Salmon (Salmo salar) from freshwater phase to

salt water phase (Taken from, Marsh (2020) …………………………………………….4

Figure 2: (a) Total declared rod catch of Salmon (1956-2019) and (b) total declared

rod catch of Trout (1978-2019) for England and Wales (Environment Agency (EA),

2020) …………………………………………….…………………………………………...8

Figure 3: Cumulative densities of Atlantic Salmon fry recorded on the Ribble, Calder

and Hodder from electrofishing surveys conducted by The Ribble Rivers Trust (The

Ribble Rivers Trust, 2020) …………………………………………………………………9

Figure 4: Cumulative densities of Atlantic Salmon fry recorded on the Ribble, Calder

and Hodder from electrofishing surveys conducted by The Ribble Rivers Trust (The

Ribble Rivers Trust, 2020) ……………………………………………………………….10

Figure 5: The location of the River Ribble, Calder and Hodder in North West

England (The Ribble Rivers Trust, 2015) ……………………………………………….12

Figure 6: Locations of sites used from The River Ribble Trust electrofishing surveys

of Atlantic Salmon and Brown Trout for the River Ribble (42 sites), Calder (48 sites)

and Hodder (35 sites) ……………………………………………………………………..13

Figure 7: Ribble (71006) annual median flow (m3s-1) and long term annual median

flow (m3s-1) (1969-2019) ………………………………………………………………….17

Figure 8: Calder (71004) annual median flow (m3s-1) and long term annual median

flow (m3s-1) (1964-2019) ………………………………………………………………….18

Figure 9: Hodder (71008) annual median flow (m3s-1) and long term annual median

flow (m3s-1) (1976-2019) ………………………………………………………………….18

Figure 10: IHA Parameter 1 Median monthly flows (m3s-1) for (a) Ribble (1969-

2019); (b) Calder (1964-2019); (c) Hodder (1976-2019) …………………………......19

Figure 11: Comparison of Median monthly flows (m3s-1) for (a) Ribble (1969-2019

and 2009-2019); (b) Calder (1964-2019 and 2009-2019); (c) Hodder (1976-2019 and

2009-2019) …………………………………………………………………………………20

Figure 12: Cumulative density (Fish/100m2) of Atlantic Salmon fry in the: (a) Ribble;

(b) Calder; (c) Hodder (2009-2020) …………………………………………….............22

Figure 13: Cumulative density (Fish/100m2) of Brown Trout fry in the: (a) Ribble; (b)

Calder; (c) Hodder (2009-2020) ………………………………………………...............23

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Figure 14: Total declared rod catch of Atlantic Salmon in the Ribble (1996-2019)

(Environment Agency, 2020) …………………………………………...........................24

Figure 15: Total declared rod catch of Brown Trout in the Ribble (1996-2019)

(Environment Agency, 2020) …………………………………………...........................25

Figure 16: Number of rod licenses sold in Lancashire and Cumbria (2010-2018)

(Environment Agency, 2015) …………………………………………...........................25

Figure 17: Number of fish counted moving (a) upstream and (b) downstream at

Waddow weir fish counter (1996-2019) (The Ribble Rivers Trust) ……………….....26

Figure 18: Relationship between March median monthly flow (m3s-1) and the

cumulative density of Brown Trout fry (Fish/100m2) for (a) Ribble, (b) Calder and (c)

Hodder (2009-2019) …………………………………………........................................28

Figure 19: Relationship between March median monthly flow (m3s-1) and the

cumulative density of Atlantic Salmon fry (Fish/100m2) for (a) Ribble, (b) Calder and

(c) Hodder (2009-2019) …………………………………………..................................29

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List of Tables

Table 1: National Fisheries Classification System (NFCS) for Brown Trout and

Atlantic Salmon 14

Table 2: IHA Parameter Groups (Nature Conservancy, 2009) 15

Table 3: Spearman correlation matrix of median monthly flow (m3s-1) and cumulative

density (fish/100m2) of Atlantic Salmon and Brown Trout Fry for the Ribble,

Calder and Hodder. 27

Table 4: Spearman correlation matrix of mean air temperature (°c) and cumulative

density of Brown Trout and Atlantic Salmon (2009-2019). 31

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1

1. Introduction

1.1. Flow Regime

The flow regime of a river is an important factor in determining the structure and

function of stream ecosystems (Poff et al., 1997; Poff and Zimmerman, 2010;

Warren et al., 2015). It is widely recognized and accepted that flow regime is

critical for sustaining the health of riverine ecosystems, creating, and

maintaining river morphology and sustaining water quality via the flushing of

nutrients and contaminants (Old and Acreman, 2006, Warren et al., 2015).

These processes influence the abundance and distribution of biota and in turn

also determine the spatial and temporal distribution of fish (Jowett et al., 2005,

Poff and Zimmerman, 2010; Warren et al., 2015). Aquatic organisms are

adapted to a range of natural flow variations (Poff et al., 1997; Richter et al,

2003; Enders et al., 2009), which refer to the historical status of the river before

the development of the river catchment (Enders et al., 2009). Flow regime is of

the upmost importance in sustaining the ecological integrity of riverine

ecosystems (Poff et al., 1997). Poff et al., (1997) outlines the 5 main elements

that define the variability in flow regime and thus also the ecological processes

of the river ecosystems, these include:

(1) The magnitude of discharge of a given time period

(2) The occurrence frequency of different magnitudes of discharge

(3) The duration of flow events

(4) The timing

(5) The rate of change of hydrological condition

These 5 factors influence ecological integrity both directly and indirectly and so

any modification to flow will have a cascading impact on the ecological integrity

of a river ecosystem (Karr, 1991; Poff et al., 1997).

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2

1.1.1. Human Impacts on Flow Regime

Human activities can also influence and alter the natural flow regime both

directly and indirectly. These changes can result in reduced or increased flow,

and cause temporal and spatial changes to flow regimes (Poff et al., 1997).

Direct activities include flow regulation using weirs and damns and/or water

extraction (Benejam et al., 2010). Indirect activities such as land use patterns

also impact fish populations (Warren et al., 2015).

The amount of water abstracted from non-tidal surface water and groundwater

per year in England has declined from a peak of 11.6 billion cubic metres in

2001 to 8.2 billion cubic metres in 2008 (Defra, 2019). However, following the

increase in water usage for the generation of electricity, abstraction has

increased to 10.4 billion cubic metres in 2017 (Defra, 2019). Due to the

influence that human activities can have on the flow regime of rivers, the Water

Framework Directive (WFD) was developed by the European Commission

(EC). The WFD requires the development of relevant procedures to help ensure

there is sufficient mitigation of any negative impacts created as a result of water

abstraction and/or impoundments (Old and Acreman, 2010).

1.2. Salmonids

Atlantic Salmon (Salmo salar) and Brown Trout (Salmo trutta) are migratory fish

native to the UK. They are anadromous, meaning they spend their early life

stages in freshwater, before travelling into saltwater environments to feed,

before returning back to freshwater to spawn (Crisp, 1999; Jonsson and

Jonsson, 2011). Atlantic Salmon and Brown Trout are protected priority species

under the UK Post-2010 Biodiversity Framework (Warren et al., 2015) and are

both considered to be economically important species (Pennel and Prouzet,

2009; Gillson et al., 2020).

As both species require good water quality they are often used as an indicator

species for sound management and conservation of fluvial and riverine

resources (Crisp, 2000). Both species are also considered to be a useful

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3

indicator of the impact of flow regime on ecosystems across a variety of scales

(Milner et a., 2012).

1.2.1. Lifecyle of Salmonids

Atlantic Salmon and Brown Trout are known for their variable life history

strategies and adaptations to their local environments (Bjørnås, 2020). A basic

life cycle (Figure 1) is common of both the Atlantic Salmon and Brown Trout

(Crisp, 2000). On the spawning grounds the female creates a depression in the

gravel of the riverbed called a Redd and deposits her eggs into it (Crisp, 2000).

In the United Kingdom (UK) this typically occurs between November and

February.

The embryos then develop over winter within the gravel substratum and hatch

in the subsequent spring (Jonsson and Jonsson, 2011). Once hatched they

become known as alevins, and for the first several weeks they dwell in the

bottom substratum, feeding on yolk, located in a sac on their bellies (Crisp,

2000; Jonsson and Jonsson, 2011; Bjørnås, 2020). Once the yolk sacs are

nearly depleted the alevins emerge from the gravel and become known as fry

(Crisp, 2000). The fry begin externally feeding on small invertebrates found in

the water column and within the substrate (Jonsson and Jonsson, 2011). This

period is associated with high mortality (Armstrong and Nislow, 2006; Bjørnås,

2020).

Over autumn the fry develop into parr and are recognizable by the dark vertical

bars along their bodies (Jonsson and Jonsson, 2011). They feed on aquatic

insects and growth continues until they reach a body length of 10-15cm, at

which the parr transform to smolts (Jonsson and Jonsson, 2011) through a

process typically referred to as smolting or smoltification. Atlantic Salmon

smolts typically migrate to sea in the spring and very rarely return to spawn the

year they move to sea, instead they stay at sea for 1-4 years before attaining

maturity and returning to spawn (Jonsson and Jonsson, 2011). Brown Trout

smolts however feed mainly in estuaries and coastal waters and rarely migrate

into open sea, with the majority of the Brown Trout feeding within 100km of the

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4

river mouth (Jonsson and Jonsson, 2011). Unlike Atlantic Salmon, Brown Trout

often return to their home river to spawn or for wintering.

1.2.2. Salmonids and Flow Regime Requirements

The complex freshwater life cycle of Atlantic Salmon and Brown Trout have

evolved to utilize the natural variations in flow regime (Enders et al., 2009) and

the general flow requirements of Atlantic Salmon and Brown Trout are well

established. Due to their importance, Salmonids have been the chief focus of

research into the impacts of altered flow regimes (Milner et al., 2011; Warren

et al., 2015; Quinn, 2018)

Despite the widespread view that Salmonids prefer high velocity habitats,

different life stages require different flow regime characteristics (Nislow and

Armstrong, 2012; Warren et al., 2015). The effects, both direct and indirect, of

river flow will impact different Salmonid life stages in different and often

contrasting ways (Milner et al., 1998; Nislow and Armstrong, 2012; Warren et

Figure 1: Basic life cycle of Atlantic Salmon (Salmo salar) from freshwater phase to salt water phase (Taken from, Marsh (2020).

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5

al., 2015). The impact on the different life stages of salmonids is dependent on

timing and duration of low and high flow events (Solomon and Sandbrook,

2004; Warren et al., 2015). High flow events typically have a greater impact

upon juvenile Salmonids, and low flow events are more likely to impact adult

Salmonids returning to spawn (Nislow and Armstrong, 2012). As the focus of

this research is on juvenile Salmonids, the flow requirements of the relevant

freshwater life stages will be outlined below.

1.2.2.1. Spawning

The flow conditions in autumn and early winter will have an impact on the

spawning location and spawning success of both Atlantic Salmon and Brown

Trout (Gray, 2015). Low flow conditions in these months will have a significant

impact on spawning location, due to the inaccessibility of upstream spawning

grounds (Crisp, 1999). This is likely to have a marked effect upon the

subsequent Salmonid parr production (Gray, 2015). The choice of spawning

location is believed to be strongly influenced by the characteristics of the

riverbed, which is determined by the hydraulic conditions that distribute and sort

the sediment (Gray, 2015). There is evidence to suggest that Salmonids may

choose not to spawn during periods of rapidly changing flow conditions, this

may also impact spawning success (Moir et al., 2006; Gray, 2015).

1.2.2.2. Incubation

The survival of the egg to fry is largely dependent on winter flow conditions and

temperature (Crisp, 1999). Winter flood events are correlated with low egg

survival, as they result in the displacement and mobilization of sediment which

can damage and/or entrap the eggs (Crisp, 1999; Warren et al., 2015). Egg

survival is also correlated with low discharge and cold winters, as low flow

conditions leaves the eggs exposed and vulnerable to freezing and desiccation

(Crisp, 1999).

High flows in the spring can scour the Redds and result in the transport of eggs

and/or alevins downstream to less favourable conditions, this phenomenon is

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6

referred to as ‘wash out’ (Crisp, 1999; Warren et al., 2015). Wash out can cause

mortality to intra-gravel stages of Salmonid (Jensen and Johnsen, 1999; Gray,

2015). This can occur by physical shock to the egg, damage to the Redd,

predation of the eggs during transportation in the water column and due to the

deposition of the egg in sup-optimal locations for development (Crisp, 1999;

Jensen and Johnsen, 1999; Cowx and Fraser, 2003, Gray, 2015).

1.2.2.3. Fry emergence

The emergence of fry is thought to be a compromise between the fry gaining

an advantage through the early establishment of territory against the risk of

early season high flow events (Fausch et al., 2001; Armstrong and Nislow,

2006). However, climate change and more extreme weather patterns may be

impacting this adaptation. After emergence Salmonid fry typically travel less

than 100m (Cowx and Fraser, 2003), and seek out low velocity nursery

grounds, due to their limited swimming ability and size (Crisp, 1999; Gray,

2015). During this stage, the Salmonid fry are still susceptible to high flow

events and wash out downstream (Crisp, 1999; Gray, 2015).

However, over time, as the fry increase in size through feeding, the risk of wash

out is reduced due to increased swimming ability meaning they can withstand

higher velocities (Heggenes, 1990; Crisp, 1999; Hendry and Cragg-Hine,

2000). Research by Heggenes and Traaen (1998) showed that over an eight-

week period of feeding, the velocity needed to displace fry increased from 19

cm/s-1 to 50 cm/s-1.

1.2.3. Temperature and early life stages of Salmonids

There has been a significant amount of research into other factors that impact

Salmonid numbers, including the impacts of atmospheric temperature and

water temperature. Salmonids have very limited control over their body

temperature (Crisp, 1991; Environment Agency, 2008; Jonsson and Jonsson,

2011), and therefore temperature has an impact upon the distribution,

migration, growth, reproduction, and survival of Salmonids (Environment

Agency, 2008).

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7

The rate of Salmonid egg development is temperature dependent (Crisp, 1988;

Environment Agency, 2008; Jonsson and Jonsson, 2011). Research has

shown the relationship between the duration of the incubation period and

temperature, with lower temperatures resulting in longer incubation periods and

higher temperatures resulting in shorter incubation periods (Crisp, 1988; Kane

1988). Eggs which develop at lower temperatures typically hatch much smaller

in size but with more yolk, compared to eggs which develop at medium-high

temperatures, which are larger in size but have less yolk (Jonsson and

Jonsson, 2011).

Temperature also impacts Salmonids at the alevins life stage in a similar way,

with lower temperatures resulting in a longer period between hatching and first

feeding, whilst higher temperatures result in a shorter period between hatching

and first feeding (Kane, 1988; Jensen et al., 1989; Environment Agency, 2008).

1.2.4. Other pressures on Salmonids Salmonids are affected by several other pressures not just alterations to the

flow regime or temperature changes. These include but are not limited to

(Hendry and Cragg-Hine, 2000; Hansen et al., 2012; Gray, 2015):

• Water pollution from chemicals and organic wastes

• Physical barriers to migration

• Over exploitation at sea and over exploitation in freshwater

environments

• Siltation of spawning gravels caused by soil erosion

• Eutrophication caused by excess nutrients and fertilizers, in particular

phosphate-based fertilizers

• Habitat loss and destruction of spawning grounds

• Parasites and disease such as to Ulcerative dermal necrosis (UDN)

• Climate Change

• Invasive species

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8

1.2.5. Salmonid trends in the UK

Rod catch data from the Environment Agency (EA) for the Atlantic Salmon and

Brown Trout appear to show that their numbers have been decreasing over

time (Figure 2a and Figure 2b). With numbers of Atlantic Salmon caught falling

below the long-term average since 2013 and Brown Trout since 2012.

1.2.6. Salmonids in the Ribble Catchment

Since 2008 the Ribble Trust have carried out electrofishing every summer in

the Ribble catchment, along with the catchments of its two main tributaries, the

Hodder, and the Calder. Annual fisheries reports, by The Ribble Rivers Trust,

shows that cumulative densities of both Atlantic Salmon fry (Figure 3) and

Brown Trout fry (Figure 4) have decreased since 2010 (The Ribble Rivers Trust,

2020). The Ribble Trust have hypothesized that high flow events during critical

1956 1966 1976 1986 1996 2006 2016

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5,000

10,000

15,000

20,000

25,000

30,000

35,000

40,000

Year

Tota

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atch

Total Long term mean (a)

1978 1988 1998 2008 2018

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20,000

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40,000

50,000

60,000

Year

Tota

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Total Long term mean(b)

Figure 2: (a) Total declared rod catch of Salmon (1956-2019) and (b) total declared rod catch of Trout (1978-2019) for England and Wales (Environment Agency (EA), 2020).

Page 18: An ecohydrological investigation into the relationship

9

early life stages may be a potential reason for the decline in both Atlantic

Salmon and Brown Trout fry (The Ribble Rivers Trust, 2020).

There is also anecdotal evidence that the decline in Atlantic Salmon is not a

new phenomenon, and that the decrease has been occurring over a much

longer period of time. In the book ‘The River Ribble’ by Freethy (1988) it states

that the people of Lancashire used to travel to Paythorne Bridge, typically

during the third week of November, for the event known locally as ‘Salmon

Sunday’. The people would watch as the Salmon travelled upstream to their

spawning grounds. However, Freethy (1988) also explains that the locals state

there appears to be fewer fish returning each year.

The history of reduced number of Salmonids in the Ribble also goes back even

further. Walshingham (1993) refers to the work of Houghton (1952) who traced

the history of Salmon and Trout numbers in the Ribble back to medieval times.

In 1899 and 1900 a total number of zero Salmon were caught in the Ribble,

which was attributed to pollution from heavy industry, overfishing and the

number of weirs preventing upstream migration (Walshingham, 1993). The

recovery of the Ribble from the levels seen in 1900 was largely due to the

introduction of the Fisheries Act in 1923 and the restocking of the Ribble using

20,000 Fry from the River Thurso in Scotland (Walshingham, 1993).

Furthermore, the Witcherwell hatchery which was located in the upper section

of the Hodder also stocked the Ribble system, before closing in 1997.

Figure 3: Cumulative densities of Atlantic Salmon fry recorded on the Ribble, Calder and Hodder from electrofishing surveys conducted by The Ribble Rivers Trust (The Ribble Rivers Trust, 2020)

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10

1.3. Aims of research

This study will assume that flow is the major determinant affecting juvenile

Salmonid populations in the River Ribble and its sub-catchments. However,

impacts of other important factors such as temperature will be highlighted but

discussed in less detail. Furthermore, this study will focus solely on the

freshwater catchment phase of the Atlantic Salmon and Brown Trout life cycle

in the River Ribble, Calder and Hodder. The aims and objectives of this

research are:

1. To determine if high flow events in the River Ribble and its sub-catchments

are negatively impacting the number of juvenile Salmonids

a. Assess the flow regime of the Ribble, Calder and Hodder

2. To determine if a decrease in returning Salmonid fish stock is responsible

for the decrease in the number of juvenile Salmonids

a. Use fish counter data and rod catch data as a proxy for the number

of adult Salmonids returning to spawn

3. To determine if there is a relationship between temperature and the number

of juvenile Salmonids in the River Ribble and its sub-catchments

a. Use local atmospheric temperature data to assess if there is a

relationship between temperature and juvenile Salmonids.

Figure 4: Cumulative densities of Atlantic Salmon fry recorded on the Ribble, Calder and Hodder from electrofishing surveys conducted by The Ribble Rivers Trust (The Ribble Rivers Trust, 2020)

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11

2. Methodology

2.1. Study area

The Ribble catchment is located in the North West of England in the United

Kingdom (Figure 5). The source of the River Ribble is at the confluence of Gayle

Beck and Cam Beck, located near the Ribblehead viaduct in the Yorkshire

Dales (The Ribble Rivers Trust, 2021a). The Ribble flows 121km through

Yorkshire and Lancashire (Gray, 2015), before flowing out into the Irish Sea

between Southport and Lytham (Figure 5).

The upper Ribble is sparsely populated and is primarily used for sheep farming.

As the River Ribble flows towards Lancashire, the land becomes more fertile

resulting in dairy farming and increased areas of pasture (The Ribble Rivers

Trust, 2021a). The River Ribble grows considerably in the lower regions of the

catchment, where the River Hodder and River Calder join just after Mitton

forming the ‘Big Ribble’. This region again consists of fertile land used for

pasture and dairy farming (NRFA, 2021). The Ribble becomes tidal in Preston

and flows through the fertile Fylde plain and out into the Irish Sea.

The River Hodder originates within the Forest of Bowland, an area of

Outstanding Natural Beauty, with the uplands being in the Bowland Fells Site

of Special Scientific Interest (SSSI) (The Ribble Rivers Trust, 2021b). The

Hodder catchment is mostly agricultural, with small towns such as Slaidburn,

and Dunsop Bridge. Stocks Reservoir is also within the Hodder catchment and

is an important water source for the population of the North West (The Ribble

Rivers Trust, 2021b).

The River Calder originates in the moorlands above Colne, before joining the

Ribble at Whalley. The Calder catchment is predominately urban, and its

tributaries all flow through historically industrialised areas (The Ribble Rivers

Trust, 2021c). Much of the Calder and its tributaries have been heavily modified

in the past by industrial development.

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12

2.2. Electrofishing Data

Electrofishing data was obtained from The River Ribble Trust. They have

carried out electrofishing surveys every summer since 2008 on sites on the

Ribble, Calder, and Hodder. The River Ribble Trust applied methodology is

adapted from Crozier and Kennedy (1994) method and is outlined in detail in

their 2020 Fisheries Monitoring Report of the Ribble Catchment (The River

Ribble Trust, 2020). Through the combination of their adapted Crozier and

Kennedy (1994) method and the Zippin (1956) K-Pass removal method, they

generate Fry densities per 100m2 for each of the sites and individual

catchments (The River Ribble Trust, 2017; 2018; 2019; 2020)

From this data sites were manually selected on the basis that they needed to

have been continually surveyed since 2009. In total 42 sites were selected

within the Ribble catchment, 48 sites from within the Calder catchment and 35

Figure 5: The location of the River Ribble, Calder and Hodder in North West England (The Ribble Rivers Trust, 2015).

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13

sites from within the Hodder catchment (Figure 6). These sites were then

inputted into a CSV file in Microsoft Excel and uploaded into Quantum

Geographic Information System (QGIS) 3.4.10 and mapped using their XY

National Grid coordinates (Figure 6). The sites were then classified for each

year (between 2009 and 2019) for both Atlantic Salmon and Brown Trout using

the National Fisheries Classification System (NFCS) (Table 1) and mapped

using QGIS (Appendix A and Appendix B).

Figure 6: Locations of sites used from The River Ribble Trust electrofishing surveys of Atlantic Salmon and Brown Trout for the River Ribble (42 sites), Calder (48 sites) and Hodder (35 sites).

Page 23: An ecohydrological investigation into the relationship

14

2.3. Daily Flow Data

Daily flow data was obtained from the National River Flow Archives (NRFA)

database. NRFA gauging stations were selected for each of the Ribble (station

number 71006 Ribble at Henthorn), Calder (71004 Calder at Whalley Weir) and

Hodder (71008 Hodder at Hodder Place) and daily flow data downloaded.

2.3.1. Indicators of Hydrologic Alteration (IHA)

The daily flow data for the Ribble, Calder and Hodder was then analysed using

the Indicators of Hydrologic Alteration (IHA) method, developed by Richter et

al., (1996) using the software available from the Conservation Gateway website

and detailed instructions are outlined by Nature Conservancy (2009) in the IHA

version 7.1 user manual.

IHA analyses the NRFA daily flow data to statistically analyse inter-annual

variation by using a range of biologically relevant hydrological parameters

(Richter et al., 1996; Nature Conservancy, 2009). The IHA model uses 33

different parameters in order to analyse the daily flow data, with each parameter

being calculated for each year in the NRFA data series (Richter et al., 1996;

Gray, 2015). The 33 parameters are organised into five parameter groups

(Table 2).

Grade Description Trout fry per 100m2 Salmon fry per 100m2

A Excellent >38 >86

B Good 17-38 45-86

C Fair 8-16 23-44

D Poor 3-7 9-22

E Very Poor 1-2 1-8

F No Fish Present 0 0

Table 1: National Fisheries Classification System (NFCS) for Brown Trout and Atlantic Salmon

Page 24: An ecohydrological investigation into the relationship

15

IHA then calculates the general tendency and dispersion of the 33 attributes

based on the values from the previous step in order to produce inter-annual

statistics for the daily flow data (Richter et al., 1996; Nature Conservancy, 2009;

Gray, 2015). The IHA software produces a series of tables and graphs that can

be used to analyse the NRFA daily flow data. A full list can be found in the IHA

version 7.1 user manual (Nature Conservancy, 2009).

2.4. Rod Catch and Fish Counter Data

Atlantic Salmon and Brown Trout rod and net catch data (1996-2020) was

obtained from the Environment Agency (EA) Salmonid Statistics report on the

Government website. Rod licence data was also obtained from the EA for the

Lancashire and Cumbria region. The number of rod licenses will be used as a

proxy for fisheries effort.

Fish counter data was provided by The River Ribble Trust, for the fish counter

located at Waddow weir, located near Waddow Hall (located on the Ribble

upstream of the confluence with both the Calder and Hodder). The rod and net

catch data and the fish counter data will be used as a proxy for the number of

Salmonids returning to the Ribble system.

2.4.1. Limitations of Rod Catch and Fish Counter Data The introduction of the Salmon and Freshwater Fisheries act in 1975 made it

compulsory for all fisheries to declare the total number of Salmon caught

annually in their rivers (Gray, 2015). However, there are some significant

IHA Parameter Description

1 Magnitude of monthly water conditions

2 Magnitude and duration of extreme water

conditions

3 Timing of annual extreme water conditions

4 Frequency and timing of high and low pulses

5 Rate and frequency of water condition change

Table 2: IHA Parameter Groups (Nature Conservancy, 2009)

Page 25: An ecohydrological investigation into the relationship

16

flaws in this process which may impact the accuracy of the data, such as

there is no quantifiable estimate given of fisheries effort with the rod catch

data (Thorley et al., Gray, 2015).

Limitations of the fish counter data includes the fact that Waddow weir is

located further up the Ribble, above the confluence with the Calder and

Hodder. This means that the fish counter does not represent the entire

system. It does not count any fish travelling upstream or downstream on the

Calder or Hodder, only the areas available for spawning upstream of that point

on the Ribble. The fish counter also does not discriminate between species,

but they are typically considered to be reflective of Atlantic Salmon and Brown

Trout numbers.

2.5. Atmospheric Temperature Data

Atmospheric Temperature Data was obtained from the Met Office. The time-

series data included monthly, seasonal, and annual values of mean

temperature for the North West England and North Wales.

2.6. Statistical Analysis

Statistical analysis of flow characteristics (median monthly flows), and

atmospheric temperature in relation to the cumulative densities of Atlantic

Salmon and Brown Trout fry were all carried out in Minitab 19, in the form of

Spearman’s correlation.

Page 26: An ecohydrological investigation into the relationship

17

3. Results

3.1. Hydrological Data

3.1.1. Annual Flow Data

Preliminary analysis of the NRFA data shows the presence of ‘wet’ and ‘dry’

years. ‘Wet’ years are considered to be when the annual median flow is higher

than the median flow for the whole data set, and ‘dry’ years are when the annual

median falls below the median for the whole data set.

Analysis of the Ribble (71006) shows that since 2009, a total of 8 years have

been above the long term median annual flow (6.30 m3 s-1) (Figure 7). Analysis

of the Calder shows that since 2009 total of 6 years have been above the long

term median annual flow (4.94 m3 s-1) (Figure 8). The Hodder has experienced

a total of 9 years above the long term median annual flow (4.21 m3 s-1) since

2009 (Figure 9). The Ribble, Calder and Hodder all experienced the lowest

annual median flow in 1996 (2.58 m3 s-1, 2.46 m3 s-1 and 1.74 m3 s-1 respectively)

(Figure 7, 8 and 9). The Ribble experienced its highest annual median flow in

2007, with 10.85 m3 s-1, however it is closely followed by 10.79 m3 s-1 in 2012

(Figure 7). The Calder experienced its highest annual median flow of 6.94 m3

s-1 in 2012 (Figure 8) as did the Hodder with 7.25 m3 s-1 (Figure 9).

0

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1969 1979 1989 1999 2009 2019

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Figure 7: Ribble (71006) annual median flow (m3s-1) and long term annual median flow (m3s-1) (1969-2019).

Page 27: An ecohydrological investigation into the relationship

18

3.1.2. Indicators of Hydrologic Alteration (IHA) Analysis: IHA Parameter 1

The Ribble, Calder and Hodder all show peaks in median monthly flows in

January (14. 70 m3 s-1, 9.02 m3 s-1 and 9.37 m3 s-1) (Figure 10). Although the

Calder does not have a singular dominant peak, as January and December

(9.26 m3 s-1) are relatively similar (Figure 10b). The Ribble, Calder and Hodder

all experience a large decrease in median monthly flow between January and

February (Figure 10). The Hodder shows an increase in median monthly flow

in March, unlike the Ribble and Calder which show more of a plateau (Figure

10). All 3 rivers show decreases in median flow through spring, and all reach a

0

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8

1964 1974 1984 1994 2004 2014

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Figure 8: Calder (71004) annual median flow (m3s-1) and long term annual median flow (m3s-1) (1964-2019).

0

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Figure 9: Hodder (71006) annual median flow (m3s-1) and long term annual median flow (m3s-1) (1976-2019).

Page 28: An ecohydrological investigation into the relationship

19

minimum median flow in July (2.21 m3 s, 2.40 m3 s-1 and 1.63 m3 s-1) (Figure

10).

IHA parameter 1 is applied to the daily flow data for the Ribble, Calder and

Hodder for the time period 2009-2019 and compared to the median flows of the

long-term data. The Ribble shows a much higher December median flow (24.25

m3s-1) between 2009 and 2019 compared to 1969-2019 (13.53 m3s-1) (Figure

11a). The Calder also shows the same trend, with 2009-2019 December

median flow (11.20 m3s-1) being higher than the long-term December median

flow (9.26 m3s-1) (Figure 11b), as does the Hodder (12.70 m3s-1 and 8.81 m3s-

1) (Figure 11c).

0

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r

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Figure 10: IHA Parameter 1 Median monthly flows (m3s-1) for (a) Ribble (1969-2019); (b) Calder (1964-2019); (c) Hodder (1976-2019).

Page 29: An ecohydrological investigation into the relationship

20

The January median flows for the Ribble and Hodder are relatively similar for

both periods, however, the Calder shows a lower January median flow in the

2009-2019 period (7.12 m3s-1 compared to 9.02 m3s-1) (Figure 11b). All 3 rivers

also show a similar increase in February median flows in the 2009-2019 period

compared to the long-term median flows (Figure 11). Median flows in March,

April, May, June, and July for the 3 rivers are all relatively similar for both

periods (Figure 11). However, August and September median flows are

noticeably higher in the 2009-2019 period (Figure 11) particularly in the Ribble

and Hodder.

0

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1969-2019 2009-2019

(a)

Figure 11: Comparison of Median monthly flows (m3s-1) for (a) Ribble (1969-2019 and 2009-2019); (b) Calder (1964-2019 and 2009-2019); (c) Hodder (1976-2019 and 2009-2019).

Page 30: An ecohydrological investigation into the relationship

21

3.2. Salmonid Data

3.2.1. Cumulative Density of Atlantic Salmon fry

There is a clear decrease in the cumulative density of Atlantic Salmon fry in the

Ribble (Figure 12a). A sharp drop in the cumulative density occurs in 2012,

where levels drop from a cumulative density of 1057 fish/100m2 to 285

fish/100m2 in 2013 (Figure 12a). This is then followed by a further decrease in

in 2016 (91 fish/100m2) before recovering slightly in 2018 (304 fish/100m2).

However, this is followed by a decrease to a low point in the data in 2019 (61

fish/100m2).

There is also a clear decrease cumulative density of Atlantic Salmon fry in the

Calder (Figure 12b). The Calder also shows a similar pattern to the Ribble, with

a series of peaks and troughs starting with the peak in 2010 (215 fish/100m2)

(Figure 12b). The 48 sites in Calder recorded a cumulative density of 0

fish/100m2 in 2016, 2019 and 2020 (Figure 12b).

The Hodder (Figure 12c) also shows a clear decrease in the cumulative density

of Atlantic Salmon Fry. The Hodder is also characterized by the same trend as

the Ribble and Calder, starting with a peak in 2012 (1600 fish/100m2) before

decreasing in 2013 (905 fish/100m2) followed by a recovery in 2014 (1363

fish/100m2). After 2014 there is a sharp decline in the cumulative density of

Atlantic Salmon fry reaching 280 fish/100m2 in 2017, with a low point in 2020

(74 fish/100m2) (Figure 12c).

Page 31: An ecohydrological investigation into the relationship

22

3.2.2. Cumulative Density of Brown Trout fry

There is also a clear decrease in the cumulative density of Brown Trout fry in

the Ribble (Figure 13a), showing a peak in 2012 (2703 fish/100m2), before a

declining to a cumulative density of 877 fish/100m2 in 2015. This is followed by

an increase in 2016 (1315 fish/100m2) and 2017 (1479 fish/100m2) (Figure

13a), before a low point is reached in 2019 (154 fish/100m2).

The Calder also shows a clear decrease in the cumulative density of Brown

Trout fry (Figure 13b). The Calder shows similar levels between 2009 and 2011

before experiencing a sharp increase and peaking in 2012 (2565 fish/100m2)

(Figure 13b). Following this peak, the cumulative density of Brown Trout in the

0

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Figure 12: Cumulative density (fish/1002) of Atlantic Salmon fry in the: (a) Ribble; (b) Calder; (c) Hodder (2009-2020).

Page 32: An ecohydrological investigation into the relationship

23

Calder decreases in 2013 (1600 fish/100m2) before increasing slightly in 2014

(1728 fish/100m2). There is a sharp decrease in 2016 (364 fish/100m2), which

is then followed by a sharp increase over a 2-year period to 1718 fish/100m2 in

2018 (Figure 13a). Following the 2018 high point, the Calder experiences a

large crash in the cumulative density of Brown Trout fry in 2019 (149

fish/100m2) and shows no sign of recovering in 2020 (143 fish/100m2) (Figure

13a).

The cumulative density of Brown Trout fry in the Hodder (Figure 13c) is

relatively similar in 2009 and 2010 (1159 fish/100m2 and 938 fish/100m2). A

sharp increase occurs in 2011 (3877 fish/100m2) and following this the

cumulative density of Brown Trout fry experiences several decreases, with the

largest decline occurring between 2012 and 2013 (3550 fish/100m2 to 1799

fish/100m2). Both 2019 and 2020 are poor years, with the lowest point in the

data occurring in 2020 (132 fish/100m2) (Figure 13c).

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Figure 13: Cumulative density (fish/100m2) of Brown Trout fry in the: (a) Ribble; (b) Calder; (c) Hodder (2009-2020).

Page 33: An ecohydrological investigation into the relationship

24

3.3. Rod Catch Data

Rod catch data for Atlantic Salmon (Figure 14) and Brown Trout (Figure 15)

shows that, there appears to be ‘good’ and ‘bad’ years for both species. The

number of Atlantic Salmon caught peaks in 2004 (1442) while the number of

Brown Trout caught peaks in 2011 (1838). The number of Atlantic Salmon

caught is lowest in 1997 (348) and the number of Brown Trout caught is lowest

in 2018 (487). Relatively similar low recordings of Atlantic Salmon were

recorded in 2018 (370) and 2019 (380). Between 1996 and 2019, a total of 12

years fall below the average number of Atlantic Salmon caught in the Ribble

system (804 per year) and a total of 11 years exceed the average of this period

(Figure 14). Despite the ‘good’ and ‘bad’ periods, statistically the number of

Atlantic Salmon being caught is relatively stable over the period between 1996

and 2019 (R2= 0.04).

Between 1996 and 2019, a total of 14 years exceed the average number of

Brown Trout caught in the Ribble (1221 per year) and a total of 9 years fall

below this average, including the last 3 years (Figure 15). Statistically, the

number of Brown Trout caught per year appears to have been relatively stable

in the period between 1996 and 2019 (R2 =0.01). Data from the EA regarding

the number of Rod licenses sold within Lancashire and Cumbria between 2010

and 2018, show a sharp decline from 58,479 in 2010 to 31,874 in 2018, a

decrease of 26,605 (-45.5%) in just 8 years (Figure 16).

0

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YearFigure 14: Total declared rod catch of Atlantic Salmon in the Ribble (1996-2019) (Environment Agency, 2020)

Page 34: An ecohydrological investigation into the relationship

25

3.4. Waddow Fish Counter Data

The number of fish movements upstream (Figure 17a) shows a peak in 1999,

(7447 upstream movements recorded) and a low point in 2017 (2268 upstream

movements recorded) (Figure 17a). However, between the period of 1996-

2019, the number of upstream fish movements has remained relatively stable

over time (R2 =0.15).

The downstream movements of fish recorded at Waddow weir (Figure 17b)

shows a peak in 1996 (2858 downstream movements recorded). A low point of

downstream fish movements was recorded in 2018, (183 downstream

0200400600800

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Figure 15: Total declared rod catch of Brown Trout in the Ribble (1996-2019) (Environment Agency, 2020).

0

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Figure 16: Number of rod licenses sold in Lancashire and Cumbria (2010-2018) (Environment Agency, 2015).

Page 35: An ecohydrological investigation into the relationship

26

movements) (Figure 17b). Downstream movements again appear to have

remained relatively stable over the period between 1996 and 2019 (R2 = 0.27).

3.5. Analysis of Flow and Salmonids

Table 3 shows the correlations between median monthly flow and the

cumulative density of both Atlantic Salmon and Brown Trout fry in the Ribble,

Calder and Hodder. March median flow shows a strong negative correlation

with the cumulative density of both Atlantic Salmon fry and Brown Trout fry in

each of the Ribble, Calder and Hodder (Table 3).

The strongest relationship between median flow and the cumulative density of

Brown Tout is seen in the Ribble (Figure 18a), which displays a statistically

significant negative correlation between cumulative density and March median

flow (r (9) = -0.73, p <0.05). The Calder (Figure 18b) and Hodder (Figure 18c)

also display statistically significant negative correlations between cumulative

density and March median flows (r (9) = -0.61, p <0.05 and r (9) = 0.65, p <0.05).

Positive correlations between October Median flow and the cumulative density

of Atlantic Salmon and Brown Trout are also shown in Table 3, although the

only statistically significant relationship is shown with Brown Trout in the Calder

(r (9) = 0.64, p<0.05).

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Figure 17: Number of fish counted moving (a) upstream and (b) downstream at Waddow weir fish counter (1996-2019) (The Ribble Rivers Trust).

Page 36: An ecohydrological investigation into the relationship

27

Figure 19 shows the relationship between cumulative density of Atlantic Salmon

fry and March median flows. The strongest relationship is seen in the Calder

(Figure 19b), which displays a statistically significant negative correlation

between the cumulative density of Atlantic Salmon and March median flows (r

(9) = -0.77, p <0.05). The Ribble (Figure 19a) also displays a negative

correlation between cumulative density and March median flow, which is also

statistically significant (r (9) = -0.64, p <0.05). The Hodder (Figure 19c) also

shows a negative correlation between cumulative density and March median

flow; however, it is not statistically different (r (9) = -0.48, p >0.05).

Monthly

Median flow

Ribble Calder Hodder

Trout Salmon Trout Salmon Trout Salmon

Jan -0.13 -0.05 0.11 -0.39 0.11 0.15

Feb 0.05 -0.07 0.21 -0.23 0.28 0.22

Mar -0.73 -0.64 -0.61 -0.77 -0.65 -0.48

Apr 0.06 0.11 0.30 -0.18 -0.15 -0.22

May 0.36 0.28 0.32 0.26 0.50 0.37

Jun -0.07 -0.26 -0.26 -0.42 0.04 0.06

Jul 0.61 0.39 -0.24 0.08 0.30 0.24

Aug -0.09 -0.31 -0.33 -0.26 0.11 0.11

Sep 0.18 0.21 -0.02 0.28 -0.04 0.10

Oct 0.48 0.53 0.64 0.52 0.36 0.45

Nov -0.05 -0.07 -0.06 0.09 0.05 -0.16

Dec 0.01 -0.15 -0.05 -0.33 -0.15 -0.03

Table 3: Spearman correlation matrix of median monthly flow (m3s-1) and cumulative density (fish/100m2) of Atlantic Salmon and Brown Trout Fry for the Ribble, Calder and Hodder.

Page 37: An ecohydrological investigation into the relationship

28

0

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Figure 18: Relationship between March median monthly flow (m3s-1) and the cumulative density of Brown Trout fry (Fish/100m2) for (a) Ribble, (b) Calder and (c) Hodder (2009-2019).

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Figure 19: Relationship between March median monthly flow (m3s-1) and the cumulative density of Atlantic Salmon fry (Fish/100m2) for (a) Ribble, (b) Calder and (c) Hodder (2009-2019).

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3.6. Atmospheric temperature and Salmonids

Table 4 shows that there is a relationship between mean winter temperature

and the cumulative density of Atlantic Salmon and Brown Trout. Atlantic Salmon

show a stronger relationship with mean winter temperature in comparison to

Brown Trout. The negative correlation is strongest in the Calder (Table 4) and

is statistically significant (r (9) = -0.68, p < 0.05). The Ribble also shows a

statistically significant correlation between mean December temperature and

the cumulative density of Atlantic Salmon (r (9) = -0.62, p < 0.05). The Hodder

shows a negative correlation; however, this is not statistically significant (r (9)

= -0.42, p > 0.05).

There is no statistically significant correlation between mean December

temperature and the cumulative density of Brown Trout fry (Table 4). It is clear

that the correlation between mean winter temperature and the cumulative

density of Atlantic Salmon in the Ribble and Calder is due mainly to mean

December and January temperatures (Table 4).

It is worth noting that the Hodder also displays statistically significant negative

correlations between mean June temperature and the cumulative density of

both Atlantic Salmon fry and Brown Trout fry (r (9) = -0.69, p < 0.05 and r (9) =

-0.65, p < 0.05).

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4. Discussion

4.1. Hydrological Data In the 11 years since 2009, the Ribble has experienced 8 years above the long

term median annual flow (72.7%), the Calder has experienced 6 years above

the long term median annual flow (54.5%) and the Hodder 9 of the last 11 years

(81.8%). A possible reason for the increase in annual flow of these Rivers is

anthropogenically driven climate change (Gudmundsson et al., 2021) as

climate change is expected to intensify the hydrological cycle and result in

modified river flow regimes (Huntington, 2006; Hannaford, 2015). With

anthropogenic driven climate change we are seeing more extreme weather

patterns, including increased probability of high intensity rainfall events as well

as prolonged dry periods (IPCC, 2014; The River Ribble Trust, 2020).

This is evident by the fact that 2009-2018 was 1% wetter than 1981-2010 and

5% wetter than 1961-1990 for the UK overall (Met Office, 2021). Also, between

Ribble Calder Hodder

Mean Air Temperature (°c)

Trout Salmon Trout Salmon Trout Salmon

Winter -0.51 -0.61 -0.26 -0.70 -0.43 -0.29

Spring 0.09 0.05 -0.06 -0.08 0.08 0.17

Summer -0.26 -0.44 -0.02 -0.30 -0.53 -0.37

Autumn 0.06 -0.06 -0.09 -0.13 0.35 0.11

Annual -0.36 -0.33 -0.11 -0.52 -0.13 -0.11

January -0.27 -0.29 0.16 -0.45 -0.24 -0.16

February -0.19 -0.36 -0.40 -0.45 0.01 0.09

March 0.11 0.08 -0.05 -0.05 0.12 0.31

April -0.08 0.09 -0.08 -0.07 0.02 0.25

May -0.16 -0.16 -0.06 -0.31 -0.28 -0.33

June -0.43 -0.33 -0.22 -0.32 -0.69 -0.65

July -0.25 -0.32 0.11 -0.13 -0.41 -0.26

August -0.14 -0.43 -0.31 -0.30 -0.35 -0.27

September -0.09 -0.13 -0.23 -0.14 0.02 0.13

October 0.21 0.11 -0.03 0.00 0.42 -0.05

November 0.07 0.16 0.22 -0.05 0.36 0.24

December -0.56 -0.62 -0.25 -0.68 -0.26 -0.48

Table 4: Spearman correlation matrix of mean air temperature (°c) and cumulative density of Brown Trout and Atlantic Salmon (2009-2019).

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32

2009-2018 winters in the UK have been 5% wetter when compared to the

period 1981-2010 and 12% wetter than 1961-1990 (Met Office, 2021). This

trend is also reflected in UK summer precipitation, which has been 11% and

13% higher respectively for each period (Met Office, 2021). This data from the

Met Office clearly illustrates reasons why the median annual flow of the Ribble,

Calder and Hodder have increased, as shown by the analysis of NRFA data in

Figures 7, 8 and 9.

Analysis of the long term NRFA daily flow data using the Indicators of

Hydrologic Alteration Parameter 1 (Figure 10), shows that The Ribble and

Hodder both show a dominant peak in January, whilst the Calder has a much

less clear peak, as December and January are very similar. These flow regimes

are typical of UK rivers, showing a peak in flow in December and January,

before decreasing in Spring with lowest points occurring in summer (Gray,

2015).

However, when comparing the median monthly flows for the period between

2009 and 2019 (Figure 11) with long term median monthly flows (Figure 10) it

is clear that winter flows have increased, particularly December median flows

in the Ribble, Calder and Hodder. This further highlights that the UK is

experiencing increased winter precipitation due to climate change and therefore

increased river flow (Huntington, 2006; IPPC, 2014 Hannaford, 2015,

Gudmundsson et al., 2021, Met Office, 2021).

4.2. Salmonid Data

It is clear that the number of Atlantic Salmon and Brown Trout in the Ribble,

Calder and Hodder have experienced a decline in the period since The Ribble

Rivers Trust began carrying out electrofishing surveys. The cumulative

densities of both Atlantic Salmon fry and Brown Trout fry have decreased

dramatically in the period between 2009 and 2019 (Figure 12 and Figure 13). It

is worth noting that the UK as a whole experienced a strong recruitment ‘crash’

in 2016 (ICES, 2017; Marsh, 2020), so the trends shown in Figures 12 and 13

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also reflect national trends and not just the recruitment trends experienced in

the Ribble system.

4.2.1. Rod Catch and Fish Counter

This decrease in cumulative density of fry for both Salmonid species has

occurred despite the rod catch data between 1996 and 2019 showing the

number of Atlantic Salmon (Figure 14) and Brown Trout (Figure 15) caught

have remained stable over time (R2= 0.04 and R2= 0.01) despite experiencing

‘good’ and ‘bad’ years when compared to the long-term average. However, it is

worth considering that both the Atlantic Salmon and Brown Trout have

experienced several ‘bad’ years in recent years (2012-2019 and 2017-2019),

which is likely having some effect on the number of Salmonid fry, although no

statistically significant relationships were detected from the data available.

The rod catch for both species has remained stable despite the number of rod

licenses dropping drastically by 45.4% in an 8-year period (Figure 16), although

caution is needed when assessing this, as rod licence data is for Lancashire

and Cumbria, and not solely for the Ribble catchment. Fish counter data from

Waddow weir (Figure 17) also indicates that the number of fish returning

(travelling upstream) to spawn has remained relatively constant between 1996

and 2019 (R2= 0.15). These factors suggests that the cause of decreasing

salmonid fry in the Ribble, Calder and Hodder is not due to a decrease in adults

returning to spawn.

4.2.2. Juvenile Salmonids and Median Monthly Flow

When the cumulative density of Atlantic Salmon and Brown Trout fry were

analysed in relation to median monthly flow conditions several correlations were

found (Table 3). Statistically significant negative correlations were found

between March median flows and the cumulative density of Atlantic Salmon fry

and Brown Trout fry in the Ribble and Calder, but only for Brown Trout in the

Hodder (Figure 18 and Figure 19).

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March flows are likely to coincide with the emergence phase of Salmonids from

their eggs, thus meaning that higher March flows are more likely to transport

Alevins out of the Redd and downstream into less favourable conditions,

potentially resulting in mortality (Crisp, 1999; Warren et al., 2015). Depending

on the timing of the increased flows, eggs may also experience wash out from

the Redd, again increasing the chance of mortality. This can occur either

through physical shock and damage to egg, predation, or the egg being

deposited in an inhospitable downstream environment (Jensen and Johnsen,

1999; Cowx and Fraser, 2003; Gray, 2015). These factors explain why there is

a statistically significant negative correlation between March median flows and

the cumulative density of Salmonid fry, as intra-gravel life stages are most

susceptible to high flow events (Nislow and Armstrong, 2012; Gillson et al.,

2020).

As Alevins grow and become fry their swimming ability and size increases,

meaning the likelihood of them being able to survive high flow events also

increases, (Heggenes, 1990; Hendry and Cragg-Hine, 2000). This reduces the

chance of mortality caused directly by high flow events and explains why the

correlation between median monthly flows and cumulative density of Salmonid

fry are not significant in later months (Table 3). So higher median flows in March

result in an increased probability of mortality for intra-gravel stages and result

in lower cumulative densities of Salmonid fry in the summer.

High flows in March will also affect the growth of juvenile Salmonids, as the

higher flows reduce the abundance of food available to the juveniles (The

Ribble Rivers Trust, 2018). In comparison, lower median flows increase the

likelihood of survival and potentially explain why higher cumulative densities of

Salmonid fry are found in summers following lower March flows. These findings

are supported by the growing body of evidence that suggests high discharge

events between spawning and fry emergence have a significant effect on

juvenile Salmonid densities (Malcolm et al., 2012; Gillson et al., 2020; Bergerot

and Cattaneo, 2017).

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Although, a statistically significant positive correlation was found between

October Median flows and Brown Trout cumulative density in the Calder, all of

the Ribble, Calder and Hodder displayed positive correlations between both

Salmonid species and October median flow (Table 3). These positive

correlations can be explained by fact that high flows enable earlier access to

rivers for Salmonids (Jonsson et al., 2007; Parry et al., 2018; Gillson et al.,

2020). This allows the Salmonids to travel further upstream and disperse their

eggs in a more even manner throughout the catchment (Einum et al., 2008;

Gillson et al., 2020). In turn, this can increase the growth size and survival

chances of juvenile Salmonids through the reduction of intra-specific

competition relating to territory and food (Gillson et al., 2020).

Brown Trout have more plastic life histories, compared to Atlantic Salmon

(Klementsen et al., 2003) and the proportion of Brown Trout fry which are

offspring from fresh-water resident parents is also unknown. This may impact

the relationship between October median flow and cumulative density, as they

do not require high discharge to access spawning areas (Gillson et al., 2020).

Also, Brown Trout typically bury their eggs at shallower depths when compared

to Atlantic Salmon (De Vries, 1997), making them more susceptible to washout,

and damage or entrapment by sediment during high flow events (Crisp, 1996;

Gillson et al., 2020). Brown Trout are also more at risk to wash out and

displacement during high flow events when compared to Atlantic Salmon, due

to their smaller pectoral fins (Arnold et al., 1991; Gillson et al., 2020).

The low cumulative densities of Salmonids in 2019 and 2020 can be linked to

the number and timing of named storms occurring in February and March. In

2019, storms Freya, Gareth, and Hannah, had resulted in twice the expected

monthly rainfall (The Ribble Rivers Trust, 2020). This period of exceptionally

high rainfall coincided with Fry beginning to emerge from the Redd to feed (The

Ribble Rivers Trust) and high flows occurring within this period will have likely

resulted in high levels of egg and fry mortality (Jensen and Johnsen, 1999).

The low cumulative densities of Salmonids in 2020 can also be linked to timing

of storms, with storms Ciara, Dennis and Jorge occurring in February (The

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36

Ribble Rivers Trust, 2020). February is a period when Salmonid fry are still

feeding on their yolk-sacs and have limited swimming ability and are still in their

Redds (ICES, 2017; Marsh, 2020; The Ribble Rivers Trust, 2020). The high

rainfall in both 2019 and 2020 resulted in high flows and will have resulted in

increased movement of larger sediment, causing the wash out of Redds and

therefore mortality (The Ribble Rivers Trust, 2020). The combination of the

factors outlined above, explains the low cumulative density of Salmonids seen

in both 2019 and 2020.

4.2.3. Salmonids and Atmospheric Temperature

Another reason which may explain the reduction in the cumulative density of

Salmonids is the correlation with mean air temperature (Table 4). The

incubation period of eggs is directly dependent on water temperature (Hendry

and Cragg-Hine, 2000), lasting 145 days at 3°c and around 40 days at 10-12°c

(Drummond and Segwick, 1982; Hendry and Cragg-Hine, 2000). The

correlations between mean December, January and winter temperature and

cumulative density of Atlantic Salmon and Brown Trout can be explained by the

correlation between cold winters and egg survival (Crisp, 1999). Colder winters

increase the probability of eggs succumbing to freezing and desiccation (Crisp,

1999). This explains why lower winter temperatures correlate with lower

cumulative densities of Salmonid fry in the summer, as colder temperatures

increase the risk of mortality during the incubation period.

Research has suggested that the 2016 recruitment crash of Salmonids is due

to the combination of an unusually warm and wet winter followed by a wet spring

(Marsh, 2020). The warm winter resulted in unfavorable conditions for spawning

(ICES, 2017; Gregory et al., 2019; Game and Wildlife Conservation Trust,

2019) and the eggs that were spawned and hatched experienced large spring

floods (Gregory et al., 2019). The combination of these conditions resulted in

high egg and Alevin mortality in 2016 across England and Wales (Gregory et

al., 2019; ICES, 2017; Game and Wildlife Conservation Trust, 2020; Marsh,

2020).

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37

4.3. Future Climate Scenarios

As future climate change scenarios show that the UK is set to experience wetter

winters, with reduced rainfall in the summer months (IPCC, 2014) it is likely that

Salmonids are going to feel the impacts of these anthropogenically driven

changes in climate. There are also indications that the UK may experience up

to 30% more precipitation in the winter by 2100 (Met Office, 2019), so

Salmonids across the UK and within the Ribble system are going to be affected

by winter high flow events more frequently in the future.

With these projections, it is clear that Salmonids in the Ribble are going to

continue to come under pressure due to anthropogenic driven climate change.

Despite the fact that Salmonids have evolved to deal with temporal variations

in flow, it is evident that the increasing rate of environmental change is

exceeding their ability and capacity as a population to adapt to new flow regime

conditions (The Ribble Rivers Trust, 2020), which is shown by the year-on-year

reductions of Salmonid fry in the Ribble, Calder and Hodder in recent years.

4.4. Management Solutions

It is clear that some form of management is needed in order to help the numbers

of Atlantic Salmon and Brown Trout in the Ribble system. The NFCS maps

(Appendix A and Appendix B) can be used to determine which sites within the

Ribble, Calder and Hodder have seen the largest reduction in NFCS grade for

Atlantic Salmon and Trout in recent years. This analysis can be used to help

inform the decision-making process for management solutions, in relation to

juvenile Atlantic Salmon and Brown Trout numbers in the Ribble system.

Further research could be undertaken at sites to determine if any other factors,

such as sediment composition and water temperature are having an impact on

juvenile numbers.

Potential management solutions for mitigating the impact of high flows in the

Ribble system could include Nature Based Solutions (NBS) and Natural Flood

Management (NFM). NFM uses natural hydrological processes to slow water

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38

flowing through the landscape (Wingfield et al., 2019). This concept could be

used to target certain areas within the Ribble system, with the aim of increasing

the time it takes for water to enter the system and potentially reduce the

likelihood of large flows. In turn this would benefit juvenile Salmonids and help

reduce the likelihood of wash out events occurring.

NFM techniques aim to reduce flow by intervening at each stage of the

hydrological cycle by increasing interception, infiltration, water storage and

channel flow (Wingfield et al., 2019). These concepts can be used at various

scales and are suitable for different budgets. Techniques which could be utilised

in the Ribble system in order to reduce flow include interception ponds;

restoring peatlands; planting new woodland; creating buffer strips; encouraging

farmers to reduce tilling and the creation of wetland areas (Wingfield et al.,

2019). These techniques have been proven to reduce flow and would therefore

likely help mitigate the impact of high flows on juvenile Salmonids.

5. Conclusion

The cumulative densities of Atlantic Salmon fry and Brown Trout fry have

declined since 2009, with 2019 and 2020 showing some of the lowest levels in

the 11-year period. There is also a noticeable drop in the cumulative density of

both species in 2016, which coincides with a wider crash in recruitment of

Salmonids seen within many UK rivers. These trends have occurred despite

rod catch data and data from a fish counter located in the Ribble system

indicating that there has been no significant change in the number of Salmonids

returning to spawn in the Ribble system, despite the presence of good and bad

years in comparison to long term averages. This suggests that the cause of the

decline is due to in river factors.

The flow regime of the Ribble, Calder and Hodder all show an increased peak

in median monthly flow in December between 2009 and 2019 when compared

to their long term median monthly flows. The Ribble, Calder and Hodder have

also experienced several ‘wet’ years since 2009. The Ribble has experienced

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39

8 years above the long term annual median flow since 2009, whilst the Calder

and Hodder have experienced 6 years and 9 years above the long term annual

median flow since 2009 also. This demonstrates that the Ribble system is

experiencing much higher annual median flows in recent years when compared

to the long term annual median flow of each river.

This increase in annual median flow and the increased peaks in median

monthly flow can likely be explained by anthropogenic driven climate change,

resulting in wetter winters and higher intensity rainfall in the summer months.

The increase in winter precipitation and therefore flow, will increase the

probability of mortality occurring during the intra-gravel life stages of Salmonids

as they are at most risk from high flows during these life stages, due to their

small size and limited swimming ability.

This idea is reinforced, by the statistically significant negative correlations found

between March median flow and the cumulative density of both Atlantic Salmon

fry and Brown Trout fry. Higher March median flows resulted in lower

cumulative densities of Salmonid fry in the Ribble, Calder and Hodder and lower

March median flows resulted in higher cumulative densities of Salmonids. This

is due to the emergence phase of Salmonids occurring in March, meaning that

the Alevins are feeding on their yolk-sac within the gravel Redds and so are

very susceptible to wash out during high flow events. The increase in March

median flows in 2019 and 2020 and the decrease in cumulative densities of

Salmonids can be attributed to the number of named storms occurring during

this period in both years.

Another reason for the possible decline in the recruitment of Salmonids in the

Ribble system is temperature. Negative correlations were observed between

mean winter temperature and the cumulative density of Salmonids, as cold

winter temperatures have been found to correlate with egg survival. Colder

temperatures increase the risk of mortality during the incubation period.

The results of this research show that there is a clear need for further research

into the impact of changing river flow regime on juvenile Salmonids in the Ribble

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and its sub-catchments. Although this study primarily focused on flow regime

with some emphasis placed on temperature, it is clear that due to their complex

life histories, further research is needed into the impacts of other factors, such

as water temperature and water pollution in the Ribble system. There is also

potential for the use of Natural Flood Management techniques in order to

reduce the impact of high flow events on juvenile Salmonids. However, further

research is needed in order to target viable areas of the Ribble system for these

techniques to be implemented.

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41

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Appendices

Appendix A: NFCS Trout fry Classifications (2009-2020)

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Appendix B: NFCS Salmon Fry Classifications (2009-2020).

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Appendix C: Data used for Dissertation

Dissertation_Data.zi

p

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Record of Meetings

Date Type of Meeting Key points discussed 16/02/21

Teams meeting Discussed the background of the

project. Talked about potential data

sets that could be used. Discussed

directions that I could take the

research.

22/02/21

Teams meeting Meeting with Dr. Thea Wingfield.

Discussed aims and objectives of the

project and methodology. Information

and discussion helped to frame ideas

ready for the dissertation proposal and

presentation.

23/02/21 Email Dr. Thea Wingfield emailed to tell me

about a webinar from CIWEM which

may be of use for my research

04/03/21

Teams meeting Meeting with Dr. Thea Wingfiled and

Mike Forty from The Ribble Rivers

Trust. I gave a presentation on my

project aims and the IHA software.

Mike Forty gave me guidance on the

directions my research could take. He

also gave me an insight into the Ribble

catchment.

05/03/21 Email Dr. Thea Wingfiled emailed the folder

containing the data that she had been

sent by Mike Forty from The Ribble

Rivers Trust.

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76

15/03/21

Teams meeting Meeting with Dr. Thea Wingfiled.

Discussed about the potential of using

fish counter data as a proxy and spoke

about how the data had not been

looked into. Potentially important in

regard to the work done by The Ribble

Rivers Trust. Spoke in greater detail

about the IHA method and graphs.

19/04/21 Email Dr. Thea Wingfiled emailed to check in

on my progress and asked if I wanted

to have a meeting or wait until later on

in the month.

02/06/21 Email I emailed Dr. Thea Wingfield to ask

advice in relation to site selection

methods.

14/06/21 Email Dr. Thea Wingfield emailed over the

Fish counter data from Mike Forty at

The Ribble Rivers Trust.

18/06/21 Email Received an email to say that Dr.

Thea Wingfield would no longer be my

supervisor and that Professor Neil

Macdonald would be taking over as

my new supervisor.

28/07/21

Teams meeting Results meeting with Professor Neil

Macdonald and Dr. Thea Wingfield.

Gave a short PowerPoint presentation

on the results of my research.

Discussed other areas, such as

temperature, pollution and stocking

that should be looked into further. This

also acted as a ‘handover’ meeting as

Professor Neil Macdonald became my

dissertation supervisor.

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31/08/21

Teams meeting Meeting with Professor Neil

Macdonald. Discussed where I was up

to with my write up. Discussed what

sections certain information should go

in.