heka electrophysiology update · 2020. 4. 7. · slide 2 2/18/2015 measuring cm and ra parameters...
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HEKA Electrophysiology UpdateRa/Rs, Rm and Cm measurements
Telly GaliatsatosGeneral Manager HEKA instruments Inc.
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Overview
Slide 2
2/18/2015
Measuring Cm and Ra parameters during voltage clamp experiments is important to determine the integrity of your recording.
In whole cell voltage clamp:
• Cm values are often used to normalize whole-cell currents• Ra values, when too high, can lead to voltage errors and distorted
currents
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EPC 10
Slide 3
2/18/2015
• zero the current signal (pipette offset)
Typical voltage clamp recording
• optimize the electrode (or stray) capacitance compensation on the amplifier (C-fast) following Giga Ohm seal formation
• optimize C-slow compensation - the capacitive transients are completely compensated
• start an acquisition – i.e. IV • monitor R-membrane, R-Series
and Membrane capacitance after each series
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Discussion
Slide 4
2/18/2015
• How to measure these parameters with an EPC 10 USB.
• How to measure these parameters with a classical amplifier.
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EPC 10
Slide 5
2/18/2015
A background process is running, updating I-mon, V-mon and R-membrane at all times.R-membrane is computed in one of two Ways:
Rmemb
Rmemb
• With test pulse: determined from the current sampled during the baseline and the second half of the Test Pulse.
• In-between sweep / series acquisition: by using the pipette current only.
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EPC 10
Slide 6
2/18/2015
Cm and R-Series are measured by selecting Auto C-slow, which performs an automatic compensation of C-slow and R-series.
This procedure does the following:• applies short trains of square-wave
pulses (number and amplitude of these pulses can be specified)
• averages the resulting currents• fits an exponential to deduce the
compensation values required to cancel the current
Further information can be found in: Sigworth FJ, Affolter H, Neher E(1995). Design of the EPC-9, a computer-controlled patch-clamp amplifier.2. Software. J Neuroscience Methods 56, 203-215.
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EPC 10
Slide 7
2/18/2015
Testing with the model cell
• Provides three positions for simulating:• “open” pipette with a resistance of 10 MΩ• a pipette attached to the cell membrane after the Giga-Ohm
seal formation ~6 pF capacitance• whole cell patch-clamp configuration
• access resistance ~ 5.1MΩ• Membrane resistance ~ 500 MΩ• Membrane capacitance ~22 pF
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EPC 10
Slide 8
2/18/2015
• Switch model cell to 10M position to simulate a 10 MΩ pipette open to the bath solution
• Click on the SETUP protocol• Reset the EPC 10USB• Set recording mode to “Whole Cell”• Change Gain to 5.0 mV/pA• Apply a 5 ms 5 mV test pulse• Perform an auto-zero to cancel any voltage
offset
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EPC 10
Slide 9
2/18/2015
ResultRectangular current of ~500 pA (I =U/R = 5 mV/10 MΩ)R-membrane ~ 10 MΩ
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EPC 10
Slide 10
2/18/2015
• Switch model cell to middle position to simulate a pipette attached to the cell membrane after the Giga-seal formation
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EPC 10
Slide 11
2/18/2015
• Click on the SEAL protocol• Set recording mode to “Whole Cell”• Change Gain to 20 mV/pA• Perform an auto C-fast to cancel any “fast
capacitance” transients
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EPC 10
Slide 12
2/18/2015
ResultFast transients are neutralized
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EPC 10
Slide 13
2/18/2015
• Switch model cell to 0.5G position to simulate a “model cell”
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EPC 10
Slide 14
2/18/2015
• Click on the WHOLE-CELL protocol• Set recording mode to “Whole Cell”• Change Gain to 10 mV/pA• Set initial C-Slow value to 50 pF• Set initial R-Series value to 20 MΩ• Perform an auto C-Slow to cancel
capacitance transients
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EPC 10
Slide 15
2/18/2015
ResultCapacitance transients are neutralizedRectangular current ~ 10 pA R-membrane ~ 500 MΩC-slow (Cm) = 21.82 pF R-series = 5.1 MΩ
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EPC 10
Slide 16
2/18/2015
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Classic amplifier
Slide 17
2/18/2015
• perform an auto-zero• optimize the electrode (or stray) capacitance compensation on
the amplifier (C-fast) following Giga Ohm seal formation • optimize C-slow compensation - when the capacitive transients
are completely compensated
Note: optimizing the capacitance compensation is extremely important for the accuracy of the Cm measurement
Typical recording with membrane test
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Classic amplifier
Slide 18
2/18/2015
• disable C-slow and series resistance compensation• set the lowpass filter to 3 kHz (medium bandwidth)• execute membrane test protocol to measure Rm, Cm and RS
Additional steps for using membrane test protocol
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Membrane Test
Slide 19
2/18/2015
Q1 = Integral (above I1)∆V = V1 – V2∆I = ∆V / (Ra + Rm)Q2 = ∆I * tauQt = Q1 + Q2Rt = ∆V / ∆IRa = tau * ∆V / QtRm = Rt - RaCm = Qt * Rt / (∆V * Rm)
V1
V2
Required formulas
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PGF
Slide 20
2/18/2015
Three segment pulse
log(|I_mon|) - to confirm that the decay is single exponentail
• 5 μs sampling (200 kHz)• Pulse segment #2 uses
parameters P1 for duration and P2 for amplitude to be able to change the pulse width / amplitude automatically
• Record voltage, current response and virtual trace
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Analysis
Slide 21
2/18/2015
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Analysis
Slide 22
2/18/2015
V1 - amplitude of pulsed segment
Standard functions
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Analysis
Slide 23
2/18/2015
V2 - amplitude of segment before pulse
Standard functions
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Analysis
Slide 24
2/18/2015
∆t - duration of pulsed segment
Standard functions
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Analysis
Slide 25
2/18/2015
I1 - mean (80-100%) of pulsed segment
Standard functions
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Analysis
Slide 26
2/18/2015
I2 - mean (50-100%) of segment before pulse
Standard functions
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Analysis
Slide 27
2/18/2015
Max_t - time of peak current
Standard functions
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Analysis
Slide 28
2/18/2015
Tau - cursors 1%-15% after time of peak
Standard functions
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Analysis
Slide 29
2/18/2015
Q1 - Integral of segment
Standard functions
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Analysis
Slide 30
2/18/2015
∆V = V1 - V2
Equations
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Analysis
Slide 31
2/18/2015
Equations
∆I = I1 - I2
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Analysis
Slide 32
2/18/2015
Equations
Qt = Q1 - (∆I* ∆t) + (∆I * tau)
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Analysis
Slide 33
2/18/2015
Equations
Rt = ∆V / ∆ I
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Analysis
Slide 34
2/18/2015
Equations
Ra = tau * ∆V / Qt
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Analysis
Slide 35
2/18/2015
Equations
Rm = Rt – Ra
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Analysis
Slide 36
2/18/2015
Equations
Rm = Rt – Ra
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Analysis
Slide 37
2/18/2015
Equations
Cm = Qt * Rt / (∆V * Rm)
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Analysis
Slide 38
2/18/2015
For estimation of optimal pulse length:
DownLevel (I_Max-I1)*0.2+I1: calculate the level at which current has decayed to 20%.
Equations
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Analysis
Slide 39
2/18/2015
Equations
t_Thresh: time of crossing the Down Level, result is stored in value-2.
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Results
Slide 40
2/18/2015
Black: current traceRed: voltage traceBlue: log(|current trace|)Cursor range 1%-15% of pulse length, starting at I_max