serine protease, a basis of immunity through evolution
TRANSCRIPT
Serine Proteases, A Basis of Immunity Through Evolution
Master Thesis ProjectBy Luke Morton
Lars Hellman Lab
Serine Proteases? Prolific Throughout Biological systems
Granulocytes
Granulocyte Proteases
Granulocyte Proteases
Protease Specificity By Family
The S1 Pocket of the protease conveys an aspect of the cleavage specificity, also dictating the P1 position nomenclature.
MrBayes MCMC (Markov Chain Monte Carlo) Bioinformatic association map based on sequence homology and surrounding genes, indicating likely protease specificities from various species.
Loci for Chicken Cathepsin G & Chinese Alligator Mast Cell
Protease-1
“[Serine Proteases] evolved in parallel with the immune cells in which they are now expressed; thus, […] variations open a window onto the origins and development of mammalian immune cells in their current state of complexity and specialization.” Caughey 2006
Quantification of Insert & Vector
Transfection into HEK 293
Major changes from previous pCEP4 vector:
• Introduction of puromycin resistance versus the previous hygromycin.
• Signal sequence from human BM40
• EcoRI sites upstream of the ampicilin resistance gene moved after extension of a polylinker to also include a NotI site
EBNA-1: Ebstein-Barr virus nuclear antigen 1, responsible for keeping cell in an altered state utilizing viral proteins to take advantage of cellular machinery (SV40).Col E1: Copy number regulation system designed to reduce plasmid expression collapse. P CMV: Cytomeglovirus promoterOri P: origin of replication.
Expression & Harvesting
•Once the vector has been selected for in the HEK 293 cells, they are grown and expanded, producing variable quantities of protein into the media, which is then collected and purified using Ni-NTA beads.
•SDS-PAGE shows the qualitative concentrations of the elutions done with imidazole.
Quantification of ProteaseChicken CTSG High ElutionDilution Factor X-values (OD) Y-Values (eq) Y-valuesxDF Avg Conc.5x 0,04 0,1095 0,54752x 0,092 0,2703 0,5406 0,5ug/ul1x 0,153 0,5459 0,5459
Low Elution5x 0,019 0,0534 0,2672x 0,046 0,1261 0,2522 0,2ug/ul1x 0,07 0,1968 0,1968
Alligator MCP-15x 0,025 0,0699 0,34952x 0,06 0,1663 0,3326 0,3ug/ul1x 0,072 0,203 0,203
Comparative quantification of the protease concentration is done through:
• Bradford Standard Assay
• Bovine Serum Albumin Dilution Assay
(eq) y=50.724x3-1.8662x2+2.6431x+0.0035
Activation of CTSG & MCP-1
EFHHHHHDDDDKIVGGRRARPHAWPFMVSLQLRGGHFCGSTLIAPNFVMSAAHCCVANVNVRAVRVVLGAHNLSRREPTRQV…
•Imitates zymogen cleavage of proteases in natural system.
•Found also in compliment activation, fibrinogen and kinin systems.
•Removes small protein flap from active site , allowing interaction.
Recombinant substrate assays
V2:VVRRAAAGV3:VVRRRAAG
HC: VVLFSEVLOC: VGLWLDRVHCV6: VVLLSEVL
CF1: RVTGMSLV
Chromogenic Substrate Assay• Results most likely from Enterokinase•Prefix (Suc, Boc, Z, Ac) to make substrate soluble in H2O•Suffix (pNA-paranitroaniline)
Phage Display
Chicken CTSG Chinese Alligator MCP-1
Phage Display Results
1 2 3 4 50.00
5.00
10.00
15.00
20.00
25.00
30.00
CTSG & MCP-1 vs. PBS 29/3/16
CTSGMCP-1PBS
Day
Ratio
vs.
PBS
1 2 3 4 50.001.002.003.004.005.006.007.008.009.00
10.00
CTSG & MCP-1 vs. PBS 18/4/16
CTSGMCP-1PBS
Day
Ratio
vs.
PBS
1 2 3 4 5 60.002.004.006.008.00
10.0012.0014.0016.00
CTSG & MCP-1 vs. PBS 02/05/16
CTSGMCP-1PBS
Day
Ratio
vs.
PBS
•Chicken CTSG & Alligator MCP-1 PFU ratios versus PBS. •PFU was calculated as an average from usually 2-3 different dilution sets for each day.•See a selection arc but towards the end of the week it crashes, otherwise it would continue.
Conclusions• Chicken CTSG & alligator MCP-1 have a extremely specific
cleavage specificity that is possibly addressed further up or downstream from the P5-P5’ site or with multiple interaction sites with its substrates.
• Many proteases interact with proteoglycans in and outside of granules and on the cell membrane, without these specific configurations or charge alignments there could be reduced affinity to primary targets.
• Augmenting phage display library (or trying different recombinant/chromogenic substrates) for better substrate representation, or attempt to have a protease/substrate/membrane interaction etc.
• Future…
Acknowledgements
• A big thanks to…Lars Hellman
Srinivas Akula
Zhirong Fu
Gurdeep Chahal
Payal Banerjee
The A8:2 Corridor!